Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06860 and DDA3937_RS06865 overlap by 4 nucleotides DDA3937_RS06865 and DDA3937_RS06870 are separated by 29 nucleotides DDA3937_RS06870 and DDA3937_RS06875 overlap by 8 nucleotides
DDA3937_RS06860: DDA3937_RS06860 - hemin-degrading factor, at 1,536,104 to 1,537,135
_RS06860
DDA3937_RS06865: DDA3937_RS06865 - hemin ABC transporter substrate-binding protein, at 1,537,132 to 1,538,001
_RS06865
DDA3937_RS06870: DDA3937_RS06870 - iron ABC transporter permease, at 1,538,031 to 1,538,987
_RS06870
DDA3937_RS06875: DDA3937_RS06875 - heme ABC transporter ATP-binding protein, at 1,538,980 to 1,539,774
_RS06875
Position (kb) 1538
1539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1537.142 kb on + strand at 1537.142 kb on + strand at 1537.143 kb on - strand at 1537.143 kb on - strand at 1537.143 kb on - strand at 1537.269 kb on + strand, within DDA3937_RS06865 at 1537.269 kb on + strand, within DDA3937_RS06865 at 1537.269 kb on + strand, within DDA3937_RS06865 at 1537.370 kb on - strand, within DDA3937_RS06865 at 1537.383 kb on - strand, within DDA3937_RS06865 at 1537.563 kb on - strand, within DDA3937_RS06865 at 1537.662 kb on + strand, within DDA3937_RS06865 at 1537.730 kb on + strand, within DDA3937_RS06865 at 1537.830 kb on + strand at 1537.831 kb on - strand, within DDA3937_RS06865 at 1538.148 kb on + strand, within DDA3937_RS06870 at 1538.149 kb on - strand, within DDA3937_RS06870 at 1538.149 kb on - strand, within DDA3937_RS06870 at 1538.547 kb on - strand, within DDA3937_RS06870 at 1538.671 kb on - strand, within DDA3937_RS06870 at 1538.671 kb on - strand, within DDA3937_RS06870 at 1539.026 kb on - strand at 1539.109 kb on - strand, within DDA3937_RS06875 at 1539.120 kb on + strand, within DDA3937_RS06875 at 1539.126 kb on + strand, within DDA3937_RS06875 at 1539.127 kb on - strand, within DDA3937_RS06875 at 1539.252 kb on + strand, within DDA3937_RS06875 at 1539.252 kb on + strand, within DDA3937_RS06875 at 1539.253 kb on - strand, within DDA3937_RS06875 at 1539.255 kb on + strand, within DDA3937_RS06875 at 1539.256 kb on - strand, within DDA3937_RS06875 at 1539.256 kb on - strand, within DDA3937_RS06875 at 1539.256 kb on - strand, within DDA3937_RS06875 at 1539.256 kb on - strand, within DDA3937_RS06875 at 1539.279 kb on - strand, within DDA3937_RS06875 at 1539.388 kb on + strand, within DDA3937_RS06875 at 1539.389 kb on - strand, within DDA3937_RS06875 at 1539.748 kb on - strand at 1539.838 kb on + strand at 1539.838 kb on + strand at 1539.839 kb on - strand at 1539.841 kb on + strand at 1539.842 kb on - strand at 1539.916 kb on + strand at 1539.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,537,142 + +1.7 1,537,142 + -0.5 1,537,143 - -1.7 1,537,143 - -1.2 1,537,143 - +0.1 1,537,269 + DDA3937_RS06865 0.16 +1.8 1,537,269 + DDA3937_RS06865 0.16 -0.9 1,537,269 + DDA3937_RS06865 0.16 -1.9 1,537,370 - DDA3937_RS06865 0.27 -0.3 1,537,383 - DDA3937_RS06865 0.29 +0.4 1,537,563 - DDA3937_RS06865 0.50 +2.7 1,537,662 + DDA3937_RS06865 0.61 +0.4 1,537,730 + DDA3937_RS06865 0.69 +0.1 1,537,830 + -0.6 1,537,831 - DDA3937_RS06865 0.80 +0.8 1,538,148 + DDA3937_RS06870 0.12 -1.6 1,538,149 - DDA3937_RS06870 0.12 -2.4 1,538,149 - DDA3937_RS06870 0.12 -0.6 1,538,547 - DDA3937_RS06870 0.54 -0.9 1,538,671 - DDA3937_RS06870 0.67 -0.3 1,538,671 - DDA3937_RS06870 0.67 -1.5 1,539,026 - -2.7 1,539,109 - DDA3937_RS06875 0.16 -1.8 1,539,120 + DDA3937_RS06875 0.18 -0.4 1,539,126 + DDA3937_RS06875 0.18 +1.4 1,539,127 - DDA3937_RS06875 0.18 -1.9 1,539,252 + DDA3937_RS06875 0.34 +1.5 1,539,252 + DDA3937_RS06875 0.34 -1.6 1,539,253 - DDA3937_RS06875 0.34 +2.4 1,539,255 + DDA3937_RS06875 0.35 -2.0 1,539,256 - DDA3937_RS06875 0.35 -1.2 1,539,256 - DDA3937_RS06875 0.35 +0.1 1,539,256 - DDA3937_RS06875 0.35 +0.4 1,539,256 - DDA3937_RS06875 0.35 -0.5 1,539,279 - DDA3937_RS06875 0.38 -0.4 1,539,388 + DDA3937_RS06875 0.51 +0.3 1,539,389 - DDA3937_RS06875 0.51 -0.7 1,539,748 - -1.4 1,539,838 + -3.5 1,539,838 + -1.2 1,539,839 - +1.6 1,539,841 + -3.0 1,539,842 - -3.0 1,539,916 + -1.6 1,539,919 - -1.4
Or see this region's nucleotide sequence