Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07515

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS07510 and DDA3937_RS07515 are separated by 33 nucleotidesDDA3937_RS07515 and DDA3937_RS07520 overlap by 41 nucleotidesDDA3937_RS07520 and DDA3937_RS07525 are separated by 22 nucleotides DDA3937_RS07510: DDA3937_RS07510 - iron-containing alcohol dehydrogenase family protein, at 1,695,553 to 1,696,656 _RS07510 DDA3937_RS07515: DDA3937_RS07515 - ABC transporter permease, at 1,696,690 to 1,697,556 _RS07515 DDA3937_RS07520: DDA3937_RS07520 - ABC transporter ATP-binding protein, at 1,697,516 to 1,698,367 _RS07520 DDA3937_RS07525: DDA3937_RS07525 - ABC transporter substrate-binding protein, at 1,698,390 to 1,699,370 _RS07525 Position (kb) 1696 1697 1698Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1695.750 kb on - strand, within DDA3937_RS07510at 1695.814 kb on + strand, within DDA3937_RS07510at 1695.885 kb on + strand, within DDA3937_RS07510at 1695.886 kb on - strand, within DDA3937_RS07510at 1695.886 kb on - strand, within DDA3937_RS07510at 1696.112 kb on + strand, within DDA3937_RS07510at 1696.113 kb on - strand, within DDA3937_RS07510at 1696.113 kb on - strand, within DDA3937_RS07510at 1696.127 kb on + strand, within DDA3937_RS07510at 1696.263 kb on + strand, within DDA3937_RS07510at 1696.263 kb on + strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.264 kb on - strand, within DDA3937_RS07510at 1696.265 kb on + strandat 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.265 kb on + strand, within DDA3937_RS07510at 1696.266 kb on - strand, within DDA3937_RS07510at 1696.266 kb on - strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.267 kb on + strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.268 kb on - strand, within DDA3937_RS07510at 1696.460 kb on + strand, within DDA3937_RS07510at 1696.484 kb on + strand, within DDA3937_RS07510at 1696.488 kb on - strand, within DDA3937_RS07510at 1696.488 kb on - strand, within DDA3937_RS07510at 1696.589 kb on + strandat 1696.589 kb on + strandat 1696.589 kb on + strandat 1696.590 kb on - strandat 1696.590 kb on - strandat 1696.590 kb on - strandat 1696.590 kb on - strandat 1696.590 kb on - strandat 1696.623 kb on + strandat 1696.628 kb on + strandat 1696.628 kb on + strandat 1696.628 kb on + strandat 1696.628 kb on + strandat 1696.629 kb on - strandat 1696.645 kb on + strandat 1696.692 kb on - strandat 1696.701 kb on + strandat 1696.808 kb on + strand, within DDA3937_RS07515at 1696.808 kb on + strand, within DDA3937_RS07515at 1696.808 kb on + strand, within DDA3937_RS07515at 1696.809 kb on - strand, within DDA3937_RS07515at 1696.809 kb on - strand, within DDA3937_RS07515at 1696.809 kb on - strand, within DDA3937_RS07515at 1696.809 kb on - strand, within DDA3937_RS07515at 1696.809 kb on - strandat 1696.897 kb on - strand, within DDA3937_RS07515at 1696.935 kb on + strand, within DDA3937_RS07515at 1696.936 kb on - strand, within DDA3937_RS07515at 1696.977 kb on - strandat 1696.997 kb on + strand, within DDA3937_RS07515at 1696.997 kb on + strand, within DDA3937_RS07515at 1696.997 kb on + strand, within DDA3937_RS07515at 1696.997 kb on + strand, within DDA3937_RS07515at 1696.998 kb on - strand, within DDA3937_RS07515at 1696.998 kb on - strand, within DDA3937_RS07515at 1696.998 kb on - strand, within DDA3937_RS07515at 