Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05990

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05985 and DDA3937_RS05990 are separated by 200 nucleotidesDDA3937_RS05990 and DDA3937_RS05995 overlap by 1 nucleotides DDA3937_RS05985: DDA3937_RS05985 - ABC transporter substrate-binding protein, at 1,348,342 to 1,349,451 _RS05985 DDA3937_RS05990: DDA3937_RS05990 - amino acid ABC transporter permease, at 1,349,652 to 1,350,497 _RS05990 DDA3937_RS05995: DDA3937_RS05995 - transporter substrate-binding domain-containing protein, at 1,350,497 to 1,351,318 _RS05995 Position (kb) 1349 1350 1351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1348.685 kb on + strand, within DDA3937_RS05985at 1348.685 kb on + strand, within DDA3937_RS05985at 1348.685 kb on + strand, within DDA3937_RS05985at 1348.685 kb on + strand, within DDA3937_RS05985at 1348.686 kb on - strand, within DDA3937_RS05985at 1348.686 kb on - strand, within DDA3937_RS05985at 1348.735 kb on + strand, within DDA3937_RS05985at 1348.735 kb on + strand, within DDA3937_RS05985at 1348.736 kb on - strand, within DDA3937_RS05985at 1348.736 kb on - strand, within DDA3937_RS05985at 1348.736 kb on - strand, within DDA3937_RS05985at 1348.922 kb on + strand, within DDA3937_RS05985at 1348.922 kb on + strand, within DDA3937_RS05985at 1348.923 kb on - strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.027 kb on + strand, within DDA3937_RS05985at 1349.028 kb on - strand, within DDA3937_RS05985at 1349.028 kb on - strand, within DDA3937_RS05985at 1349.028 kb on - strand, within DDA3937_RS05985at 1349.028 kb on - strand, within DDA3937_RS05985at 1349.028 kb on - strand, within DDA3937_RS05985at 1349.028 kb on - strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.031 kb on + strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.032 kb on - strand, within DDA3937_RS05985at 1349.033 kb on + strand, within DDA3937_RS05985at 1349.033 kb on + strand, within DDA3937_RS05985at 1349.034 kb on - strand, within DDA3937_RS05985at 1349.034 kb on - strand, within DDA3937_RS05985at 1349.034 kb on - strand, within DDA3937_RS05985at 1349.034 kb on - strand, within DDA3937_RS05985at 1349.034 kb on - strand, within DDA3937_RS05985at 1349.034 kb on - strand, within DDA3937_RS05985at 1349.092 kb on - strand, within DDA3937_RS05985at 1349.213 kb on + strand, within DDA3937_RS05985at 1349.214 kb on - strand, within DDA3937_RS05985at 1349.214 kb on - strand, within DDA3937_RS05985at 1349.214 kb on - strand, within DDA3937_RS05985at 1349.307 kb on + strand, within DDA3937_RS05985at 1349.307 kb on + strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.308 kb on - strand, within DDA3937_RS05985at 1349.309 kb on + strand, within DDA3937_RS05985at 1349.310 kb on - strand, within DDA3937_RS05985at 1349.310 kb on - strand, within DDA3937_RS05985at 1349.310 kb on - strand, within DDA3937_RS05985at 1349.513 kb on + strandat 1349.514 kb on - strandat 1349.599 kb on - strandat 1349.602 kb on + strandat 1349.603 kb on - strandat 1349.666 kb on + strandat 1349.749 kb on + strand, within DDA3937_RS05990at 1349.750 kb on - strand, within DDA3937_RS05990at 1349.750 kb on - strand, within DDA3937_RS05990at 1349.750 kb on - strand, within DDA3937_RS05990at 1349.782 kb on + strand, within DDA3937_RS05990at 1349.782 kb on + strand, within DDA3937_RS05990at 1349.782 kb on + strand, within DDA3937_RS05990at 1349.783 kb on - strand, within DDA3937_RS05990at 1349.783 kb on - strand, within DDA3937_RS05990at 1349.783 kb on - strand, within DDA3937_RS05990at 1349.789 kb on - strand, within DDA3937_RS05990at 1349.789 kb on - strand, within DDA3937_RS05990at 1349.789 kb on - strand, within DDA3937_RS05990at 1349.789 kb on - strand, within DDA3937_RS05990at 1349.939 kb on + strand, within DDA3937_RS05990at 1349.940 kb on - strand, within DDA3937_RS05990at 1350.031 kb on + strand, within DDA3937_RS05990at 1350.032 kb on - strand, within DDA3937_RS05990at 1350.032 kb on - strand, within DDA3937_RS05990at 1350.040 kb on + strand, within DDA3937_RS05990at 1350.041 kb on - strand, within DDA3937_RS05990at 1350.041 kb on - strand, within DDA3937_RS05990at 1350.041 kb on - strand, within DDA3937_RS05990at 1350.041 kb on - strand, within DDA3937_RS05990at 1350.045 kb on + strand, within DDA3937_RS05990at 1350.046 kb on - strand, within DDA3937_RS05990at 1350.072 kb on - strand, within DDA3937_RS05990at 1350.112 kb on + strand, within DDA3937_RS05990at 1350.113 kb on - strand, within DDA3937_RS05990at 1350.116 kb on + strand, within DDA3937_RS05990at 1350.159 kb on + strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.160 kb on - strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.163 kb on + strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.164 kb on - strand, within DDA3937_RS05990at 1350.260 kb on + strandat 1350.261 kb on - strand, within DDA3937_RS05990at 1350.366 kb on - strand, within DDA3937_RS05990at 1350.598 kb on + strand, within DDA3937_RS05995at 1350.599 kb on - strand, within DDA3937_RS05995at 1350.599 kb on - strand, within DDA3937_RS05995at 1350.648 kb on + strand, within DDA3937_RS05995at 1350.648 kb on + strand, within DDA3937_RS05995at 1350.649 kb on - strand, within DDA3937_RS05995at 1350.824 kb on - strand, within DDA3937_RS05995at 1350.855 kb on + strand, within DDA3937_RS05995at 1350.938 kb on - strand, within DDA3937_RS05995at 1350.966 kb on + strand, within