Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08245

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,864,277	+		DDA3937_RS08235	0.64	+1.1
1,864,291	+				-0.2
1,864,291	+		DDA3937_RS08235	0.65	-1.5
1,864,291	+		DDA3937_RS08235	0.65	+1.4
1,864,291	+		DDA3937_RS08235	0.65	-1.1
1,864,291	+		DDA3937_RS08235	0.65	-0.1
1,864,292	-				-0.6
1,864,292	-		DDA3937_RS08235	0.65	-3.2
1,864,292	-		DDA3937_RS08235	0.65	+1.6
1,864,292	-		DDA3937_RS08235	0.65	-1.9
1,864,292	-		DDA3937_RS08235	0.65	+1.7
1,864,292	-		DDA3937_RS08235	0.65	+0.6
1,864,292	-		DDA3937_RS08235	0.65	+0.5
1,864,292	-				-0.2
1,864,292	-		DDA3937_RS08235	0.65	-0.4
1,864,363	+		DDA3937_RS08235	0.73	-0.9
1,864,363	+		DDA3937_RS08235	0.73	-1.9
1,864,399	+		DDA3937_RS08235	0.77	+1.1
1,864,399	+		DDA3937_RS08235	0.77	-0.5
1,864,400	-		DDA3937_RS08235	0.77	+0.4
1,864,400	-		DDA3937_RS08235	0.77	-1.5
1,864,400	-		DDA3937_RS08235	0.77	+0.0
1,864,549	+				-2.5
1,864,550	-				-2.5
1,864,550	-				+0.8
1,864,614	-				-3.1
1,864,648	+				+1.4
1,864,648	+				-0.5
1,864,649	-				-0.6
1,864,673	-				-1.6
1,864,697	-				-0.0
1,864,749	+				-2.4
1,864,749	+				+0.4
1,864,750	-				+0.4
1,864,750	-				-2.7
1,864,829	-		DDA3937_RS08240	0.25	+3.5
1,864,829	-		DDA3937_RS08240	0.25	-2.2
1,865,025	-		DDA3937_RS08240	0.70	+0.3
1,865,028	+		DDA3937_RS08240	0.71	+1.6
1,865,029	-		DDA3937_RS08240	0.71	-1.4
1,865,029	-		DDA3937_RS08240	0.71	-2.9
1,865,047	-				+0.8
1,865,148	+				+2.6
1,865,149	-				-0.6
1,865,151	-				-0.6
1,865,179	-				-0.2
1,865,185	+				+0.9
1,865,185	+				+1.6
1,865,185	+				-2.3
1,865,185	+				-1.5
1,865,186	-				-1.1
1,865,186	-				-1.2
1,865,201	-				-1.8
1,865,209	-				-1.4
1,865,227	+				-0.6
1,865,352	-		DDA3937_RS08245	0.10	-0.1
1,865,409	-		DDA3937_RS08245	0.18	-1.0
1,865,430	+		DDA3937_RS08245	0.21	+0.0
1,865,431	-		DDA3937_RS08245	0.21	+2.3
1,865,499	+		DDA3937_RS08245	0.30	+0.7
1,865,499	+		DDA3937_RS08245	0.30	-1.9
1,865,499	+		DDA3937_RS08245	0.30	-3.9
1,865,664	+		DDA3937_RS08245	0.52	-1.6
1,865,664	+		DDA3937_RS08245	0.52	-0.1
1,865,665	-		DDA3937_RS08245	0.52	-1.9
1,865,665	-		DDA3937_RS08245	0.52	+0.3
1,865,665	-		DDA3937_RS08245	0.52	+0.5
1,865,665	-		DDA3937_RS08245	0.52	-0.8
1,865,665	-		DDA3937_RS08245	0.52	+2.2
1,865,683	+		DDA3937_RS08245	0.54	+0.7
1,865,683	+		DDA3937_RS08245	0.54	-1.1
1,865,684	-		DDA3937_RS08245	0.54	+0.7
1,865,684	-		DDA3937_RS08245	0.54	-1.6
1,865,684	-		DDA3937_RS08245	0.54	+1.0
