Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08195

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,854,918	+		DDA3937_RS08190	0.47	-1.2
1,854,918	+		DDA3937_RS08190	0.47	+2.8
1,854,918	+		DDA3937_RS08190	0.47	-1.8
1,854,918	+		DDA3937_RS08190	0.47	+0.4
1,854,919	-		DDA3937_RS08190	0.47	-0.9
1,854,919	-		DDA3937_RS08190	0.47	-2.1
1,854,919	-		DDA3937_RS08190	0.47	-1.9
1,854,919	-		DDA3937_RS08190	0.47	-1.9
1,854,919	-		DDA3937_RS08190	0.47	-3.1
1,854,957	+		DDA3937_RS08190	0.50	-1.2
1,854,957	+		DDA3937_RS08190	0.50	-1.8
1,854,958	-		DDA3937_RS08190	0.50	-1.8
1,854,958	-		DDA3937_RS08190	0.50	-3.3
1,854,966	+		DDA3937_RS08190	0.51	+1.8
1,854,966	+		DDA3937_RS08190	0.51	+1.2
1,854,966	+		DDA3937_RS08190	0.51	+1.8
1,855,307	-		DDA3937_RS08190	0.81	-3.4
1,855,417	-				-3.4
1,855,435	+				-1.4
1,855,633	+				-0.1
1,855,634	-				-2.5
1,855,720	+				-0.9
1,855,720	+				-1.2
1,855,720	+				+0.0
1,855,721	-				+0.1
1,855,721	-				-2.1
1,855,731	+				-0.6
1,855,732	-				+0.4
1,855,732	-				+1.2
1,855,732	-				+0.4
1,855,788	+				+0.7
1,855,789	-				-2.7
1,855,844	+				-1.1
1,855,844	+				-0.7
1,855,844	+				-1.8
1,855,980	+				-0.2
1,855,981	-		DDA3937_RS08195	0.16	-1.1
1,856,056	+		DDA3937_RS08195	0.24	-0.6
1,856,056	+		DDA3937_RS08195	0.24	-0.9
1,856,057	-		DDA3937_RS08195	0.24	-0.8
1,856,057	-		DDA3937_RS08195	0.24	-0.6
1,856,062	+		DDA3937_RS08195	0.25	-0.4
1,856,062	+		DDA3937_RS08195	0.25	-1.8
1,856,062	+		DDA3937_RS08195	0.25	-0.1
1,856,062	+		DDA3937_RS08195	0.25	+0.7
1,856,062	+		DDA3937_RS08195	0.25	-0.9
1,856,062	+				+0.4
1,856,062	+		DDA3937_RS08195	0.25	+0.6
1,856,062	+		DDA3937_RS08195	0.25	-0.9
1,856,062	+		DDA3937_RS08195	0.25	+0.3
1,856,063	-		DDA3937_RS08195	0.25	-0.6
1,856,063	-		DDA3937_RS08195	0.25	-1.9
1,856,063	-		DDA3937_RS08195	0.25	-0.9
1,856,064	+		DDA3937_RS08195	0.25	+2.2
1,856,064	+		DDA3937_RS08195	0.25	+1.2
1,856,064	+		DDA3937_RS08195	0.25	-2.8
1,856,065	-		DDA3937_RS08195	0.25	-0.6
1,856,253	+		DDA3937_RS08195	0.45	-3.5
1,856,464	+		DDA3937_RS08195	0.66	-1.8
1,856,464	+		DDA3937_RS08195	0.66	-1.1
1,856,465	-		DDA3937_RS08195	0.67	-2.2
1,856,501	-		DDA3937_RS08195	0.70	+0.8
1,856,501	-		DDA3937_RS08195	0.70	-1.7
1,856,533	+		DDA3937_RS08195	0.74	-1.8
1,856,533	+		DDA3937_RS08195	0.74	-1.2
1,856,533	+				+0.4
1,856,534	-		DDA3937_RS08195	0.74	+1.1
1,856,534	-		DDA3937_RS08195	0.74	-2.4
1,856,534	-		DDA3937_RS08195	0.74	+0.9
1,856,547	+		DDA3937_RS08195	0.75	+3.3
1,856,548	-		DDA3937_RS08195	0.75	-0.0
1,856,548	-		DDA3937_RS08195	0.75	-1.2
1,856,548	-		DDA3937_RS08195	0.75	+1.7
1,856,548	-		DDA3937_RS08195	0.75	-1.9
1,856,548	-		DDA3937_RS08195	0.75	+0.1
1,856,569	+		DDA3937_RS08195	0.77	+0.8
1,856,686	+		DDA3937_RS08195	0.89	-0.8
