Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07140

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,605,524	-		DDA3937_RS07130	0.64	-0.2
1,605,662	-		DDA3937_RS07130	0.75	-0.1
1,605,773	-		DDA3937_RS07130	0.83	-2.6
1,605,789	+		DDA3937_RS07130	0.85	-1.4
1,605,803	+		DDA3937_RS07130	0.86	-1.4
1,605,803	+		DDA3937_RS07130	0.86	+0.9
1,605,804	-		DDA3937_RS07130	0.86	-0.9
1,605,804	-		DDA3937_RS07130	0.86	+0.6
1,605,804	-		DDA3937_RS07130	0.86	-2.3
1,605,804	-		DDA3937_RS07130	0.86	-1.1
1,605,804	-		DDA3937_RS07130	0.86	-2.2
1,605,807	+		DDA3937_RS07130	0.86	-2.0
1,605,898	+				-0.1
1,605,898	+				-1.2
1,605,898	+				-3.4
1,605,898	+				+0.7
1,605,898	+				-0.1
1,605,898	+				-1.1
1,605,898	+				-1.4
1,605,898	+				-1.9
1,605,899	-				-2.1
1,605,899	-				-1.5
1,605,899	-				-1.2
1,605,922	+				-0.6
1,605,923	-				+2.1
1,606,052	-				-0.4
1,606,127	+		DDA3937_RS07135	0.38	-0.8
1,606,128	-		DDA3937_RS07135	0.38	-2.3
1,606,128	-		DDA3937_RS07135	0.38	-0.6
1,606,154	+		DDA3937_RS07135	0.50	+0.3
1,606,154	+		DDA3937_RS07135	0.50	-1.2
1,606,175	+		DDA3937_RS07135	0.59	+0.7
1,606,281	+				-2.3
1,606,419	+				-0.4
1,606,492	+				+0.5
1,606,493	-				-0.5
1,606,504	+				-0.6
1,606,504	+				-2.1
1,606,505	-				-0.8
1,606,512	+				-2.8
1,606,653	+		DDA3937_RS07140	0.16	-3.1
1,606,653	+		DDA3937_RS07140	0.16	+1.6
1,606,653	+		DDA3937_RS07140	0.16	-0.8
1,606,653	+		DDA3937_RS07140	0.16	-2.2
1,606,653	+		DDA3937_RS07140	0.16	-1.0
1,606,654	-		DDA3937_RS07140	0.16	-1.4
1,606,656	+		DDA3937_RS07140	0.16	-1.8
1,606,656	+		DDA3937_RS07140	0.16	-1.2
1,606,656	+		DDA3937_RS07140	0.16	-3.2
1,606,657	-		DDA3937_RS07140	0.16	+0.2
1,606,657	-		DDA3937_RS07140	0.16	-2.0
1,606,657	-		DDA3937_RS07140	0.16	-3.1
1,606,666	+		DDA3937_RS07140	0.16	-1.8
1,606,666	+		DDA3937_RS07140	0.16	+1.8
1,606,667	-		DDA3937_RS07140	0.17	+0.4
1,606,667	-		DDA3937_RS07140	0.17	-0.5
1,606,667	-		DDA3937_RS07140	0.17	-1.7
1,606,668	+		DDA3937_RS07140	0.17	-3.0
1,606,668	+		DDA3937_RS07140	0.17	-1.3
1,606,668	+		DDA3937_RS07140	0.17	-1.9
1,606,668	+		DDA3937_RS07140	0.17	-1.0
1,606,668	+		DDA3937_RS07140	0.17	+0.5
1,606,668	+		DDA3937_RS07140	0.17	-1.7
1,606,669	-		DDA3937_RS07140	0.17	+0.0
1,606,669	-		DDA3937_RS07140	0.17	-0.7
1,606,669	-		DDA3937_RS07140	0.17	-0.0
1,606,669	-		DDA3937_RS07140	0.17	-2.5
1,606,669	-		DDA3937_RS07140	0.17	-3.9
1,606,669	-		DDA3937_RS07140	0.17	-2.9
