Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07680

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,729,941	+				-1.8
1,729,998	+				-0.2
1,729,998	+				+1.5
1,729,998	+				-1.2
1,729,998	+				+0.4
1,729,998	+				-1.2
1,729,998	+				+0.5
1,729,998	+				-1.6
1,729,998	+				-2.7
1,729,998	+				-0.2
1,729,999	-				+0.8
1,730,004	+				-2.3
1,730,004	+				+0.1
1,730,004	+				+1.2
1,730,004	+				+0.1
1,730,005	-				-2.7
1,730,005	-				+0.8
1,730,005	-				+0.0
1,730,005	-				+1.4
1,730,005	-				-0.4
1,730,005	-				+0.4
1,730,006	+				-0.8
1,730,007	-				-1.4
1,730,007	-				+1.9
1,730,007	-				-1.6
1,730,007	-				-2.2
1,730,044	+				-0.4
1,730,044	+				+2.3
1,730,045	-				-2.7
1,730,045	-				+1.6
1,730,047	+				+0.6
1,730,047	+				+1.6
1,730,047	+				-0.8
1,730,047	+				+0.9
1,730,048	-				-2.7
1,730,048	-				-0.2
1,730,048	-				-0.7
1,730,053	+				-0.8
1,730,054	-				-1.7
1,730,054	-				-0.1
1,730,061	+				-2.7
1,730,061	+				+0.4
1,730,061	+				-1.3
1,730,061	+				-1.5
1,730,061	+				-1.4
1,730,061	+				-0.6
1,730,062	-				+2.4
1,730,075	+				-1.4
1,730,075	+				-2.0
1,730,075	+				-1.8
1,730,075	+				-3.5
1,730,075	+				+0.4
1,730,076	-				+0.4
1,730,076	-				+1.1
1,730,076	-				+0.4
1,730,076	-				-0.2
1,730,076	-				+1.7
1,730,076	-				+1.2
1,730,076	-				-0.2
1,730,076	-				-3.4
1,730,076	-				-1.3
1,730,112	+				+0.6
1,730,112	+				-0.6
1,730,113	-				-0.6
1,730,113	-				+0.8
1,730,116	+				-0.3
1,730,116	+				+2.1
1,730,116	+				-1.0
1,730,116	+				+2.0
1,730,116	+				-0.6
1,730,116	+				+1.4
1,730,116	+				-4.4
1,730,116	+				-2.2
1,730,116	+				-1.6
1,730,116	+				-0.9
1,730,116	+				+1.4
1,730,117	-				+1.7
1,730,117	-				-1.2
1,730,117	-				+0.0
1,730,117	-				-0.9
1,730,117	-				+0.4
1,730,117	-				+1.1
1,730,117	-				+1.2
1,730,117	-				+0.8
1,730,123	-				-1.2
1,730,123	-				-1.1
1,730,123	-				-1.6
1,730,128	+				-2.3
1,730,128	+				-3.1
1,730,129	-				-0.0
1,730,180	+				-1.0
1,730,180	+				+0.3
1,730,180	+				+2.8
1,730,181	-				+1.6
1,730,181	-				-0.9
1,730,181	-				+4.2
1,730,181	-				+1.6
1,730,181	-				-1.8
1,730,248	+				-1.0
1,730,337	+				+2.8
1,730,337	+				-2.2
1,730,337	+				-2.1
1,730,337	+				-2.7
1,730,337	+				+1.4
1,730,337	+				+1.0
1,730,337	+				-2.2
1,730,338	-				+1.4
1,730,338	-				-0.2
1,730,338	-				-1.8
1,730,338	-				-0.0
1,730,462	+				-0.2
1,730,462	+				-2.1
1,730,462	+				+0.8
1,730,462	+				+0.9
1,730,463	-				+0.2
1,730,463	-				-1.4
1,730,467	+				-2.8
1,730,480	-				-1.6
1,730,535	-				-1.9
1,730,535	-				-1.4
1,730,621	+				-0.2