DDA3937_RS05995at 1350.966 kb on + strand, within DDA3937_RS05995at 1350.966 kb on + strandat 1350.967 kb on - strand, within DDA3937_RS05995at 1350.967 kb on - strand, within DDA3937_RS05995at 1350.967 kb on - strand, within DDA3937_RS05995at 1350.967 kb on - strand, within DDA3937_RS05995at 1350.967 kb on - strand, within DDA3937_RS05995at 1350.967 kb on - strand, within DDA3937_RS05995at 1351.152 kb on - strand, within DDA3937_RS05995at 1351.173 kb on + strand, within DDA3937_RS05995at 1351.174 kb on - strand, within DDA3937_RS05995at 1351.174 kb on - strand, within DDA3937_RS05995at 1351.177 kb on + strand, within DDA3937_RS05995at 1351.177 kb on + strand, within DDA3937_RS05995at 1351.330 kb on - strandat 1351.336 kb on + strandat 1351.402 kb on + strandat 1351.403 kb on - strandat 1351.403 kb on - strandat 1351.403 kb on - strandat 1351.407 kb on + strandat 1351.407 kb on + strandat 1351.407 kb on + strandat 1351.408 kb on - strandat 1351.408 kb on - strandat 1351.408 kb on - strandat 1351.409 kb on + strandat 1351.409 kb on + strandat 1351.410 kb on - strandat 1351.410 kb on - strandat 1351.410 kb on - strandat 1351.410 kb on - strandat 1351.433 kb on + strandat 1351.433 kb on + strandat 1351.434 kb on - strandat 1351.434 kb on - strandat 1351.468 kb on - strandat 1351.468 kb on - strandat 1351.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,348,685 + DDA3937_RS05985 0.31 -1.2
1,348,685 + DDA3937_RS05985 0.31 +0.9
1,348,685 + DDA3937_RS05985 0.31 +2.1
1,348,685 + DDA3937_RS05985 0.31 -1.6
1,348,686 - DDA3937_RS05985 0.31 -3.3
1,348,686 - DDA3937_RS05985 0.31 -1.7
1,348,735 + DDA3937_RS05985 0.35 -0.7
1,348,735 + DDA3937_RS05985 0.35 -2.0
1,348,736 - DDA3937_RS05985 0.35 -3.0
1,348,736 - DDA3937_RS05985 0.35 -0.9
1,348,736 - DDA3937_RS05985 0.35 -0.3
1,348,922 + DDA3937_RS05985 0.52 -1.2
1,348,922 + DDA3937_RS05985 0.52 -1.0
1,348,923 - DDA3937_RS05985 0.52 -3.9
1,349,027 + DDA3937_RS05985 0.62 +2.1
1,349,027 + DDA3937_RS05985 0.62 -1.2
1,349,027 + DDA3937_RS05985 0.62 -2.2
1,349,027 + DDA3937_RS05985 0.62 -0.2
1,349,027 + DDA3937_RS05985 0.62 +0.3
1,349,027 + DDA3937_RS05985 0.62 -0.4
1,349,027 + DDA3937_RS05985 0.62 -0.8
1,349,027 + DDA3937_RS05985 0.62 +0.0
1,349,028 - DDA3937_RS05985 0.62 -1.8
1,349,028 - DDA3937_RS05985 0.62 +0.3
1,349,028 - DDA3937_RS05985 0.62 -2.7
1,349,028 - DDA3937_RS05985 0.62 -0.8
1,349,028 - DDA3937_RS05985 0.62 +1.4
1,349,028 - DDA3937_RS05985 0.62 -0.6
1,349,031 + DDA3937_RS05985 0.62 +0.2
1,349,031 + DDA3937_RS05985 0.62 -3.2
1,349,031 + DDA3937_RS05985 0.62 +1.4
1,349,031 + DDA3937_RS05985 0.62 -0.5
1,349,031 + DDA3937_RS05985 0.62 -2.3
1,349,031 + DDA3937_RS05985 0.62 +0.2
1,349,031 + DDA3937_RS05985 0.62 -1.7
