Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07560

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,706,530	+		DDA3937_RS07555	0.52	-2.2
1,706,556	+		DDA3937_RS07555	0.54	-1.6
1,706,662	+		DDA3937_RS07555	0.61	-2.5
1,706,662	+		DDA3937_RS07555	0.61	+0.5
1,706,680	+		DDA3937_RS07555	0.63	+1.1
1,706,734	+		DDA3937_RS07555	0.66	-0.9
1,706,734	+		DDA3937_RS07555	0.66	-0.9
1,706,735	-		DDA3937_RS07555	0.66	+0.0
1,706,782	+				-0.6
1,706,782	+		DDA3937_RS07555	0.69	-1.9
1,706,782	+		DDA3937_RS07555	0.69	-0.9
1,706,783	-		DDA3937_RS07555	0.70	+1.8
1,706,783	-		DDA3937_RS07555	0.70	-0.4
1,706,784	+		DDA3937_RS07555	0.70	-0.0
1,706,784	+		DDA3937_RS07555	0.70	-2.2
1,706,784	+		DDA3937_RS07555	0.70	+1.3
1,706,784	+		DDA3937_RS07555	0.70	-0.8
1,706,784	+		DDA3937_RS07555	0.70	+2.2
1,706,784	+		DDA3937_RS07555	0.70	-0.6
1,706,784	+				+1.4
1,706,784	+		DDA3937_RS07555	0.70	+0.4
1,706,784	+		DDA3937_RS07555	0.70	+0.3
1,706,785	-				-0.9
1,706,785	-		DDA3937_RS07555	0.70	+0.7
1,706,785	-		DDA3937_RS07555	0.70	+0.9
1,706,785	-		DDA3937_RS07555	0.70	-0.2
1,706,785	-		DDA3937_RS07555	0.70	-2.3
1,706,785	-		DDA3937_RS07555	0.70	-1.9
1,706,785	-		DDA3937_RS07555	0.70	-0.3
1,706,881	+		DDA3937_RS07555	0.76	-3.0
1,706,881	+				-0.2
1,706,882	-		DDA3937_RS07555	0.76	+0.4
1,706,882	-		DDA3937_RS07555	0.76	+0.7
1,706,882	-		DDA3937_RS07555	0.76	+0.4
1,706,882	-		DDA3937_RS07555	0.76	-0.8
1,706,882	-		DDA3937_RS07555	0.76	-0.6
1,706,882	-		DDA3937_RS07555	0.76	-2.9
1,706,883	+		DDA3937_RS07555	0.76	-1.4
1,706,883	+		DDA3937_RS07555	0.76	-3.0
1,706,883	+		DDA3937_RS07555	0.76	-1.3
1,706,883	+		DDA3937_RS07555	0.76	+0.6
1,706,884	-		DDA3937_RS07555	0.76	-0.1
1,706,884	-		DDA3937_RS07555	0.76	-0.9
1,706,884	-		DDA3937_RS07555	0.76	-1.4
1,706,884	-		DDA3937_RS07555	0.76	-1.6
1,706,884	-		DDA3937_RS07555	0.76	+0.2
1,706,884	-		DDA3937_RS07555	0.76	-1.9
1,706,896	+		DDA3937_RS07555	0.77	-0.0
1,706,897	-		DDA3937_RS07555	0.77	+0.7
1,706,910	+		DDA3937_RS07555	0.78	-0.6
1,706,910	+		DDA3937_RS07555	0.78	-0.1
1,706,932	+		DDA3937_RS07555	0.80	-2.7
1,706,988	-		DDA3937_RS07555	0.83	-1.8
1,707,112	+				+0.1
1,707,112	+				-1.0
1,707,113	-				-3.3
1,707,206	+				-1.2
1,707,220	-				+1.6
1,707,293	-				+1.8
1,707,293	-				-1.9
1,707,293	-				+1.7
1,707,293	-				-1.8
1,707,293	-				+1.3
1,707,293	-				-2.2
1,707,295	+				+1.7
1,707,295	+				+1.1
1,707,295	+				-0.0
1,707,295	+				+1.0
1,707,295	+				-2.9
1,707,296	-				-0.2
1,707,296	-				+0.4
1,707,296	-				-0.5
1,707,296	-				+1.9
1,707,297	+				-0.2
1,707,297	+				-1.1
1,707,297	+				-2.1
1,707,297	+				-0.9
1,707,297	+				+3.3
1,707,297	+				+0.6
1,707,297	+				+0.0
1,707,297	+				-0.8
1,707,297	+				+0.9
1,707,297	+				-0.3
1,707,297	+				+2.3
1,707,298	-				-1.6