1,730,708	+		DDA3937_RS07675	0.30	-1.4
1,730,738	+		DDA3937_RS07675	0.40	-2.5
1,730,739	-				+0.4
1,730,745	+		DDA3937_RS07675	0.43	-0.1
1,730,745	+		DDA3937_RS07675	0.43	-1.1
1,730,745	+		DDA3937_RS07675	0.43	-1.7
1,730,746	-		DDA3937_RS07675	0.43	-1.6
1,730,807	+		DDA3937_RS07675	0.64	-1.6
1,730,807	+		DDA3937_RS07675	0.64	-0.2
1,730,808	-		DDA3937_RS07675	0.64	+1.7
1,730,808	-		DDA3937_RS07675	0.64	-2.2
1,730,825	+		DDA3937_RS07675	0.70	-2.4
1,730,826	-		DDA3937_RS07675	0.70	+0.6
1,730,826	-		DDA3937_RS07675	0.70	+0.1
1,730,894	+				+0.1
1,730,894	+				-0.8
1,730,894	+				-2.2
1,730,894	+				-1.9
1,730,895	-				+0.1
1,730,895	-				-2.7
1,730,895	-				-3.5
1,730,895	-				-0.6
1,730,895	-				-1.4
1,730,895	-				+2.2
1,730,905	+				-1.8
1,730,905	+				+0.6
1,730,905	+				+1.4
1,730,906	-				-0.4
1,730,906	-				-1.2
1,730,906	-				+0.8
1,730,913	+				-0.3
1,730,913	+				+0.6
1,730,914	-				-3.0
1,730,914	-				-0.2
1,730,934	+				-0.8
1,730,934	+				+0.4
1,730,934	+				-1.9
1,730,935	-				+0.6
1,730,935	-				-3.3
1,730,939	+				+0.6
1,730,939	+				-0.8
1,730,939	+				-2.2
1,730,939	+				-1.6
1,730,940	-				-3.2
1,730,940	-				+0.9
1,730,942	+				-0.9
1,730,950	+				-0.3
1,730,950	+				-1.0
1,730,950	+				-2.6
1,730,950	+				+1.3
1,730,950	+				-0.8
1,730,950	+				-1.1
1,730,951	-				+0.1
1,730,951	-				+0.5
1,730,951	-				+0.2
1,730,951	-				+0.4
1,730,951	-				-1.4
1,730,951	-				+2.4
1,730,951	-				-2.6
1,730,954	+				-2.7
1,730,954	+				-0.6
1,730,954	+				-0.9
1,730,954	+				-2.1
1,730,963	+				-3.6
1,731,062	-		DDA3937_RS07680	0.12	-2.6
1,731,094	+		DDA3937_RS07680	0.15	-1.9
1,731,095	-		DDA3937_RS07680	0.15	-1.2
1,731,095	-		DDA3937_RS07680	0.15	-0.2
1,731,095	-		DDA3937_RS07680	0.15	-0.6
1,731,095	-		DDA3937_RS07680	0.15	-0.2
1,731,121	+		DDA3937_RS07680	0.18	+1.4
1,731,137	-		DDA3937_RS07680	0.19	-0.5
1,731,166	+		DDA3937_RS07680	0.22	-1.9
1,731,166	+		DDA3937_RS07680	0.22	-0.6
1,731,167	-				-1.2
1,731,167	-		DDA3937_RS07680	0.22	-2.1
1,731,206	-		DDA3937_RS07680	0.26	-0.8
1,731,275	-		DDA3937_RS07680	0.33	-1.5
1,731,310	+		DDA3937_RS07680	0.36	+0.7
1,731,310	+		DDA3937_RS07680	0.36	-2.3
1,731,311	-		DDA3937_RS07680	0.36	-1.4
1,731,311	-		DDA3937_RS07680	0.36	-3.4
1,731,311	-		DDA3937_RS07680	0.36	+1.0
1,731,311	-		DDA3937_RS07680	0.36	+1.8
1,731,344	+		DDA3937_RS07680	0.39	-2.7
1,731,345	-		DDA3937_RS07680	0.39	+1.2
1,731,345	-		DDA3937_RS07680	0.39	-1.6
1,731,345	-		DDA3937_RS07680	0.39	-2.7
1,731,403	-		DDA3937_RS07680	0.45	+1.2
1,731,572	+		DDA3937_RS07680	0.62	-0.2
1,731,572	+		DDA3937_RS07680	0.62	+1.2