1,865,707	+		DDA3937_RS08245	0.57	-0.6
1,865,707	+		DDA3937_RS08245	0.57	-2.8
1,865,729	+		DDA3937_RS08245	0.60	-0.1
1,865,729	+		DDA3937_RS08245	0.60	-3.4
1,865,729	+		DDA3937_RS08245	0.60	+0.7
1,865,729	+		DDA3937_RS08245	0.60	+0.7
1,865,730	-		DDA3937_RS08245	0.60	+2.3
1,865,730	-		DDA3937_RS08245	0.60	-1.4
1,865,730	-		DDA3937_RS08245	0.60	-0.6
1,865,831	+		DDA3937_RS08245	0.74	-1.6
1,865,865	+		DDA3937_RS08245	0.78	+1.9
1,865,866	-		DDA3937_RS08245	0.78	+0.2
1,865,866	-		DDA3937_RS08245	0.78	+0.9
1,865,898	+		DDA3937_RS08245	0.83	-2.7
1,865,955	+				-3.2
1,865,958	-				+1.3
1,865,958	-				-1.3
1,865,958	-				-0.9
1,865,958	-				+0.5
1,866,035	+				+0.2
1,866,035	+				-0.3
1,866,049	+				+1.1
1,866,067	+				+0.3
1,866,068	-				-2.8
1,866,068	-				-1.6
1,866,072	+				-0.9
1,866,072	+				-1.6
1,866,072	+				-1.9
1,866,072	+				-0.8
1,866,072	+				-1.0
1,866,073	-				+1.1
1,866,073	-				-1.2
1,866,075	+				+0.5
1,866,075	+				-1.4
1,866,160	+		DDA3937_RS08250	0.16	-1.3
1,866,227	+		DDA3937_RS08250	0.25	+1.1
1,866,227	+		DDA3937_RS08250	0.25	+0.5
1,866,227	+		DDA3937_RS08250	0.25	-3.0
1,866,227	+		DDA3937_RS08250	0.25	+1.4
1,866,227	+		DDA3937_RS08250	0.25	+0.4
1,866,227	+		DDA3937_RS08250	0.25	+0.1
1,866,227	+		DDA3937_RS08250	0.25	-2.6
1,866,227	+		DDA3937_RS08250	0.25	-0.6
1,866,227	+		DDA3937_RS08250	0.25	+0.3
1,866,227	+				-0.6
1,866,227	+		DDA3937_RS08250	0.25	-1.6
1,866,228	-		DDA3937_RS08250	0.26	-2.9
1,866,228	-		DDA3937_RS08250	0.26	-0.8
1,866,228	-		DDA3937_RS08250	0.26	-0.2
1,866,228	-		DDA3937_RS08250	0.26	-0.9
1,866,228	-		DDA3937_RS08250	0.26	+1.7
1,866,228	-		DDA3937_RS08250	0.26	-0.9
1,866,228	-		DDA3937_RS08250	0.26	-2.2
1,866,228	-		DDA3937_RS08250	0.26	-2.5
1,866,228	-		DDA3937_RS08250	0.26	-2.1
1,866,228	-		DDA3937_RS08250	0.26	-2.9
1,866,236	+		DDA3937_RS08250	0.27	+1.4
1,866,236	+		DDA3937_RS08250	0.27	-0.8
1,866,236	+		DDA3937_RS08250	0.27	-2.6
1,866,237	-		DDA3937_RS08250	0.27	-2.9
1,866,237	-		DDA3937_RS08250	0.27	+2.2
1,866,237	-		DDA3937_RS08250	0.27	-0.9
1,866,267	+		DDA3937_RS08250	0.31	-0.0
1,866,267	+		DDA3937_RS08250	0.31	-0.6
1,866,267	+		DDA3937_RS08250	0.31	-0.1
1,866,268	-		DDA3937_RS08250	0.31	-2.3
1,866,268	-		DDA3937_RS08250	0.31	-2.3
1,866,268	-		DDA3937_RS08250	0.31	-1.4
1,866,278	+		DDA3937_RS08250	0.33	-3.1
1,866,278	+		DDA3937_RS08250	0.33	+0.2
1,866,278	+		DDA3937_RS08250	0.33	-0.2
1,866,278	+		DDA3937_RS08250	0.33	-2.0