1,606,669	-		DDA3937_RS07140	0.17	-1.9
1,606,764	+		DDA3937_RS07140	0.23	-1.2
1,606,817	-		DDA3937_RS07140	0.26	-0.9
1,606,891	+		DDA3937_RS07140	0.31	-2.7
1,606,891	+		DDA3937_RS07140	0.31	+2.6
1,606,891	+		DDA3937_RS07140	0.31	-1.5
1,606,891	+		DDA3937_RS07140	0.31	+0.2
1,606,891	+		DDA3937_RS07140	0.31	+0.0
1,606,892	-		DDA3937_RS07140	0.31	-2.9
1,606,892	-		DDA3937_RS07140	0.31	-0.5
1,607,027	+		DDA3937_RS07140	0.40	-1.4
1,607,027	+		DDA3937_RS07140	0.40	-0.9
1,607,027	+		DDA3937_RS07140	0.40	-2.9
1,607,027	+		DDA3937_RS07140	0.40	+0.5
1,607,027	+		DDA3937_RS07140	0.40	-1.6
1,607,028	-		DDA3937_RS07140	0.41	-1.2
1,607,046	+		DDA3937_RS07140	0.42	-2.3
1,607,046	+		DDA3937_RS07140	0.42	-0.1
1,607,046	+		DDA3937_RS07140	0.42	-0.2
1,607,067	+		DDA3937_RS07140	0.43	-1.2
1,607,067	+		DDA3937_RS07140	0.43	-1.5
1,607,067	+		DDA3937_RS07140	0.43	-2.2
1,607,068	-		DDA3937_RS07140	0.43	-1.4
1,607,068	-		DDA3937_RS07140	0.43	-0.5
1,607,068	-		DDA3937_RS07140	0.43	-1.8
1,607,068	-		DDA3937_RS07140	0.43	-3.3
1,607,068	-		DDA3937_RS07140	0.43	-3.9
1,607,068	-		DDA3937_RS07140	0.43	-2.0
1,607,068	-		DDA3937_RS07140	0.43	-4.1
1,607,079	+		DDA3937_RS07140	0.44	+0.2
1,607,079	+		DDA3937_RS07140	0.44	-1.9
1,607,079	+		DDA3937_RS07140	0.44	-3.3
1,607,079	+		DDA3937_RS07140	0.44	-2.8
1,607,079	+		DDA3937_RS07140	0.44	-1.7
1,607,079	+		DDA3937_RS07140	0.44	-1.9
1,607,080	-		DDA3937_RS07140	0.44	-0.5
1,607,080	-		DDA3937_RS07140	0.44	-1.7
1,607,080	-		DDA3937_RS07140	0.44	+0.8
1,607,094	+		DDA3937_RS07140	0.45	-1.2
1,607,094	+		DDA3937_RS07140	0.45	-1.6
1,607,094	+		DDA3937_RS07140	0.45	-0.8
1,607,094	+		DDA3937_RS07140	0.45	+0.2
1,607,094	+		DDA3937_RS07140	0.45	-0.0
1,607,094	+		DDA3937_RS07140	0.45	-0.0
1,607,095	-		DDA3937_RS07140	0.45	-1.6
1,607,095	-		DDA3937_RS07140	0.45	-2.3
1,607,095	-		DDA3937_RS07140	0.45	-2.2
1,607,095	-		DDA3937_RS07140	0.45	+1.8
1,607,095	-		DDA3937_RS07140	0.45	+0.0
1,607,095	-		DDA3937_RS07140	0.45	-3.3
1,607,095	-		DDA3937_RS07140	0.45	+0.7
1,607,097	+		DDA3937_RS07140	0.45	-2.7
1,607,097	+		DDA3937_RS07140	0.45	+0.3
1,607,097	+		DDA3937_RS07140	0.45	-2.2
1,607,097	+		DDA3937_RS07140	0.45	-0.7
1,607,097	+		DDA3937_RS07140	0.45	+1.2
1,607,097	+		DDA3937_RS07140	0.45	+1.0
1,607,098	-		DDA3937_RS07140	0.45	-0.4
1,607,098	-		DDA3937_RS07140	0.45	-1.8
1,607,098	-		DDA3937_RS07140	0.45	-0.2
1,607,098	-		DDA3937_RS07140	0.45	-0.2
1,607,132	+		DDA3937_RS07140	0.47	-1.5
