Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07010

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,571,293	+		DDA3937_RS07000	0.55	-1.6
1,571,407	+		DDA3937_RS07000	0.87	-1.8
1,571,473	-				-2.0
1,571,473	-				-1.8
1,571,473	-				-0.9
1,571,493	-				-0.2
1,571,514	+				-0.3
1,571,573	+		DDA3937_RS07005	0.22	-2.8
1,571,573	+				+0.4
1,571,574	-		DDA3937_RS07005	0.22	+0.8
1,571,574	-		DDA3937_RS07005	0.22	-1.3
1,571,574	-		DDA3937_RS07005	0.22	+2.0
1,571,727	+				+0.1
1,571,727	+				+1.2
1,571,728	-				+0.4
1,571,731	-				-1.8
1,571,731	-				+0.7
1,571,731	-				-1.8
1,571,731	-				-0.9
1,571,731	-				-0.6
1,571,731	-				-0.4
1,571,733	+				-0.6
1,571,733	+				-1.2
1,571,733	+				+1.3
1,571,733	+				-2.0
1,571,734	-				-0.9
1,571,734	-				-0.0
1,571,734	-				-2.1
1,571,734	-				+1.4
1,571,734	-				-1.9
1,571,734	-				-1.1
1,571,737	+				-3.4
1,571,737	+				-1.2
1,571,738	-				-2.5
1,571,749	-				-1.9
1,571,781	-				-0.9
1,571,781	-				+0.5
1,571,781	-				-2.2
1,571,782	+				-0.6
1,571,782	+				-2.5
1,571,782	+				-1.3
1,571,782	+				-1.2
1,571,782	+				-1.5
1,571,782	+				-3.1
1,571,783	-				-0.1
1,571,783	-				-1.9
1,571,783	-				-0.6
1,571,783	-				-0.8
1,571,783	-				-2.9
1,571,786	-				+1.3
1,571,794	-				-0.8
1,571,794	-				+0.8
1,571,815	+				-0.3
1,571,816	-				+2.0
1,571,952	+				+0.9
1,571,952	+				+1.0
1,571,952	+				-2.4
1,571,953	-				+0.4
1,571,953	-				-1.5
1,571,997	+				-0.2
1,571,998	-				-0.4
1,571,998	-				-1.2
1,572,071	+				-0.9
1,572,071	+				-1.6
1,572,071	+				-2.4
1,572,071	+				+0.3
1,572,071	+				-0.6
1,572,071	+				-1.4
1,572,071	+				-2.0
1,572,071	+				+2.0
1,572,071	+				+1.5
1,572,071	+				+0.1
1,572,072	-				-1.9
1,572,072	-				+0.4
1,572,075	+				-2.3
1,572,075	+				+0.1
1,572,075	+				-2.3
1,572,075	+				+1.1
1,572,075	+				-0.2
1,572,076	-				-1.6
1,572,076	-				+0.4
1,572,076	-				-0.6
1,572,076	-				-2.2
1,572,076	-				-1.2
1,572,112	-				-2.1
1,572,112	-				-0.2
1,572,112	-				+1.9
1,572,112	-				+0.8
1,572,113	+				-1.6
1,572,113	+				-0.7
1,572,114	-				-1.8
1,572,114	-				-2.3
1,572,114	-				-0.6
1,572,155	+				-1.2
1,572,155	+				-1.6
1,572,231	+				-0.3
1,572,407	+		DDA3937_RS07010	0.22	-2.2
1,572,407	+		DDA3937_RS07010	0.22	-2.7
1,572,407	+		DDA3937_RS07010	0.22	-2.7
1,572,407	+		DDA3937_RS07010	0.22	+0.4
1,572,408	-		DDA3937_RS07010	0.22	-3.3
1,572,408	-		DDA3937_RS07010	0.22	-1.0
1,572,408	-		DDA3937_RS07010	0.22	-0.9
1,572,411	+		DDA3937_RS07010	0.22	+1.0
1,572,411	+		DDA3937_RS07010	0.22	-1.0
1,572,413	+		DDA3937_RS07010	0.22	-0.9