1,707,298	-				-2.3
1,707,298	-				-1.8
1,707,298	-				-1.3
1,707,298	-				+0.7
1,707,298	-				-3.2
1,707,298	-				-0.9
1,707,298	-				-0.5
1,707,298	-				-0.6
1,707,298	-				-0.9
1,707,298	-				+1.2
1,707,298	-				+1.4
1,707,298	-				+1.4
1,707,298	-				-0.9
1,707,298	-				-0.3
1,707,298	-				-1.6
1,707,358	+				+1.2
1,707,423	-				-1.4
1,707,438	+				-2.1
1,707,439	-				-1.4
1,707,449	+				+1.7
1,707,449	+				-3.4
1,707,449	+				-1.4
1,707,450	-				+0.9
1,707,450	-				-3.3
1,707,450	-				-0.6
1,707,450	-				-2.4
1,707,450	-				+1.8
1,707,450	-				-1.4
1,707,450	-				-1.2
1,707,452	-				-0.0
1,707,458	-				-1.5
1,707,458	-				-1.3
1,707,463	+				-0.0
1,707,463	+				-1.3
1,707,463	+				-2.7
1,707,463	+				+0.4
1,707,463	+				+0.3
1,707,463	+				+1.5
1,707,463	+				-0.9
1,707,464	-				-2.5
1,707,464	-				-0.9
1,707,464	-				+0.7
1,707,464	-				+0.8
1,707,464	-				+1.6
1,707,464	-				-0.8
1,707,464	-				-0.3
1,707,464	-				-0.7
1,707,464	-				-3.7
1,707,464	-				+0.4
1,707,469	+				-0.2
1,707,469	+				-2.0
1,707,469	+				-1.2
1,707,469	+				-1.3
1,707,469	+				-2.2
1,707,469	+				+0.4
1,707,471	+				-0.3
1,707,471	+				-2.8
1,707,471	+				+0.4
1,707,471	+				+0.3
1,707,471	+				-3.0
1,707,471	+				-0.6
1,707,471	+				-2.1
1,707,471	+				+2.3
1,707,471	+				+0.3
1,707,471	+				+0.1
1,707,471	+				-1.8
1,707,471	+				+0.3
1,707,471	+				-1.7
1,707,471	+				+1.4
1,707,471	+				+0.7
1,707,472	-				+0.4
1,707,472	-				-0.5
1,707,472	-				-1.9
1,707,472	-				-2.2
1,707,472	-				-1.2
1,707,472	-				-1.2
1,707,472	-				+0.9
1,707,472	-				-3.7
1,707,472	-				-1.9
1,707,472	-				-0.9
1,707,472	-				-2.8
1,707,472	-				+2.5
1,707,472	-				-2.5
1,707,472	-				-1.4
1,707,472	-				+2.7
1,707,472	-				-2.0
1,707,472	-				-1.8
1,707,472	-				-0.9
1,707,472	-				+0.4
1,707,472	-				-1.9
1,707,472	-				-0.9
1,707,472	-				-1.2
1,707,472	-				-1.2
1,707,472	-				-2.7
1,707,472	-				+0.1
1,707,497	-				-1.4
1,707,508	+				+1.5
1,707,508	+				-1.6
1,707,508	+				+0.3
1,707,508	+				+0.5
1,707,508	+				-1.2
1,707,508	+				-3.4
1,707,508	+				-0.2
1,707,508	+				-1.4
1,707,508	+				+1.4
1,707,508	+				-2.5
1,707,508	+				-1.4
1,707,509	-				-0.8
1,707,509	-				+0.2
1,707,509	-				+0.4
1,707,509	-				-0.6
1,707,509	-				-1.2
1,707,509	-				-2.0
1,707,509	-				+0.8
1,707,510	+				+1.1
1,707,510	+				-0.6
1,707,510	+				-0.5
1,707,510	+				-1.6
1,707,510	+				+0.3
1,707,510	+				+1.0
1,707,511	-				-2.7
1,707,511	-				-2.9
1,707,511	-				-1.0
1,707,511	-				-0.9
1,707,511	-				-1.7
1,707,563	+				-1.9
1,707,563	+				-0.9
1,707,570	+				-0.4
1,707,571	-				-1.3
1,707,572	+				+0.0
1,707,572	+				-1.1
1,707,572	+				+0.3
1,707,572	+				-0.3
1,707,572	+				+0.2
1,707,572	+				+1.4
1,707,573	-				-0.5
1,707,573	-				-1.9
