Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06835

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,530,147	+		DDA3937_RS06830	0.33	+1.4
1,530,147	+		DDA3937_RS06830	0.33	-1.0
1,530,216	+		DDA3937_RS06830	0.40	-2.3
1,530,217	-		DDA3937_RS06830	0.40	-2.3
1,530,217	-		DDA3937_RS06830	0.40	-0.1
1,530,268	+		DDA3937_RS06830	0.45	-2.0
1,530,268	+		DDA3937_RS06830	0.45	-0.9
1,530,268	+		DDA3937_RS06830	0.45	-2.5
1,530,268	+		DDA3937_RS06830	0.45	-2.2
1,530,268	+		DDA3937_RS06830	0.45	-2.3
1,530,268	+		DDA3937_RS06830	0.45	-1.6
1,530,268	+		DDA3937_RS06830	0.45	-0.6
1,530,269	-		DDA3937_RS06830	0.45	-2.3
1,530,269	-		DDA3937_RS06830	0.45	-1.6
1,530,269	-		DDA3937_RS06830	0.45	+2.7
1,530,287	+		DDA3937_RS06830	0.46	+0.4
1,530,287	+		DDA3937_RS06830	0.46	+0.5
1,530,287	+		DDA3937_RS06830	0.46	+1.9
1,530,287	+		DDA3937_RS06830	0.46	+0.7
1,530,287	+		DDA3937_RS06830	0.46	-0.9
1,530,288	-		DDA3937_RS06830	0.46	+0.6
1,530,288	-		DDA3937_RS06830	0.46	-1.6
1,530,288	-		DDA3937_RS06830	0.46	+1.2
1,530,288	-		DDA3937_RS06830	0.46	+2.6
1,530,291	+		DDA3937_RS06830	0.47	-3.5
1,530,291	+		DDA3937_RS06830	0.47	-1.5
1,530,291	+		DDA3937_RS06830	0.47	+0.6
1,530,291	+		DDA3937_RS06830	0.47	-0.3
1,530,291	+		DDA3937_RS06830	0.47	-1.2
1,530,291	+		DDA3937_RS06830	0.47	+0.7
1,530,291	+		DDA3937_RS06830	0.47	-1.4
1,530,291	+		DDA3937_RS06830	0.47	-3.6
1,530,291	+		DDA3937_RS06830	0.47	-0.4
1,530,291	+		DDA3937_RS06830	0.47	-0.4
1,530,291	+		DDA3937_RS06830	0.47	-3.1
1,530,291	+		DDA3937_RS06830	0.47	+0.5
1,530,291	+		DDA3937_RS06830	0.47	-0.2
1,530,291	+		DDA3937_RS06830	0.47	-1.7
1,530,292	-		DDA3937_RS06830	0.47	-1.4
1,530,292	-		DDA3937_RS06830	0.47	-0.5
1,530,292	-		DDA3937_RS06830	0.47	+0.6
1,530,292	-		DDA3937_RS06830	0.47	-0.2
1,530,292	-		DDA3937_RS06830	0.47	+1.6
1,530,292	-		DDA3937_RS06830	0.47	-2.5
1,530,292	-		DDA3937_RS06830	0.47	-2.2
1,530,292	-		DDA3937_RS06830	0.47	-2.3
1,530,296	-		DDA3937_RS06830	0.47	+0.9
1,530,296	-		DDA3937_RS06830	0.47	-2.4
1,530,296	-		DDA3937_RS06830	0.47	-2.3
1,530,323	-		DDA3937_RS06830	0.50	-2.2
1,530,323	-		DDA3937_RS06830	0.50	-2.2
1,530,387	+		DDA3937_RS06830	0.56	+0.7
1,530,387	+		DDA3937_RS06830	0.56	-1.7
1,530,388	-				-0.6
1,530,400	+		DDA3937_RS06830	0.57	+2.5
1,530,400	+		DDA3937_RS06830	0.57	+0.6
1,530,400	+		DDA3937_RS06830	0.57	+0.4
1,530,400	+		DDA3937_RS06830	0.57	+1.1
1,530,400	+		DDA3937_RS06830	0.57	-1.0
1,530,412	+		DDA3937_RS06830	0.58	+0.3
1,530,467	+		DDA3937_RS06830	0.63	+1.6
1,530,516	+		DDA3937_RS06830	0.68	-1.7
1,530,517	-		DDA3937_RS06830	0.68	+1.0
1,530,517	-		DDA3937_RS06830	0.68	-2.3
1,530,517	-		DDA3937_RS06830	0.68	-0.9
1,530,666	+		DDA3937_RS06830	0.82	-0.5
1,530,666	+		DDA3937_RS06830	0.82	+1.9
1,530,667	-		DDA3937_RS06830	0.82	+0.3
1,530,667	-		DDA3937_RS06830	0.82	-1.4
1,530,689	-		DDA3937_RS06830	0.84	-2.2
1,530,701	+		DDA3937_RS06830	0.85	-1.9
1,530,701	+		DDA3937_RS06830	0.85	+1.3
1,530,701	+		DDA3937_RS06830	0.85	-1.6
1,530,701	+		DDA3937_RS06830	0.85	-2.3
1,530,701	+		DDA3937_RS06830	0.85	-1.0
1,530,701	+		DDA3937_RS06830	0.85	+1.6
1,530,701	+		DDA3937_RS06830	0.85	+1.1
1,530,701	+		DDA3937_RS06830	0.85	-0.1
1,530,701	+		DDA3937_RS06830	0.85	-0.9