1,866,279	-		DDA3937_RS08250	0.33	-0.3
1,866,279	-		DDA3937_RS08250	0.33	-0.6
1,866,279	-		DDA3937_RS08250	0.33	-0.6
1,866,372	+		DDA3937_RS08250	0.46	-0.0
1,866,373	-		DDA3937_RS08250	0.46	-1.4
1,866,386	+		DDA3937_RS08250	0.48	+1.1
1,866,467	+		DDA3937_RS08250	0.60	-2.5
1,866,467	+		DDA3937_RS08250	0.60	+0.2
1,866,467	+		DDA3937_RS08250	0.60	-1.6
1,866,467	+		DDA3937_RS08250	0.60	-1.8
1,866,468	-		DDA3937_RS08250	0.60	+1.4
1,866,468	-		DDA3937_RS08250	0.60	-2.5
1,866,468	-		DDA3937_RS08250	0.60	-1.2
1,866,469	+		DDA3937_RS08250	0.60	-1.2
1,866,469	+		DDA3937_RS08250	0.60	+0.7
1,866,469	+		DDA3937_RS08250	0.60	-1.8
1,866,469	+		DDA3937_RS08250	0.60	+0.8
1,866,469	+		DDA3937_RS08250	0.60	-2.1
1,866,469	+		DDA3937_RS08250	0.60	-1.3
1,866,470	-		DDA3937_RS08250	0.60	-2.9
1,866,470	-		DDA3937_RS08250	0.60	-0.9
1,866,470	-		DDA3937_RS08250	0.60	+0.1
1,866,470	-		DDA3937_RS08250	0.60	-2.3
1,866,470	-		DDA3937_RS08250	0.60	+1.7
1,866,512	-		DDA3937_RS08250	0.66	-1.2
1,866,599	+		DDA3937_RS08250	0.79	-0.6
1,866,599	+		DDA3937_RS08250	0.79	-2.2
1,866,599	+		DDA3937_RS08250	0.79	+1.3
1,866,599	+		DDA3937_RS08250	0.79	+0.5
1,866,600	-		DDA3937_RS08250	0.79	-2.6
1,866,600	-		DDA3937_RS08250	0.79	+0.2
1,866,600	-		DDA3937_RS08250	0.79	-1.2
1,866,600	-		DDA3937_RS08250	0.79	-1.6
1,866,600	-		DDA3937_RS08250	0.79	-0.4
1,866,647	+		DDA3937_RS08250	0.86	-2.1
1,866,647	+		DDA3937_RS08250	0.86	-0.9
1,866,647	+		DDA3937_RS08250	0.86	-1.8
1,866,647	+				-0.2
1,866,648	-		DDA3937_RS08250	0.86	-1.6
1,866,648	-		DDA3937_RS08250	0.86	-1.2
1,866,648	-		DDA3937_RS08250	0.86	-2.1
1,866,648	-		DDA3937_RS08250	0.86	+2.0
1,866,648	-		DDA3937_RS08250	0.86	-1.4
1,866,648	-		DDA3937_RS08250	0.86	+0.5
1,866,668	+		DDA3937_RS08250	0.89	-0.2
1,866,734	+				-0.6
1,866,734	+				-0.0
1,866,734	+				-1.6
1,866,734	+				-1.8
1,866,734	+				-0.6
1,866,735	-				-1.8
1,866,735	-				-3.4
1,866,735	-				-1.3
1,866,735	-				-0.4
1,866,743	+				-1.3
1,866,743	+				-0.6
1,866,751	-				-0.2
1,866,751	-				-0.6
1,866,764	+				-1.4
1,866,768	+				+1.5
1,866,768	+				-1.6
1,866,768	+				-2.9
1,866,769	-				+0.3
1,866,848	+		DDA3937_RS08255	0.13	+2.1
1,866,849	-		DDA3937_RS08255	0.13	-2.1
1,866,930	-		DDA3937_RS08255	0.23	-1.1
1,866,969	+		DDA3937_RS08255	0.28	-3.1
1,867,000	+		DDA3937_RS08255	0.32	-2.8
1,867,001	-		DDA3937_RS08255	0.32	-2.1
1,867,001	-		DDA3937_RS08255	0.32	-1.9
1,867,001	-		DDA3937_RS08255	0.32	-0.9
1,867,001	-		DDA3937_RS08255	0.32	+0.7