Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08235

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,862,697	+		DDA3937_RS08230	0.46	-1.0
1,862,710	+		DDA3937_RS08230	0.47	-1.0
1,862,725	+		DDA3937_RS08230	0.48	+1.5
1,862,725	+		DDA3937_RS08230	0.48	-0.9
1,862,725	+		DDA3937_RS08230	0.48	-0.6
1,862,725	+		DDA3937_RS08230	0.48	+1.9
1,862,725	+				+1.4
1,862,725	+		DDA3937_RS08230	0.48	-0.0
1,862,726	-		DDA3937_RS08230	0.49	+0.1
1,862,726	-		DDA3937_RS08230	0.49	+0.4
1,862,726	-		DDA3937_RS08230	0.49	-4.0
1,862,726	-		DDA3937_RS08230	0.49	-0.1
1,862,726	-		DDA3937_RS08230	0.49	+1.3
1,862,726	-		DDA3937_RS08230	0.49	+1.5
1,862,726	-		DDA3937_RS08230	0.49	-0.4
1,862,726	-		DDA3937_RS08230	0.49	-3.6
1,862,726	-		DDA3937_RS08230	0.49	+1.0
1,862,726	-		DDA3937_RS08230	0.49	-0.8
1,862,726	-		DDA3937_RS08230	0.49	-0.4
1,862,729	+		DDA3937_RS08230	0.49	-0.9
1,862,729	+		DDA3937_RS08230	0.49	-2.6
1,862,729	+		DDA3937_RS08230	0.49	+2.5
1,862,781	-		DDA3937_RS08230	0.53	-0.9
1,862,788	-		DDA3937_RS08230	0.54	+0.8
1,862,823	-		DDA3937_RS08230	0.57	-3.8
1,862,830	+		DDA3937_RS08230	0.57	-0.8
1,862,830	+		DDA3937_RS08230	0.57	-2.2
1,862,830	+		DDA3937_RS08230	0.57	-0.1
1,862,830	+		DDA3937_RS08230	0.57	+0.5
1,862,831	-		DDA3937_RS08230	0.57	-3.1
1,862,831	-		DDA3937_RS08230	0.57	+0.4
1,862,831	-		DDA3937_RS08230	0.57	-3.2
1,862,934	-		DDA3937_RS08230	0.66	+1.2
1,862,949	+		DDA3937_RS08230	0.67	-0.9
1,862,949	+		DDA3937_RS08230	0.67	-0.9
1,862,949	+		DDA3937_RS08230	0.67	-1.2
1,862,950	-		DDA3937_RS08230	0.67	-0.2
1,862,963	-		DDA3937_RS08230	0.68	-2.8
1,862,963	-		DDA3937_RS08230	0.68	-0.4
1,862,963	-		DDA3937_RS08230	0.68	-1.6
1,862,966	+		DDA3937_RS08230	0.68	+0.1
1,862,966	+		DDA3937_RS08230	0.68	+2.0
1,862,966	+		DDA3937_RS08230	0.68	-2.1
1,862,967	-		DDA3937_RS08230	0.69	+1.3
1,862,967	-		DDA3937_RS08230	0.69	-2.5
1,862,967	-		DDA3937_RS08230	0.69	-0.0
1,862,967	-		DDA3937_RS08230	0.69	+0.0
1,863,312	+				-2.4
1,863,312	+				-2.7
1,863,312	+				+0.4
1,863,313	-				-1.0
1,863,320	+				-2.0
1,863,443	+				-2.2
1,863,443	+				-1.5
1,863,443	+				+0.7
1,863,444	-				-1.9
1,863,444	-				+1.0
1,863,451	+				-1.8
1,863,451	+				+1.0
1,863,452	-				-1.6
1,863,464	+				+0.5
1,863,465	-				+0.8
1,863,465	-				-1.4
1,863,465	-				-0.6
1,863,467	+				-0.6
1,863,467	+				-0.9
1,863,467	+				+0.7
1,863,468	-				-2.1
1,863,468	-				-1.6
1,863,468	-				+1.4
1,863,468	-				-2.6
1,863,468	-				-0.6
1,863,468	-				-1.2
1,863,468	-				-2.2
1,863,580	+				+1.4
1,863,580	+				-2.1
1,863,581	-				-0.6
1,863,598	+				-2.3
1,863,599	-				-1.4
1,863,605	+				-0.3
1,863,605	+				+1.2
1,863,605	+				-1.6
1,863,605	+				-0.4
1,863,605	+				+1.2
1,863,605	+				+0.5
1,863,605	+				-2.2
1,863,606	-				-0.2
1,863,606	-				+0.3
1,863,606	-				-0.9
1,863,609	+				+0.3
1,863,635	+				+0.3
1,863,635	+				-0.7
1,863,635	+				+0.2
1,863,635	+				-2.3
1,863,636	-				-3.0
1,863,645	-				+0.5
1,863,655	+				-0.6
1,863,655	+				-1.3
1,863,656	-				+0.4
1,863,656	-				-1.3
1,863,656	-				+1.6
1,863,656	-				-1.9
1,863,656	-				+0.4
1,863,696	+				+0.7