1697.048 kb on + strand, within DDA3937_RS07515at 1697.048 kb on + strand, within DDA3937_RS07515at 1697.048 kb on + strand, within DDA3937_RS07515at 1697.261 kb on + strand, within DDA3937_RS07515at 1697.261 kb on + strand, within DDA3937_RS07515at 1697.261 kb on + strand, within DDA3937_RS07515at 1697.262 kb on - strand, within DDA3937_RS07515at 1697.277 kb on + strand, within DDA3937_RS07515at 1697.342 kb on - strand, within DDA3937_RS07515at 1697.448 kb on + strand, within DDA3937_RS07515at 1697.448 kb on + strand, within DDA3937_RS07515at 1697.448 kb on + strand, within DDA3937_RS07515at 1697.449 kb on - strand, within DDA3937_RS07515at 1697.449 kb on - strand, within DDA3937_RS07515at 1697.550 kb on + strandat 1697.550 kb on + strandat 1697.550 kb on + strandat 1697.550 kb on + strandat 1697.551 kb on - strandat 1697.551 kb on - strandat 1697.551 kb on - strandat 1697.551 kb on - strandat 1697.551 kb on - strandat 1697.551 kb on - strandat 1697.609 kb on + strand, within DDA3937_RS07520at 1698.115 kb on + strand, within DDA3937_RS07520at 1698.115 kb on + strand, within DDA3937_RS07520at 1698.115 kb on + strand, within DDA3937_RS07520at 1698.115 kb on + strand, within DDA3937_RS07520at 1698.115 kb on + strand, within DDA3937_RS07520at 1698.115 kb on + strand, within DDA3937_RS07520at 1698.116 kb on - strand, within DDA3937_RS07520at 1698.116 kb on - strand, within DDA3937_RS07520at 1698.116 kb on - strand, within DDA3937_RS07520at 1698.116 kb on - strand, within DDA3937_RS07520at 1698.290 kb on + strandat 1698.290 kb on + strandat 1698.291 kb on - strandat 1698.291 kb on - strandat 1698.391 kb on + strandat 1698.391 kb on + strandat 1698.391 kb on + strandat 1698.391 kb on + strandat 1698.391 kb on + strandat 1698.391 kb on + strandat 1698.391 kb on + strandat 1698.392 kb on - strandat 1698.392 kb on - strandat 1698.392 kb on - strandat 1698.427 kb on + strandat 1698.427 kb on + strandat 1698.427 kb on + strandat 1698.427 kb on + strandat 1698.428 kb on - strandat 1698.428 kb on - strandat 1698.428 kb on - strandat 1698.428 kb on - strandat 1698.487 kb on + strandat 1698.488 kb on - strand, within DDA3937_RS07525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
1,695,750 - DDA3937_RS07510 0.18 +1.7
1,695,814 + DDA3937_RS07510 0.24 -2.6
1,695,885 + DDA3937_RS07510 0.30 -1.8
1,695,886 - DDA3937_RS07510 0.30 -1.1
1,695,886 - DDA3937_RS07510 0.30 +0.2
1,696,112 + DDA3937_RS07510 0.51 -2.9
1,696,113 - DDA3937_RS07510 0.51 +3.3
1,696,113 - DDA3937_RS07510 0.51 +1.4
1,696,127 + DDA3937_RS07510 0.52 -1.2
1,696,263 + DDA3937_RS07510 0.64 -1.9
1,696,263 + DDA3937_RS07510 0.64 -1.8
1,696,264 - DDA3937_RS07510 0.64 +2.1
1,696,264 - DDA3937_RS07510 0.64 -0.4
1,696,264 - DDA3937_RS07510 0.64 +1.4
1,696,264 - DDA3937_RS07510 0.64 +0.8
1,696,265 + +1.8
1,696,265 + DDA3937_RS07510 0.64 +0.8
1,696,265 + DDA3937_RS07510 0.64 -1.2
1,696,265 + DDA3937_RS07510 0.64 +1.7
1,696,265 + DDA3937_RS07510 0.64 +0.8
1,696,265 + DDA3937_RS07510 0.64 +0.3
1,696,266 - DDA3937_RS07510 0.65 -2.5
1,696,266 - DDA3937_RS07510 0.65 +1.6
1,696,267 + DDA3937_RS07510 0.65 +0.1
1,696,267 + DDA3937_RS07510 0.65 -0.7
1,696,267 + DDA3937_RS07510 0.65 -0.6
1,696,267 + DDA3937_RS07510 0.65 -1.2
1,696,267 + DDA3937_RS07510 0.65 -1.4
1,696,267 + DDA3937_RS07510 0.65 -2.1
1,696,267 + DDA3937_RS07510 0.65 -1.3