1,530,701	+		DDA3937_RS06830	0.85	+3.1
1,530,702	-		DDA3937_RS06830	0.85	-2.6
1,530,702	-		DDA3937_RS06830	0.85	-0.1
1,530,702	-		DDA3937_RS06830	0.85	+0.8
1,530,702	-		DDA3937_RS06830	0.85	-1.4
1,530,702	-		DDA3937_RS06830	0.85	+0.4
1,530,702	-		DDA3937_RS06830	0.85	-1.7
1,530,702	-		DDA3937_RS06830	0.85	-2.6
1,530,778	+				-0.4
1,530,779	-				-1.6
1,530,779	-				-1.8
1,530,814	+				-1.7
1,530,815	-				+0.1
1,530,815	-				+1.4
1,530,882	+				-1.6
1,530,888	+				-1.6
1,530,889	-				-0.4
1,530,889	-				-2.5
1,530,889	-				+0.8
1,530,893	+				-0.2
1,530,894	-				+2.1
1,530,894	-				+1.1
1,530,903	+				+0.2
1,530,903	+				-0.9
1,530,903	+				-0.9
1,530,904	-				-1.9
1,530,904	-				+2.1
1,530,904	-				+0.8
1,530,908	-				-1.6
1,530,908	-				-0.2
1,530,908	-				-0.0
1,530,908	-				-1.5
1,530,921	+				-3.9
1,530,921	+				-1.4
1,530,922	-				-1.9
1,530,922	-				+0.7
1,530,922	-				+0.7
1,530,931	+				-1.2
1,530,935	+				+1.4
1,530,935	+				-1.3
1,530,935	+				-0.6
1,530,935	+				-2.7
1,530,936	-				-0.9
1,530,943	+				-2.5
1,530,943	+				-0.2
1,530,944	-				-1.9
1,530,944	-				-0.7
1,530,945	+				+0.4
1,530,945	+				-1.7
1,530,949	+				+1.1
1,530,949	+				-0.9
1,530,949	+				+2.2
1,530,949	+				+2.0
1,530,949	+				+0.7
1,530,950	-				-0.6
1,530,950	-				-0.3
1,530,963	+				+0.3
1,530,964	-				-0.1
1,531,218	-		DDA3937_RS06835	0.30	+1.2
1,531,363	+		DDA3937_RS06835	0.46	-0.3
1,531,363	+		DDA3937_RS06835	0.46	-2.6
1,531,376	-		DDA3937_RS06835	0.48	-1.9
1,531,570	+		DDA3937_RS06835	0.69	-0.6
1,531,663	+		DDA3937_RS06835	0.80	-2.0
1,531,664	-		DDA3937_RS06835	0.80	-2.5
1,531,664	-		DDA3937_RS06835	0.80	-0.5
1,531,664	-		DDA3937_RS06835	0.80	+0.0
1,531,690	+		DDA3937_RS06835	0.83	-1.4
1,531,691	-		DDA3937_RS06835	0.83	-1.2
1,531,792	+				-0.3
1,531,792	+				-0.2
1,531,792	+				+0.2
1,531,793	-				+1.0
1,531,868	+				+0.0
1,531,869	-				-0.2
1,531,869	-				+2.8
1,531,880	-				+0.4
1,531,881	+				+1.1
1,531,881	+				-1.7
1,531,881	+				-0.6
1,531,881	+				+0.4
1,531,881	+				+0.1
1,531,882	-				+2.0
1,531,882	-				-2.4
1,531,882	-				-1.9
1,531,882	-				+0.4
1,531,928	-				+0.8
1,531,928	-				-0.6
1,531,958	+				-2.0
1,531,992	+				-1.2
1,531,992	+				-1.2
1,531,992	+				-1.8
1,531,993	-				-2.0
1,531,993	-				-0.2
1,531,999	+				-0.2
1,532,096	+		DDA3937_RS06840	0.14	-0.4
1,532,157	+		DDA3937_RS06840	0.26	-0.2
1,532,163	+		DDA3937_RS06840	0.27	+0.9
1,532,187	-		DDA3937_RS06840	0.32	-2.3
1,532,237	+		DDA3937_RS06840	0.42	+2.4
1,532,237	+		DDA3937_RS06840	0.42	-3.1
1,532,237	+		DDA3937_RS06840	0.42	-1.2
1,532,238	-		DDA3937_RS06840	0.42	-1.7
1,532,238	-		DDA3937_RS06840	0.42	-3.5
1,532,293	+		DDA3937_RS06840	0.53	+1.1
1,532,293	+		DDA3937_RS06840	0.53	-0.5
1,532,294	-		DDA3937_RS06840	0.53	-0.9
1,532,294	-		DDA3937_RS06840	0.53	+0.1
1,532,294	-		DDA3937_RS06840	0.53	-0.9
1,532,294	-		DDA3937_RS06840	0.53	+3.0
1,532,295	+		DDA3937_RS06840	0.53	+0.1
1,532,316	+		DDA3937_RS06840	0.57	-0.9
1,532,316	+		DDA3937_RS06840	0.57	+1.3
1,532,586	+				-3.2
1,532,587	-				-1.6
1,532,597	+				-1.6
1,532,597	+				+0.4
1,532,597	+				-1.7
1,532,603	+				-2.3
1,532,764	+				-2.4
1,532,764	+				-1.7
1,532,764	+				+1.1
1,532,765	-				+1.5