Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06815

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,524,297	+				-1.4
1,524,301	-				-1.4
1,524,301	-				-1.6
1,524,301	-				-2.4
1,524,301	-				+0.8
1,524,301	-				+0.4
1,524,301	-				-2.8
1,524,301	-				-3.9
1,524,309	+				-1.9
1,524,371	+				-3.6
1,524,372	-				-2.6
1,524,372	-				-1.9
1,524,372	-				-0.6
1,524,375	+				-1.7
1,524,375	+				-3.2
1,524,375	+				-2.8
1,524,376	-				-1.4
1,524,376	-				-2.2
1,524,376	-				-3.8
1,524,376	-				-1.2
1,524,376	-				-2.7
1,524,377	+				-3.5
1,524,378	-				-0.2
1,524,384	-				-0.6
1,524,384	-				-0.6
1,524,390	-				-2.3
1,524,401	-				-3.5
1,524,401	-				-0.9
1,524,401	-				-0.9
1,524,423	+				+0.3
1,524,426	+				-1.4
1,524,427	-				-1.4
1,524,498	+				-2.4
1,524,506	-				-0.2
1,524,563	+				+1.7
1,524,571	+				-2.7
1,524,571	+				-0.3
1,524,571	+				-1.4
1,524,572	-				-1.6
1,524,620	-				-3.1
1,524,679	-				+0.4
1,524,739	+				-0.9
1,524,741	+				-1.1
1,524,741	+				-1.2
1,524,742	-				+2.4
1,524,789	+				-1.7
1,524,790	-				-1.7
1,524,805	+				-2.2
1,524,806	-				+0.1
1,524,932	-				+1.4
1,524,949	-				-1.7
1,525,100	+		DDA3937_RS06810	0.60	-2.2
1,525,100	+		DDA3937_RS06810	0.60	-0.6
1,525,303	+				+1.0
1,525,304	-				+0.3
1,525,304	-				+0.1
1,525,455	+		DDA3937_RS06815	0.25	-3.2
1,525,456	-		DDA3937_RS06815	0.25	-0.1
1,525,467	+		DDA3937_RS06815	0.27	-1.6
1,525,467	+		DDA3937_RS06815	0.27	-0.9
1,525,556	+		DDA3937_RS06815	0.40	-3.2
1,525,556	+		DDA3937_RS06815	0.40	+0.2
1,525,557	-		DDA3937_RS06815	0.40	-1.9
1,525,697	+				+0.4
1,525,698	-		DDA3937_RS06815	0.61	-1.9
1,525,752	-		DDA3937_RS06815	0.69	-1.4
1,525,781	+		DDA3937_RS06815	0.74	-0.6
1,525,842	+		DDA3937_RS06815	0.83	-0.2
1,525,842	+		DDA3937_RS06815	0.83	-1.1
1,525,843	-		DDA3937_RS06815	0.83	-2.3
1,525,843	-		DDA3937_RS06815	0.83	-0.9
1,525,843	-		DDA3937_RS06815	0.83	+1.4
1,525,845	-		DDA3937_RS06815	0.83	-0.9
1,525,894	-				-0.9
1,525,894	-				+0.9
1,525,894	-				-2.6
1,525,899	+				-2.4
1,525,899	+				-0.6
1,525,899	+				+0.3
1,525,899	+				-0.9
1,525,899	+				-0.2
1,525,899	+				-1.7
1,525,899	+				+0.7
1,525,899	+				-1.3
1,525,899	+				-0.9
1,525,899	+				-0.2
1,525,899	+				+1.0
1,525,899	+				+0.2
1,525,899	+				-2.0
1,525,899	+				+0.4
1,525,899	+				-1.0
1,525,900	-				-3.9
1,525,900	-				-0.2
1,525,900	-				+0.6
1,525,900	-				+0.3
1,525,900	-				-1.2
1,525,900	-				+0.7
1,525,900	-				-2.9
1,525,900	-				+0.2
1,525,900	-				-0.3
1,525,900	-				-1.4
1,525,900	-				-0.1