1,349,032 - DDA3937_RS05985 0.62 -2.0
1,349,032 - DDA3937_RS05985 0.62 +0.8
1,349,032 - DDA3937_RS05985 0.62 -1.7
1,349,032 - DDA3937_RS05985 0.62 -1.2
1,349,032 - DDA3937_RS05985 0.62 -0.2
1,349,032 - DDA3937_RS05985 0.62 -0.9
1,349,032 - DDA3937_RS05985 0.62 +0.4
1,349,032 - DDA3937_RS05985 0.62 -0.3
1,349,032 - DDA3937_RS05985 0.62 -0.7
1,349,033 + DDA3937_RS05985 0.62 -0.6
1,349,033 + DDA3937_RS05985 0.62 +0.3
1,349,034 - DDA3937_RS05985 0.62 +0.1
1,349,034 - DDA3937_RS05985 0.62 +1.4
1,349,034 - DDA3937_RS05985 0.62 -3.3
1,349,034 - DDA3937_RS05985 0.62 +1.4
1,349,034 - DDA3937_RS05985 0.62 -0.6
1,349,034 - DDA3937_RS05985 0.62 +1.3
1,349,092 - DDA3937_RS05985 0.68 -0.9
1,349,213 + DDA3937_RS05985 0.78 -2.9
1,349,214 - DDA3937_RS05985 0.79 -0.9
1,349,214 - DDA3937_RS05985 0.79 -1.1
1,349,214 - DDA3937_RS05985 0.79 -2.3
1,349,307 + DDA3937_RS05985 0.87 -2.0
1,349,307 + DDA3937_RS05985 0.87 +0.3
1,349,308 - DDA3937_RS05985 0.87 -1.4
1,349,308 - DDA3937_RS05985 0.87 -0.9
1,349,308 - DDA3937_RS05985 0.87 -1.5
1,349,308 - DDA3937_RS05985 0.87 -2.7
1,349,308 - DDA3937_RS05985 0.87 +1.2
1,349,308 - DDA3937_RS05985 0.87 -0.9
1,349,308 - DDA3937_RS05985 0.87 -0.5
1,349,309 + DDA3937_RS05985 0.87 -1.5
1,349,310 - DDA3937_RS05985 0.87 -0.4
1,349,310 - DDA3937_RS05985 0.87 +0.2
1,349,310 - DDA3937_RS05985 0.87 -0.9
1,349,513 + -1.2
1,349,514 - -0.2
1,349,599 - -0.3
1,349,602 + +0.4
1,349,603 - -0.0
1,349,666 + -1.4
1,349,749 + DDA3937_RS05990 0.11 +1.0
1,349,750 - DDA3937_RS05990 0.12 +0.1
1,349,750 - DDA3937_RS05990 0.12 -2.8
1,349,750 - DDA3937_RS05990 0.12 -1.4
1,349,782 + DDA3937_RS05990 0.15 -2.5
1,349,782 + DDA3937_RS05990 0.15 +0.4
1,349,782 + DDA3937_RS05990 0.15 -2.9
1,349,783 - DDA3937_RS05990 0.15 -0.6
1,349,783 - DDA3937_RS05990 0.15 -3.8
1,349,783 - DDA3937_RS05990 0.15 -4.1
1,349,789 - DDA3937_RS05990 0.16 -2.0
1,349,789 - DDA3937_RS05990 0.16 -1.4
1,349,789 - DDA3937_RS05990 0.16 -1.9
1,349,789 - DDA3937_RS05990 0.16 -0.5
1,349,939 + DDA3937_RS05990 0.34 -1.0
1,349,940 - DDA3937_RS05990 0.34 -2.8
1,350,031 + DDA3937_RS05990 0.45 +0.3
1,350,032 - DDA3937_RS05990 0.45 +1.6
1,350,032 - DDA3937_RS05990 0.45 -0.6
1,350,040 + DDA3937_RS05990 0.46 -2.8
1,350,041 - DDA3937_RS05990 0.46 +0.3
1,350,041 - DDA3937_RS05990 0.46 -2.2
1,350,041 - DDA3937_RS05990 0.46 -1.9
1,350,041 - DDA3937_RS05990 0.46 -3.5
1,350,045 + DDA3937_RS05990 0.46 -2.9
1,350,046 - DDA3937_RS05990 0.47 +0.5
1,350,072 - DDA3937_RS05990 0.50 -1.0
1,350,112 + DDA3937_RS05990 0.54 -0.6
1,350,113 - DDA3937_RS05990 0.54 -1.9
1,350,116 + DDA3937_RS05990 0.55 +0.7
1,350,159 + DDA3937_RS05990 0.60 -0.1
1,350,160 - DDA3937_RS05990 0.60 -2.5
1,350,160 - DDA3937_RS05990 0.60 +1.4
1,350,160 - DDA3937_RS05990 0.60 +3.2