1,572,413	+		DDA3937_RS07010	0.22	-3.4
1,572,413	+		DDA3937_RS07010	0.22	-0.2
1,572,519	-		DDA3937_RS07010	0.31	-0.6
1,572,618	+		DDA3937_RS07010	0.40	-0.9
1,572,618	+		DDA3937_RS07010	0.40	-1.1
1,572,618	+		DDA3937_RS07010	0.40	-1.4
1,572,619	-		DDA3937_RS07010	0.40	-1.6
1,572,619	-		DDA3937_RS07010	0.40	+0.2
1,572,619	-		DDA3937_RS07010	0.40	-0.6
1,572,619	-		DDA3937_RS07010	0.40	-0.6
1,572,619	-		DDA3937_RS07010	0.40	+0.0
1,572,619	-		DDA3937_RS07010	0.40	+3.5
1,572,619	-		DDA3937_RS07010	0.40	+1.0
1,572,764	+		DDA3937_RS07010	0.53	-0.6
1,572,787	+		DDA3937_RS07010	0.54	-2.9
1,572,788	-		DDA3937_RS07010	0.55	-2.7
1,572,793	+		DDA3937_RS07010	0.55	-0.2
1,572,794	-		DDA3937_RS07010	0.55	-1.6
1,572,800	+		DDA3937_RS07010	0.56	-0.5
1,572,801	-		DDA3937_RS07010	0.56	-1.4
1,572,845	+		DDA3937_RS07010	0.59	-2.7
1,572,845	+		DDA3937_RS07010	0.59	-2.2
1,572,846	-		DDA3937_RS07010	0.60	-2.9
1,573,014	+		DDA3937_RS07010	0.74	-2.0
1,573,014	+		DDA3937_RS07010	0.74	-2.4
1,573,014	+		DDA3937_RS07010	0.74	+2.2
1,573,015	-		DDA3937_RS07010	0.74	+0.2
1,573,015	-		DDA3937_RS07010	0.74	-0.6
1,573,015	-		DDA3937_RS07010	0.74	-3.5
1,573,015	-				-0.2
1,573,018	-		DDA3937_RS07010	0.74	-1.2
1,573,048	+		DDA3937_RS07010	0.77	+0.3
1,573,048	+		DDA3937_RS07010	0.77	+0.3
1,573,105	+		DDA3937_RS07010	0.82	-1.0
1,573,105	+		DDA3937_RS07010	0.82	-1.8
1,573,106	-		DDA3937_RS07010	0.82	-2.3
1,573,186	+		DDA3937_RS07010	0.89	-2.1
1,573,223	+				-0.9
1,573,223	+				+1.9
1,573,223	+				+0.8
1,573,224	-				-2.2
1,573,224	-				+1.5
1,573,233	+				-0.6
1,573,344	+				+0.3
1,573,365	-				-0.1
1,573,419	+				+1.1
1,573,444	-				-0.1
1,573,561	-				-0.6
1,573,584	+				-1.9
1,573,640	-				-1.9
1,573,653	-				-2.2
1,573,702	-				-1.2
1,573,767	+				+0.4
1,573,770	+				-1.4
1,573,771	-				-0.6
1,573,859	+				-1.7
1,573,860	-				-2.5
1,573,885	+				+0.9
1,573,885	+				-1.8
1,573,885	+				-0.1
1,573,885	+				-0.4
1,573,886	-				-1.2
1,573,918	-				+0.4
1,573,921	+				-1.2
1,573,972	-				-2.1
1,573,979	-				-3.9
1,574,017	+				+1.0
1,574,018	-				+1.1
1,574,110	+				+1.7
1,574,110	+				-3.0
1,574,110	+				+0.4
1,574,110	+				-0.1
1,574,110	+				+0.4
1,574,110	+				+1.3
1,574,111	-				-0.1
1,574,111	-				-1.1
1,574,111	-				-2.4
1,574,111	-				+1.1
1,574,173	+				-2.9
1,574,173	+				+1.5
1,574,173	+				-1.9
1,574,173	+				-0.9
1,574,174	-				-0.9
1,574,174	-				+1.4
1,574,174	-				-0.6
1,574,178	+				-1.4
1,574,179	-				-0.2
1,574,179	-				+1.9
1,574,179	-				-1.7
1,574,179	-				+3.1
1,574,179	-				+0.4
1,574,276	-				-1.2
1,574,284	-				+0.2