1,707,573	-				-1.2
1,707,785	+		DDA3937_RS07560	0.20	-1.2
1,707,885	-		DDA3937_RS07560	0.27	-2.1
1,707,898	+		DDA3937_RS07560	0.28	-1.7
1,707,898	+				-0.6
1,707,898	+		DDA3937_RS07560	0.28	+0.6
1,707,899	-		DDA3937_RS07560	0.28	+0.7
1,707,899	-		DDA3937_RS07560	0.28	-2.5
1,708,102	+		DDA3937_RS07560	0.42	-2.4
1,708,201	+		DDA3937_RS07560	0.49	-1.3
1,708,202	-		DDA3937_RS07560	0.49	+0.6
1,708,310	-		DDA3937_RS07560	0.57	-1.6
1,708,328	+		DDA3937_RS07560	0.58	-0.4
1,708,328	+		DDA3937_RS07560	0.58	-1.9
1,708,329	-		DDA3937_RS07560	0.58	+0.9
1,708,329	-		DDA3937_RS07560	0.58	-1.6
1,708,367	+		DDA3937_RS07560	0.61	+1.4
1,708,367	+		DDA3937_RS07560	0.61	-1.8
1,708,367	+		DDA3937_RS07560	0.61	+1.1
1,708,367	+		DDA3937_RS07560	0.61	-1.5
1,708,367	+		DDA3937_RS07560	0.61	+0.2
1,708,368	-		DDA3937_RS07560	0.61	-1.0
1,708,368	-		DDA3937_RS07560	0.61	+1.4
1,708,368	-		DDA3937_RS07560	0.61	-1.1
1,708,368	-		DDA3937_RS07560	0.61	-1.2
1,708,368	-		DDA3937_RS07560	0.61	-0.1
1,708,386	-		DDA3937_RS07560	0.62	-0.9
1,708,386	-		DDA3937_RS07560	0.62	-0.9
1,708,478	-				-0.2
1,708,584	-		DDA3937_RS07560	0.76	+0.0
1,708,584	-		DDA3937_RS07560	0.76	-2.2
1,708,719	-		DDA3937_RS07560	0.85	-1.0
1,708,816	+				+1.8
1,708,816	+				+0.4
1,708,817	-				-2.8
1,708,817	-				+1.5
1,708,817	-				-0.6
1,708,898	+				+0.4
1,708,898	+				-0.3
1,708,898	+				-1.9
1,708,898	+				-1.4
1,708,899	-				+1.8
1,708,998	+				-0.1
1,708,998	+				+0.0
1,709,071	+				+2.8
1,709,071	+				+1.1
1,709,071	+				-1.4
1,709,071	+				-0.3
1,709,074	-				+0.4
1,709,074	-				+0.1
1,709,076	+				+1.7
1,709,077	-				-3.5
1,709,077	-				-2.6
1,709,077	-				+0.5
1,709,085	+				-1.4
1,709,085	+				-0.2
1,709,158	+				-0.6
1,709,158	+				-0.4
1,709,158	+				-2.1
1,709,158	+				-1.2
1,709,159	-				-0.5
1,709,159	-				-2.4
1,709,161	-				-0.5
1,709,167	+				-0.8
1,709,167	+				-0.3
1,709,167	+				-2.7
1,709,168	-				-2.9
1,709,171	+				-3.1
1,709,190	-				+0.4
1,709,190	-				-1.4
1,709,245	-				-1.9
1,709,345	+				+0.4
1,709,345	+				-0.9
1,709,345	+				-1.5
1,709,345	+				-2.9
1,709,346	-				+1.2
1,709,346	-				-1.6
1,709,370	-		DDA3937_RS07565	0.11	+2.2
1,709,399	+		DDA3937_RS07565	0.13	-2.1
1,709,462	+		DDA3937_RS07565	0.18	+2.2
1,709,462	+		DDA3937_RS07565	0.18	+0.6
1,709,462	+		DDA3937_RS07565	0.18	-1.6
1,709,463	-		DDA3937_RS07565	0.18	-1.4
1,709,484	-		DDA3937_RS07565	0.19	-0.2
1,709,521	-		DDA3937_RS07565	0.22	-2.1
1,709,621	-		DDA3937_RS07565	0.29	+1.0
1,709,621	-		DDA3937_RS07565	0.29	-1.0
1,709,621	-		DDA3937_RS07565	0.29	+2.7
1,709,639	+		DDA3937_RS07565	0.30	-0.2
1,709,640	-		DDA3937_RS07565	0.30	+0.1
1,709,640	-		DDA3937_RS07565	0.30	-0.2
1,709,640	-		DDA3937_RS07565	0.30	-0.4
1,709,703	-				-1.2
1,709,703	-		DDA3937_RS07565	0.35	-2.4