1,525,900	-				-1.6
1,525,900	-				-1.5
1,525,901	+				-0.2
1,525,902	-				+0.0
1,525,902	-				-1.7
1,525,902	-				+1.1
1,525,947	+				+0.8
1,526,046	+		DDA3937_RS06820	0.10	-0.9
1,526,046	+		DDA3937_RS06820	0.10	+0.4
1,526,047	-		DDA3937_RS06820	0.10	+2.8
1,526,047	-		DDA3937_RS06820	0.10	-3.9
1,526,153	-		DDA3937_RS06820	0.24	-2.3
1,526,217	+		DDA3937_RS06820	0.32	-2.7
1,526,217	+		DDA3937_RS06820	0.32	-0.1
1,526,218	-		DDA3937_RS06820	0.32	+1.3
1,526,218	-		DDA3937_RS06820	0.32	+0.6
1,526,277	+		DDA3937_RS06820	0.40	-0.2
1,526,277	+		DDA3937_RS06820	0.40	-1.4
1,526,277	+		DDA3937_RS06820	0.40	+0.4
1,526,278	-		DDA3937_RS06820	0.40	-1.5
1,526,278	-		DDA3937_RS06820	0.40	-1.2
1,526,278	-		DDA3937_RS06820	0.40	+0.7
1,526,278	-		DDA3937_RS06820	0.40	-1.0
1,526,278	-		DDA3937_RS06820	0.40	-0.3
1,526,278	-		DDA3937_RS06820	0.40	-1.0
1,526,278	-		DDA3937_RS06820	0.40	-0.6
1,526,279	+		DDA3937_RS06820	0.40	-0.5
1,526,279	+		DDA3937_RS06820	0.40	+0.5
1,526,307	-		DDA3937_RS06820	0.43	+4.4
1,526,388	+		DDA3937_RS06820	0.54	+0.5
1,526,388	+		DDA3937_RS06820	0.54	-1.2
1,526,388	+		DDA3937_RS06820	0.54	-1.6
1,526,388	+		DDA3937_RS06820	0.54	+1.0
1,526,388	+		DDA3937_RS06820	0.54	-1.5
1,526,388	+		DDA3937_RS06820	0.54	-2.7
1,526,388	+		DDA3937_RS06820	0.54	-1.7
1,526,388	+		DDA3937_RS06820	0.54	+0.4
1,526,388	+		DDA3937_RS06820	0.54	-1.4
1,526,389	-		DDA3937_RS06820	0.54	-0.2
1,526,389	-		DDA3937_RS06820	0.54	-3.5
1,526,389	-		DDA3937_RS06820	0.54	+1.1
1,526,389	-		DDA3937_RS06820	0.54	-2.2
1,526,389	-		DDA3937_RS06820	0.54	-2.4
1,526,389	-		DDA3937_RS06820	0.54	+1.7
1,526,389	-		DDA3937_RS06820	0.54	-1.9
1,526,389	-		DDA3937_RS06820	0.54	+0.3
1,526,389	-		DDA3937_RS06820	0.54	+0.7
1,526,391	-		DDA3937_RS06820	0.54	-1.6
1,526,391	-		DDA3937_RS06820	0.54	+1.3
1,526,397	+		DDA3937_RS06820	0.55	-0.6
1,526,397	+		DDA3937_RS06820	0.55	+0.6
1,526,398	-		DDA3937_RS06820	0.55	-1.9
1,526,398	-		DDA3937_RS06820	0.55	-0.9
1,526,517	+		DDA3937_RS06820	0.70	-1.9
1,526,517	+		DDA3937_RS06820	0.70	-1.5
1,526,517	+		DDA3937_RS06820	0.70	-3.1
1,526,518	-		DDA3937_RS06820	0.71	-1.9
1,526,518	-		DDA3937_RS06820	0.71	+0.7
1,526,518	-		DDA3937_RS06820	0.71	-2.7
1,526,518	-		DDA3937_RS06820	0.71	-0.4
1,526,518	-		DDA3937_RS06820	0.71	-1.3
1,526,693	+				+0.8
1,526,693	+				-0.3
1,526,693	+				-0.2
1,526,694	-				+0.8
1,526,694	-				-0.0
1,526,721	+				-1.1
1,526,721	+				+2.2
1,526,745	+				-0.7
1,526,745	+				-2.7
1,526,746	-				-2.7
1,526,865	-				-1.9
1,526,867	+				-0.6