1,696,267 + DDA3937_RS07510 0.65 -1.4
1,696,267 + DDA3937_RS07510 0.65 +0.3
1,696,267 + DDA3937_RS07510 0.65 +1.7
1,696,267 + DDA3937_RS07510 0.65 -0.9
1,696,267 + DDA3937_RS07510 0.65 -0.4
1,696,268 - DDA3937_RS07510 0.65 +2.0
1,696,268 - DDA3937_RS07510 0.65 +1.0
1,696,268 - DDA3937_RS07510 0.65 -3.7
1,696,268 - DDA3937_RS07510 0.65 -2.4
1,696,268 - DDA3937_RS07510 0.65 -1.4
1,696,268 - DDA3937_RS07510 0.65 -2.3
1,696,268 - DDA3937_RS07510 0.65 +1.2
1,696,268 - DDA3937_RS07510 0.65 -0.6
1,696,268 - DDA3937_RS07510 0.65 -3.3
1,696,268 - DDA3937_RS07510 0.65 -3.2
1,696,268 - DDA3937_RS07510 0.65 +0.6
1,696,268 - DDA3937_RS07510 0.65 -1.0
1,696,460 + DDA3937_RS07510 0.82 +1.2
1,696,484 + DDA3937_RS07510 0.84 -1.2
1,696,488 - DDA3937_RS07510 0.85 +2.0
1,696,488 - DDA3937_RS07510 0.85 -2.2
1,696,589 + -1.6
1,696,589 + -0.6
1,696,589 + -1.8
1,696,590 - -2.9
1,696,590 - -0.5
1,696,590 - +1.3
1,696,590 - -1.2
1,696,590 - -0.7
1,696,623 + +1.4
1,696,628 + -1.1
1,696,628 + -0.3
1,696,628 + -0.8
1,696,628 + -0.6
1,696,629 - -1.4
1,696,645 + -1.0
1,696,692 - +0.1
1,696,701 + -2.0
1,696,808 + DDA3937_RS07515 0.14 -2.3
1,696,808 + DDA3937_RS07515 0.14 -3.1
1,696,808 + DDA3937_RS07515 0.14 -0.6
1,696,809 - DDA3937_RS07515 0.14 -1.6
1,696,809 - DDA3937_RS07515 0.14 -1.0
1,696,809 - DDA3937_RS07515 0.14 +2.0
1,696,809 - DDA3937_RS07515 0.14 +1.2
1,696,809 - +0.4
1,696,897 - DDA3937_RS07515 0.24 -1.2
1,696,935 + DDA3937_RS07515 0.28 -2.4
1,696,936 - DDA3937_RS07515 0.28 -0.2
1,696,977 - +1.4
1,696,997 + DDA3937_RS07515 0.35 +0.0
1,696,997 + DDA3937_RS07515 0.35 +0.4
1,696,997 + DDA3937_RS07515 0.35 -1.0
1,696,997 + DDA3937_RS07515 0.35 -0.6
1,696,998 - DDA3937_RS07515 0.36 -1.2
1,696,998 - DDA3937_RS07515 0.36 -2.2
1,696,998 - DDA3937_RS07515 0.36 -0.9
1,697,048 + DDA3937_RS07515 0.41 -3.0
1,697,048 + DDA3937_RS07515 0.41 -1.4
1,697,048 + DDA3937_RS07515 0.41 +1.9
1,697,261 + DDA3937_RS07515 0.66 -2.6
1,697,261 + DDA3937_RS07515 0.66 -1.6
1,697,261 + DDA3937_RS07515 0.66 +1.5
1,697,262 - DDA3937_RS07515 0.66 -0.4
1,697,277 + DDA3937_RS07515 0.68 +0.7
1,697,342 - DDA3937_RS07515 0.75 -0.1
1,697,448 + DDA3937_RS07515 0.87 +1.6
1,697,448 + DDA3937_RS07515 0.87 -0.7
1,697,448 + DDA3937_RS07515 0.87 +1.1
1,697,449 - DDA3937_RS07515 0.88 +0.0
1,697,449 - DDA3937_RS07515 0.88 +0.9
1,697,550 + -1.6
1,697,550 + -0.6
1,697,550 + -0.2
1,697,550 + +0.5
1,697,551 - +0.6
1,697,551 - -0.9
1,697,551 - -1.5
1,697,551 - +1.4
1,697,551 - +0.5
1,697,551 - -2.7
1,697,609 + DDA3937_RS07520 0.11 -0.6
1,698,115 + DDA3937_RS07520 0.70 +0.7
1,698,115 + DDA3937_RS07520 0.70 +1.4
1,698,115 + DDA3937_RS07520 0.70 -1.2
1,698,115 + DDA3937_RS07520 0.70 +1.2
1,698,115 + DDA3937_RS07520 0.70 +0.1
1,698,115 + DDA3937_RS07520 0.70 +0.6
1,698,116 - DDA3937_RS07520 0.70 -1.2
1,698,116 - DDA3937_RS07520 0.70 +0.7
1,698,116 - DDA3937_RS07520 0.70 -0.9
1,698,116 - DDA3937_RS07520 0.70 -3.5
1,698,290 + -0.9
1,698,290 + -1.2
1,698,291 - -0.2
1,698,291 - +0.5
1,698,391 + -0.5
1,698,391 + -0.9
1,698,391 + +0.1
1,698,391 + +1.6
1,698,391 + -1.8
1,698,391 + -1.8
1,698,391 + +1.0
1,698,392 - +3.8
1,698,392 - +3.4
1,698,392 - +0.2
1,698,427 + -0.6
1,698,427 + +0.2
1,698,427 + -0.6
1,698,427 + -0.9
1,698,428 - -0.6
1,698,428 - -2.7
1,698,428 - -2.9
1,698,428 - -1.4
1,698,487 + -2.4
1,698,488 - DDA3937_RS07525 0.10 +1.4

Or see this region's nucleotide sequence