Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05975

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,344,624	-		DDA3937_RS05970	0.70	-0.6
1,344,624	-		DDA3937_RS05970	0.70	-1.9
1,344,667	+		DDA3937_RS05970	0.71	-2.7
1,344,667	+		DDA3937_RS05970	0.71	-2.2
1,344,668	-		DDA3937_RS05970	0.71	+0.6
1,344,674	-		DDA3937_RS05970	0.72	-3.2
1,344,738	-		DDA3937_RS05970	0.74	-0.6
1,344,836	+		DDA3937_RS05970	0.78	+1.6
1,344,837	-				+0.4
1,345,299	+				-0.9
1,345,381	+				+0.6
1,345,382	-				-3.7
1,345,422	+				-3.0
1,345,423	-				+1.3
1,345,426	-				-0.6
1,345,482	+				-0.5
1,345,482	+				-0.7
1,345,483	-				-0.2
1,345,483	-		DDA3937_RS05975	0.10	+1.1
1,345,483	-		DDA3937_RS05975	0.10	-0.1
1,345,498	+				+1.4
1,345,498	+		DDA3937_RS05975	0.13	-2.8
1,345,498	+		DDA3937_RS05975	0.13	+0.6
1,345,499	-		DDA3937_RS05975	0.13	+0.1
1,345,584	+		DDA3937_RS05975	0.27	-1.2
1,345,584	+		DDA3937_RS05975	0.27	-0.9
1,345,584	+		DDA3937_RS05975	0.27	-0.6
1,345,584	+		DDA3937_RS05975	0.27	-2.6
1,345,585	-		DDA3937_RS05975	0.28	+0.4
1,345,585	-		DDA3937_RS05975	0.28	-2.4
1,345,585	-		DDA3937_RS05975	0.28	-2.5
1,345,585	-		DDA3937_RS05975	0.28	-0.9
1,345,585	-		DDA3937_RS05975	0.28	-1.4
1,345,585	-		DDA3937_RS05975	0.28	+2.9
1,345,626	+		DDA3937_RS05975	0.35	+1.0
1,345,627	-		DDA3937_RS05975	0.35	+0.4
1,345,635	+		DDA3937_RS05975	0.36	+0.0
1,345,635	+		DDA3937_RS05975	0.36	+0.8
1,345,635	+		DDA3937_RS05975	0.36	+0.3
1,345,635	+		DDA3937_RS05975	0.36	-0.9
1,345,692	+		DDA3937_RS05975	0.46	-0.3
1,345,723	+		DDA3937_RS05975	0.51	-1.2
1,345,723	+		DDA3937_RS05975	0.51	+0.1
1,345,724	-		DDA3937_RS05975	0.52	-1.6
1,345,772	+		DDA3937_RS05975	0.60	-0.3
1,345,772	+		DDA3937_RS05975	0.60	-0.9
1,345,773	-		DDA3937_RS05975	0.60	-0.4
1,345,773	-		DDA3937_RS05975	0.60	+1.2
1,345,773	-		DDA3937_RS05975	0.60	+1.1
1,345,807	+		DDA3937_RS05975	0.66	-1.2
1,345,834	+		DDA3937_RS05975	0.70	-1.2
1,345,835	-		DDA3937_RS05975	0.71	+0.1
1,345,835	-		DDA3937_RS05975	0.71	+1.4
1,345,835	-		DDA3937_RS05975	0.71	-0.9
1,345,835	-		DDA3937_RS05975	0.71	+1.4
1,345,845	+		DDA3937_RS05975	0.72	-1.7
1,345,846	-		DDA3937_RS05975	0.73	-0.5
1,345,846	-		DDA3937_RS05975	0.73	+0.4
1,345,875	+		DDA3937_RS05975	0.77	-2.7
1,345,875	+		DDA3937_RS05975	0.77	+0.8
1,345,875	+		DDA3937_RS05975	0.77	-0.4
1,345,875	+		DDA3937_RS05975	0.77	+0.4
1,345,876	-		DDA3937_RS05975	0.78	-0.1
1,346,005	+				+0.5
1,346,006	-				-2.6
1,346,006	-				-2.2