1,731,572	+		DDA3937_RS07680	0.62	+0.2
1,731,572	+		DDA3937_RS07680	0.62	-0.1
1,731,572	+		DDA3937_RS07680	0.62	+1.6
1,731,572	+		DDA3937_RS07680	0.62	-2.1
1,731,572	+		DDA3937_RS07680	0.62	+0.4
1,731,572	+		DDA3937_RS07680	0.62	+0.6
1,731,572	+		DDA3937_RS07680	0.62	-0.1
1,731,572	+		DDA3937_RS07680	0.62	-0.9
1,731,572	+		DDA3937_RS07680	0.62	-1.9
1,731,572	+		DDA3937_RS07680	0.62	+1.6
1,731,572	+		DDA3937_RS07680	0.62	-1.8
1,731,573	-		DDA3937_RS07680	0.62	+0.4
1,731,573	-		DDA3937_RS07680	0.62	+0.6
1,731,573	-		DDA3937_RS07680	0.62	+0.9
1,731,573	-		DDA3937_RS07680	0.62	-0.0
1,731,573	-		DDA3937_RS07680	0.62	-2.4
1,731,573	-		DDA3937_RS07680	0.62	-0.8
1,731,573	-		DDA3937_RS07680	0.62	+0.6
1,731,573	-		DDA3937_RS07680	0.62	+1.7
1,731,573	-		DDA3937_RS07680	0.62	-1.6
1,731,573	-		DDA3937_RS07680	0.62	-0.6
1,731,590	-		DDA3937_RS07680	0.63	+0.4
1,731,595	+		DDA3937_RS07680	0.64	-1.4
1,731,596	-		DDA3937_RS07680	0.64	-1.2
1,731,596	-		DDA3937_RS07680	0.64	+2.4
1,731,787	+		DDA3937_RS07680	0.82	-4.1
1,731,787	+		DDA3937_RS07680	0.82	+0.2
1,731,825	+		DDA3937_RS07680	0.86	-0.3
1,731,825	+		DDA3937_RS07680	0.86	-2.5
1,731,825	+		DDA3937_RS07680	0.86	-1.2
1,731,826	-		DDA3937_RS07680	0.86	+2.0
1,731,877	+				-1.1
1,731,912	+				-2.2
1,731,913	-				-0.6
1,731,913	-				-0.0
1,731,939	+				-1.4
1,731,939	+				-0.9
1,731,939	+				-0.9
1,731,939	+				+1.3
1,731,941	+				+0.7
1,731,941	+				+1.3
1,731,941	+				-1.4
1,731,941	+				+0.2
1,731,941	+				-2.9
1,731,941	+				-0.2
1,731,941	+				-0.6
1,731,941	+				+0.2
1,731,941	+				-2.4
1,731,941	+				-2.0
1,731,941	+				-1.1
1,731,942	-				-2.5
1,731,942	-				+1.1
1,731,942	-				+0.7
1,731,942	-				-0.5
1,731,942	-				-0.5
1,731,942	-				-0.9
1,731,942	-				+0.2
1,731,942	-				+3.0
1,731,942	-				+0.8
1,731,942	-				-1.1
1,731,942	-				+1.1
1,731,948	+				+0.1
1,731,948	+				-1.1
1,731,948	+				-0.2
1,731,984	+				-0.9
1,731,985	-				-1.4
1,731,985	-				-0.9
1,731,985	-				-1.6
1,731,999	+				+0.7
1,732,049	-		DDA3937_RS07685	0.16	-2.4
1,732,198	-		DDA3937_RS07685	0.39	+1.1
1,732,309	-		DDA3937_RS07685	0.56	-1.4
1,732,460	+		DDA3937_RS07685	0.80	+0.9
1,732,460	+		DDA3937_RS07685	0.80	+1.4
1,732,460	+		DDA3937_RS07685	0.80	+0.4
1,732,499	+		DDA3937_RS07685	0.86	+0.2
1,732,545	+				-0.9
1,732,545	+				-1.4
1,732,545	+				+1.7
1,732,546	-				-1.6
1,732,666	-				-2.5
1,732,765	-		DDA3937_RS07690	0.20	-0.3
1,732,894	+		DDA3937_RS07690	0.34	+1.2
1,732,895	-		DDA3937_RS07690	0.34	-0.9
1,732,895	-		DDA3937_RS07690	0.34	-2.5
1,732,945	+		DDA3937_RS07690	0.40	-1.4