1,607,132	+		DDA3937_RS07140	0.47	-2.6
1,607,132	+		DDA3937_RS07140	0.47	-1.5
1,607,132	+		DDA3937_RS07140	0.47	-1.5
1,607,132	+		DDA3937_RS07140	0.47	-1.4
1,607,133	-		DDA3937_RS07140	0.47	-1.1
1,607,274	+		DDA3937_RS07140	0.57	-0.5
1,607,274	+		DDA3937_RS07140	0.57	+1.3
1,607,444	-		DDA3937_RS07140	0.68	-2.1
1,607,457	+		DDA3937_RS07140	0.69	-0.3
1,607,457	+		DDA3937_RS07140	0.69	-3.0
1,607,566	-		DDA3937_RS07140	0.76	-1.8
1,607,566	-		DDA3937_RS07140	0.76	-2.2
1,607,566	-				-0.2
1,607,611	+		DDA3937_RS07140	0.79	-2.4
1,607,611	+		DDA3937_RS07140	0.79	-2.7
1,607,643	+		DDA3937_RS07140	0.81	+1.1
1,607,643	+		DDA3937_RS07140	0.81	-0.1
1,607,643	+		DDA3937_RS07140	0.81	+2.2
1,607,644	-		DDA3937_RS07140	0.81	+0.4
1,607,732	+		DDA3937_RS07140	0.87	-1.5
1,607,733	-		DDA3937_RS07140	0.87	-3.4
1,607,900	+				-0.2
1,607,900	+				-0.9
1,607,900	+				+0.9
1,607,900	+				-2.7
1,607,901	-				-1.6
1,607,901	-				-1.1
1,607,923	+				-1.3
1,607,924	-				-1.2
1,607,940	+				+1.1
1,607,940	+				-0.2
1,608,060	+				+0.8
1,608,166	+				-3.3
1,608,209	+				-1.8
1,608,209	+				-1.9
1,608,210	-				+1.6
1,608,225	+				+0.0
1,608,226	-				-1.9
1,608,276	+				-0.2
1,608,276	+				+2.4
1,608,277	-				-1.4
1,608,286	+				-0.1
1,608,309	+				-0.6
1,608,309	+				+1.1
1,608,378	-				+0.2
1,608,378	-				-1.2
1,608,378	-				-2.3
1,608,378	-				+2.4
1,608,412	+				-1.8
1,608,418	+				-0.1
1,608,437	-				-0.6
1,608,449	+				+0.3
1,608,450	-				-1.2
1,608,467	+				-0.4
1,608,467	+				-1.5
1,608,523	+				-1.4
1,608,524	-				-4.0
1,608,534	-				-3.0
1,608,543	+				+0.4
1,608,543	+				-0.6
1,608,613	-				+1.4
1,608,613	-				-2.3
1,608,613	-				+0.7
1,608,622	+				-2.2
1,608,622	+				-0.0
1,608,622	+				-1.4
1,608,622	+				-1.4
1,608,622	+				-2.8
1,608,622	+				-0.2
1,608,622	+				-2.9
1,608,622	+				+2.3
1,608,623	-				-2.6
1,608,634	+				+0.3
1,608,634	+				+0.9
1,608,634	+				+0.9
1,608,634	+				-0.6
1,608,634	+				-2.9
1,608,634	+				-0.2
1,608,634	+				-0.9
1,608,635	-				-0.7
1,608,635	-				-2.1
1,608,656	+				-0.3
1,608,656	+				-1.4
1,608,657	-				+0.7
1,608,682	+				+1.4
1,608,682	+				-2.2
1,608,682	+				-1.5
1,608,693	+				-0.2
1,608,693	+				-1.8
1,608,694	-				-2.3
1,608,694	-				-0.2
1,608,694	-				-0.7
1,608,696	+				-0.4
1,608,697	-				-1.7
1,608,720	+				-0.6
1,608,721	-				-2.8
1,608,721	-				-1.9
1,608,724	+				+0.1
1,608,725	-				-2.4
1,608,725	-				-0.2
1,608,793	+				-0.5