1,863,696	+				-1.6
1,863,697	-				+1.0
1,863,697	-				-0.6
1,863,871	+		DDA3937_RS08235	0.20	-1.6
1,863,872	-		DDA3937_RS08235	0.20	-0.9
1,863,881	+		DDA3937_RS08235	0.21	-0.9
1,863,881	+		DDA3937_RS08235	0.21	-0.5
1,863,881	+		DDA3937_RS08235	0.21	+2.2
1,863,882	-		DDA3937_RS08235	0.21	-1.8
1,863,882	-		DDA3937_RS08235	0.21	-0.4
1,863,882	-		DDA3937_RS08235	0.21	-0.9
1,863,882	-		DDA3937_RS08235	0.21	-0.2
1,863,882	-		DDA3937_RS08235	0.21	-3.0
1,863,882	-		DDA3937_RS08235	0.21	-0.6
1,863,883	+		DDA3937_RS08235	0.21	+0.7
1,863,884	-		DDA3937_RS08235	0.21	-0.6
1,863,884	-		DDA3937_RS08235	0.21	-0.9
1,864,058	+		DDA3937_RS08235	0.40	+2.7
1,864,058	+		DDA3937_RS08235	0.40	-0.9
1,864,059	-		DDA3937_RS08235	0.40	+0.0
1,864,087	-		DDA3937_RS08235	0.43	-1.6
1,864,099	+		DDA3937_RS08235	0.44	-0.9
1,864,099	+		DDA3937_RS08235	0.44	+0.6
1,864,131	-		DDA3937_RS08235	0.48	+2.2
1,864,162	+		DDA3937_RS08235	0.51	+0.4
1,864,162	+		DDA3937_RS08235	0.51	-0.2
1,864,170	+		DDA3937_RS08235	0.52	+0.4
1,864,170	+		DDA3937_RS08235	0.52	+0.6
1,864,230	+		DDA3937_RS08235	0.59	+1.4
1,864,230	+		DDA3937_RS08235	0.59	+0.7
1,864,231	-		DDA3937_RS08235	0.59	-1.2
1,864,231	-		DDA3937_RS08235	0.59	-0.6
1,864,254	-		DDA3937_RS08235	0.61	+0.1
1,864,277	+		DDA3937_RS08235	0.64	+1.1
1,864,291	+				-0.2
1,864,291	+		DDA3937_RS08235	0.65	-1.5
1,864,291	+		DDA3937_RS08235	0.65	+1.4
1,864,291	+		DDA3937_RS08235	0.65	-1.1
1,864,291	+		DDA3937_RS08235	0.65	-0.1
1,864,292	-				-0.6
1,864,292	-		DDA3937_RS08235	0.65	-3.2
1,864,292	-		DDA3937_RS08235	0.65	+1.6
1,864,292	-		DDA3937_RS08235	0.65	-1.9
1,864,292	-		DDA3937_RS08235	0.65	+1.7
1,864,292	-		DDA3937_RS08235	0.65	+0.6
1,864,292	-		DDA3937_RS08235	0.65	+0.5
1,864,292	-				-0.2
1,864,292	-		DDA3937_RS08235	0.65	-0.4
1,864,363	+		DDA3937_RS08235	0.73	-0.9
1,864,363	+		DDA3937_RS08235	0.73	-1.9
1,864,399	+		DDA3937_RS08235	0.77	+1.1
1,864,399	+		DDA3937_RS08235	0.77	-0.5
1,864,400	-		DDA3937_RS08235	0.77	+0.4
1,864,400	-		DDA3937_RS08235	0.77	-1.5
1,864,400	-		DDA3937_RS08235	0.77	+0.0
1,864,549	+				-2.5
1,864,550	-				-2.5
1,864,550	-				+0.8
1,864,614	-				-3.1
1,864,648	+				+1.4
1,864,648	+				-0.5
1,864,649	-				-0.6
1,864,673	-				-1.6
1,864,697	-				-0.0
1,864,749	+				-2.4
1,864,749	+				+0.4
1,864,750	-				+0.4
1,864,750	-				-2.7
1,864,829	-		DDA3937_RS08240	0.25	+3.5
1,864,829	-		DDA3937_RS08240	0.25	-2.2
1,865,025	-		DDA3937_RS08240	0.70	+0.3
1,865,028	+		DDA3937_RS08240	0.71	+1.6
1,865,029	-		DDA3937_RS08240	0.71	-1.4
1,865,029	-		DDA3937_RS08240	0.71	-2.9
1,865,047	-				+0.8
1,865,148	+				+2.6
1,865,149	-				-0.6
1,865,151	-				-0.6
1,865,179	-				-0.2
1,865,185	+				+0.9
1,865,185	+				+1.6
1,865,185	+				-2.3
1,865,185	+				-1.5
1,865,186	-				-1.1
1,865,186	-				-1.2
1,865,201	-				-1.8
1,865,209	-				-1.4
1,865,227	+				-0.6
1,865,352	-		DDA3937_RS08245	0.10	-0.1
1,865,409	-		DDA3937_RS08245	0.18	-1.0
1,865,430	+		DDA3937_RS08245	0.21	+0.0
1,865,431	-		DDA3937_RS08245	0.21	+2.3
1,865,499	+		DDA3937_RS08245	0.30	+0.7
1,865,499	+		DDA3937_RS08245	0.30	-1.9
1,865,499	+		DDA3937_RS08245	0.30	-3.9