1,350,160 - DDA3937_RS05990 0.60 -2.5
1,350,160 - DDA3937_RS05990 0.60 -1.6
1,350,160 - DDA3937_RS05990 0.60 +1.2
1,350,160 - DDA3937_RS05990 0.60 -0.6
1,350,160 - DDA3937_RS05990 0.60 +0.3
1,350,160 - DDA3937_RS05990 0.60 +0.4
1,350,160 - DDA3937_RS05990 0.60 -1.3
1,350,160 - DDA3937_RS05990 0.60 -1.4
1,350,163 + DDA3937_RS05990 0.60 +0.9
1,350,163 + DDA3937_RS05990 0.60 +0.8
1,350,163 + DDA3937_RS05990 0.60 +0.1
1,350,163 + DDA3937_RS05990 0.60 -1.4
1,350,163 + DDA3937_RS05990 0.60 -0.3
1,350,163 + DDA3937_RS05990 0.60 +0.1
1,350,163 + DDA3937_RS05990 0.60 -2.0
1,350,163 + DDA3937_RS05990 0.60 -0.6
1,350,163 + DDA3937_RS05990 0.60 +1.9
1,350,163 + DDA3937_RS05990 0.60 -0.2
1,350,164 - DDA3937_RS05990 0.61 -0.4
1,350,164 - DDA3937_RS05990 0.61 -3.0
1,350,164 - DDA3937_RS05990 0.61 +3.4
1,350,164 - DDA3937_RS05990 0.61 +0.1
1,350,164 - DDA3937_RS05990 0.61 -1.8
1,350,164 - DDA3937_RS05990 0.61 -2.2
1,350,164 - DDA3937_RS05990 0.61 -0.6
1,350,164 - DDA3937_RS05990 0.61 -1.0
1,350,164 - DDA3937_RS05990 0.61 -1.1
1,350,164 - DDA3937_RS05990 0.61 +2.0
1,350,164 - DDA3937_RS05990 0.61 -2.0
1,350,164 - DDA3937_RS05990 0.61 +1.1
1,350,164 - DDA3937_RS05990 0.61 +2.1
1,350,164 - DDA3937_RS05990 0.61 -0.4
1,350,164 - DDA3937_RS05990 0.61 +0.2
1,350,260 + -0.1
1,350,261 - DDA3937_RS05990 0.72 -0.1
1,350,366 - DDA3937_RS05990 0.84 +0.9
1,350,598 + DDA3937_RS05995 0.12 -2.2
1,350,599 - DDA3937_RS05995 0.12 -0.9
1,350,599 - DDA3937_RS05995 0.12 -1.6
1,350,648 + DDA3937_RS05995 0.18 -3.0
1,350,648 + DDA3937_RS05995 0.18 +2.5
1,350,649 - DDA3937_RS05995 0.18 -0.9
1,350,824 - DDA3937_RS05995 0.40 -2.1
1,350,855 + DDA3937_RS05995 0.44 -0.4
1,350,938 - DDA3937_RS05995 0.54 -0.6
1,350,966 + DDA3937_RS05995 0.57 -2.2
1,350,966 + DDA3937_RS05995 0.57 +0.8
1,350,966 + +0.4
1,350,967 - DDA3937_RS05995 0.57 -0.2
1,350,967 - DDA3937_RS05995 0.57 +0.3
1,350,967 - DDA3937_RS05995 0.57 -1.3
1,350,967 - DDA3937_RS05995 0.57 -1.3
1,350,967 - DDA3937_RS05995 0.57 -1.1
1,350,967 - DDA3937_RS05995 0.57 +1.2
1,351,152 - DDA3937_RS05995 0.80 -3.7
1,351,173 + DDA3937_RS05995 0.82 -1.4
1,351,174 - DDA3937_RS05995 0.82 +0.9
1,351,174 - DDA3937_RS05995 0.82 -0.1
1,351,177 + DDA3937_RS05995 0.83 -1.9
1,351,177 + DDA3937_RS05995 0.83 -0.6
1,351,330 - +2.6
1,351,336 + -0.6
1,351,402 + -0.1
1,351,403 - -0.9
1,351,403 - +1.6
1,351,403 - -0.9
1,351,407 + -0.2
1,351,407 + -1.7
1,351,407 + -0.6
1,351,408 - +2.6
1,351,408 - -1.4
1,351,408 - -2.0
1,351,409 + -2.3
1,351,409 + -0.6
1,351,410 - +0.4
1,351,410 - -2.6
1,351,410 - -1.4
1,351,410 - -0.3
1,351,433 + +0.3
1,351,433 + -2.6
1,351,434 - -0.4
1,351,434 - +0.2
1,351,468 - -2.6
1,351,468 - -2.9
1,351,493 - +1.4

Or see this region's nucleotide sequence