1,346,006	-				-2.0
1,346,010	+				-0.2
1,346,011	-				-1.0
1,346,011	-				-3.0
1,346,026	+				-2.2
1,346,029	+				-0.9
1,346,029	+				-0.2
1,346,029	+				-1.3
1,346,029	+				-2.8
1,346,029	+				-1.9
1,346,030	-				+1.3
1,346,183	-				-2.7
1,346,183	-				+0.5
1,346,236	+				+2.0
1,346,236	+				+0.6
1,346,236	+				-0.6
1,346,236	+				+1.4
1,346,236	+				-0.6
1,346,237	-				-1.9
1,346,237	-				+0.8
1,346,237	-				-1.9
1,346,237	-				-0.3
1,346,260	+				-0.1
1,346,260	+				-1.9
1,346,261	-				+2.8
1,346,261	-				-0.9
1,346,263	+				-0.6
1,346,263	+				-0.2
1,346,264	-				+0.2
1,346,312	-				-0.2
1,346,312	-				+1.2
1,346,312	-				-2.2
1,346,325	+				-3.4
1,346,330	+				-0.9
1,346,331	-				-1.1
1,346,332	+				-2.2
1,346,333	-				+2.0
1,346,333	-				-0.2
1,346,339	+				-2.3
1,346,359	+				+1.4
1,346,411	-		DDA3937_RS05980	0.11	-2.4
1,346,622	+		DDA3937_RS05980	0.20	-1.4
1,346,622	+		DDA3937_RS05980	0.20	-2.3
1,346,747	+		DDA3937_RS05980	0.26	-1.7
1,346,747	+		DDA3937_RS05980	0.26	+0.9
1,346,747	+		DDA3937_RS05980	0.26	-0.2
1,346,747	+		DDA3937_RS05980	0.26	+0.5
1,346,747	+		DDA3937_RS05980	0.26	-0.7
1,346,748	-		DDA3937_RS05980	0.26	-0.4
1,346,748	-		DDA3937_RS05980	0.26	-2.6
1,346,748	-		DDA3937_RS05980	0.26	+0.1
1,346,748	-		DDA3937_RS05980	0.26	+1.3
1,346,782	+		DDA3937_RS05980	0.28	-1.2
1,346,782	+		DDA3937_RS05980	0.28	+0.4
1,346,783	-		DDA3937_RS05980	0.28	+0.6
1,346,826	-		DDA3937_RS05980	0.30	+1.1
1,346,840	+		DDA3937_RS05980	0.30	+0.7
1,346,840	+		DDA3937_RS05980	0.30	-2.7
1,346,841	-		DDA3937_RS05980	0.30	+1.3
1,346,841	-		DDA3937_RS05980	0.30	+2.2
1,346,841	-		DDA3937_RS05980	0.30	+0.9
1,346,846	+		DDA3937_RS05980	0.31	-0.9
1,346,846	+		DDA3937_RS05980	0.31	-2.4
1,346,847	-		DDA3937_RS05980	0.31	+0.4
1,346,859	-		DDA3937_RS05980	0.31	-1.8
1,346,860	+		DDA3937_RS05980	0.31	-2.1
1,346,860	+		DDA3937_RS05980	0.31	+0.4
1,346,860	+		DDA3937_RS05980	0.31	-1.3
1,346,860	+		DDA3937_RS05980	0.31	+1.0
1,346,861	-		DDA3937_RS05980	0.31	+0.8
1,346,861	-		DDA3937_RS05980	0.31	-1.7
1,346,869	+		DDA3937_RS05980	0.32	-1.3
1,346,869	+		DDA3937_RS05980	0.32	-0.9
1,346,870	-		DDA3937_RS05980	0.32	+1.4
1,346,870	-		DDA3937_RS05980	0.32	-1.9
1,346,896	+		DDA3937_RS05980	0.33	+0.4
1,346,896	+		DDA3937_RS05980	0.33	+0.7
1,346,896	+		DDA3937_RS05980	0.33	-0.0
1,346,897	-		DDA3937_RS05980	0.33	-1.9
1,346,943	-		DDA3937_RS05980	0.35	-0.2
1,346,992	+		DDA3937_RS05980	0.37	-2.3
1,346,993	-		DDA3937_RS05980	0.37	+1.5