1,856,686	+		DDA3937_RS08195	0.89	+0.9
1,856,723	+				-0.2
1,856,723	+				+2.7
1,856,723	+				-2.0
1,856,723	+				-1.2
1,856,723	+				+1.9
1,856,724	-				-0.6
1,856,724	-				-2.2
1,856,724	-				-1.8
1,856,725	+				-0.9
1,856,785	+				-0.4
1,856,785	+				-1.2
1,856,786	-				-1.6
1,856,834	+				-0.9
1,856,835	-				+0.4
1,856,910	+				-1.2
1,856,910	+				-1.4
1,856,911	-				-0.3
1,856,911	-				+1.0
1,856,996	+		DDA3937_RS08200	0.28	-0.6
1,856,996	+		DDA3937_RS08200	0.28	+1.4
1,856,997	-		DDA3937_RS08200	0.28	-2.3
1,857,055	-		DDA3937_RS08200	0.42	-1.3
1,857,092	+		DDA3937_RS08200	0.51	+0.0
1,857,093	-		DDA3937_RS08200	0.51	-0.6
1,857,093	-		DDA3937_RS08200	0.51	+1.6
1,857,097	+		DDA3937_RS08200	0.52	+0.9
1,857,097	+		DDA3937_RS08200	0.52	-0.1
1,857,097	+		DDA3937_RS08200	0.52	+0.6
1,857,098	-		DDA3937_RS08200	0.52	-0.6
1,857,098	-		DDA3937_RS08200	0.52	+0.6
1,857,106	-		DDA3937_RS08200	0.54	+0.3
1,857,181	+		DDA3937_RS08200	0.72	-2.3
1,857,232	+		DDA3937_RS08200	0.84	+0.3
1,857,232	+		DDA3937_RS08200	0.84	-2.0
1,857,239	+		DDA3937_RS08200	0.85	+1.4
1,857,239	+		DDA3937_RS08200	0.85	-1.1
1,857,240	-		DDA3937_RS08200	0.85	-2.4
1,857,261	+				-2.6
1,857,274	+				-2.8
1,857,275	-				+0.1
1,857,277	+				+0.4
1,857,278	-				-1.9
1,857,278	-				-2.4
1,857,299	+				-0.9
1,857,299	+				-1.2
1,857,299	+				+1.6
1,857,299	+				-2.7
1,857,299	+				-1.6
1,857,318	+				+0.4
1,857,319	-				-2.5
1,857,330	+				-3.3
1,857,330	+				-0.9
1,857,331	-				+0.6
1,857,331	-				+1.3
1,857,356	+				-2.7
1,857,356	+				-0.5
1,857,356	+				-1.4
1,857,356	+				-3.0
1,857,357	-				-3.5
1,857,357	-				-0.2
1,857,357	-				-0.6
1,857,357	-				-2.3
1,857,358	+				-2.2
1,857,358	+				+0.4
1,857,359	-				-0.1
1,857,482	+		DDA3937_RS08205	0.14	-0.9
1,857,482	+		DDA3937_RS08205	0.14	+0.4
1,857,482	+		DDA3937_RS08205	0.14	-0.0
1,857,482	+		DDA3937_RS08205	0.14	-1.8
1,857,483	-		DDA3937_RS08205	0.14	-2.5
1,857,483	-		DDA3937_RS08205	0.14	-0.8
1,857,483	-		DDA3937_RS08205	0.14	-2.6
1,857,483	-				-0.6
1,857,487	+		DDA3937_RS08205	0.14	-0.6
1,857,487	+		DDA3937_RS08205	0.14	-1.8
1,857,487	+		DDA3937_RS08205	0.14	+2.3
1,857,487	+		DDA3937_RS08205	0.14	-0.5
1,857,487	+		DDA3937_RS08205	0.14	+2.1
1,857,488	-		DDA3937_RS08205	0.14	-4.5
1,857,488	-		DDA3937_RS08205	0.14	-1.6
1,857,505	+		DDA3937_RS08205	0.16	-1.2
1,857,506	-		DDA3937_RS08205	0.16	-0.8
1,857,506	-		DDA3937_RS08205	0.16	+3.4
1,857,515	+		DDA3937_RS08205	0.17	-1.8
1,857,516	-		DDA3937_RS08205	0.18	-2.7
1,857,516	-		DDA3937_RS08205	0.18	-0.4
1,857,516	-		DDA3937_RS08205	0.18	-1.8
1,857,548	+		DDA3937_RS08205	0.21	-1.6
1,857,549	-		DDA3937_RS08205	0.21	-2.1
1,857,593	-		DDA3937_RS08205	0.26	-0.9
1,857,593	-		DDA3937_RS08205	0.26	+1.0
1,857,742	+		DDA3937_RS08205	0.42	-1.8