Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05715

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,276,265	-		DDA3937_RS05705	0.81	-1.4
1,276,265	-		DDA3937_RS05705	0.81	-0.1
1,276,331	+		DDA3937_RS05705	0.88	-1.1
1,276,332	-		DDA3937_RS05705	0.88	-3.5
1,276,332	-		DDA3937_RS05705	0.88	-1.4
1,276,341	-		DDA3937_RS05705	0.89	-0.9
1,276,432	+				-2.3
1,276,433	-				-1.1
1,276,433	-				-0.9
1,276,433	-				+2.3
1,276,433	-				+1.4
1,276,459	+				-0.1
1,276,520	-				-2.0
1,276,520	-				+0.9
1,276,541	+				-3.1
1,276,557	+				-0.3
1,276,557	+				+0.4
1,276,558	-				+0.4
1,276,558	-				-0.2
1,276,558	-				+1.9
1,276,561	+				-0.7
1,276,561	+				-2.3
1,276,562	-				-0.6
1,276,562	-				-0.6
1,276,562	-				-1.7
1,276,579	+				+0.0
1,276,579	+				+1.2
1,276,579	+				-1.4
1,276,580	-				+0.1
1,276,580	-				-0.1
1,276,580	-				-2.4
1,276,587	-				-1.6
1,276,602	+				+1.1
1,276,602	+				+1.2
1,276,603	-				-1.9
1,276,603	-				+0.4
1,276,603	-				-1.7
1,276,648	+				-2.3
1,276,648	+				+0.4
1,276,648	+				-0.1
1,276,652	+				+0.1
1,276,652	+				-0.5
1,276,653	-				+0.1
1,276,653	-				-2.6
1,276,662	+				-0.8
1,276,662	+				-1.3
1,276,662	+				-2.1
1,276,662	+				+0.3
1,276,662	+				+0.3
1,276,662	+				-0.6
1,276,662	+				-1.8
1,276,662	+				-3.4
1,276,662	+				+0.7
1,276,662	+				-1.6
1,276,663	-				-1.1
1,276,663	-				-1.4
1,276,663	-				+1.0
1,276,663	-				+1.3
1,276,663	-				-0.5
1,276,666	+				-2.0
1,276,666	+				-0.6
1,276,666	+				+1.6
1,276,667	-				+0.1
1,276,667	-				-3.0
1,276,667	-				-0.4
1,276,675	-				+1.0
1,276,681	+				+2.8
1,276,681	+				-1.5
1,276,681	+				-2.3
1,276,681	+				+0.4
1,276,682	-				+1.6
1,276,682	-				-0.1
1,276,682	-				-1.4
1,276,682	-				+0.1
1,276,694	-				-0.1
1,276,832	-		DDA3937_RS05710	0.30	+1.9
1,276,905	+		DDA3937_RS05710	0.43	-0.6
1,276,905	+		DDA3937_RS05710	0.43	+1.0
1,276,906	-		DDA3937_RS05710	0.43	-1.6
1,276,979	+		DDA3937_RS05710	0.56	-0.6
1,276,979	+		DDA3937_RS05710	0.56	-0.1
1,276,980	-		DDA3937_RS05710	0.56	-2.1
1,276,980	-		DDA3937_RS05710	0.56	-0.4
1,276,980	-		DDA3937_RS05710	0.56	-1.4
1,276,982	-		DDA3937_RS05710	0.56	+0.7
1,277,219	+				-1.8
1,277,219	+				-0.4
1,277,219	+				-1.7
1,277,219	+				-2.4
1,277,219	+				-1.6
1,277,219	+				-1.4
1,277,220	-				-3.4
1,277,220	-				+0.9
1,277,220	-				-0.9
1,277,222	+				-2.0
1,277,222	+				-2.1
1,277,222	+				+2.0
1,277,222	+				-1.6
1,277,222	+				+0.4
1,277,222	+				-1.0
1,277,222	+				-0.6
1,277,222	+				+0.1
1,277,222	+				-1.6
1,277,223	-				+0.7
1,277,223	-				+0.3
1,277,223	-				-1.0
1,277,223	-				-2.4
1,277,256	+				-0.5
1,277,256	+				-3.1
1,277,256	+				-1.3
1,277,257	-				+0.4
1,277,257	-				-0.8
1,277,261	+				-1.2
1,277,261	+				+0.4
1,277,261	+				-1.7
1,277,262	-				-1.3
1,277,262	-				-1.1
1,277,262	-				-3.1
1,277,274	+				-0.8
1,277,447	+		DDA3937_RS05715	0.58	+0.1
1,277,448	-		DDA3937_RS05715	0.58	-1.7
1,277,448	-		DDA3937_RS05715	0.58	-0.6
1,277,448	-		DDA3937_RS05715	0.58	+0.4
1,277,448	-		DDA3937_RS05715	0.58	-1.1
1,277,449	+		DDA3937_RS05715	0.59	+0.5
1,277,449	+		DDA3937_RS05715	0.59	-0.7
1,277,449	+		DDA3937_RS05715	0.59	-2.1
1,277,449	+		DDA3937_RS05715	0.59	-2.4
1,277,450	-		DDA3937_RS05715	0.59	-3.3
1,277,450	-		DDA3937_RS05715	0.59	+0.5
1,277,450	-		DDA3937_RS05715	0.59	-3.2
1,277,450	-		DDA3937_RS05715	0.59	-3.5
1,277,450	-		DDA3937_RS05715	0.59	-0.1
1,277,456	+		DDA3937_RS05715	0.61	-2.1
1,277,456	+		DDA3937_RS05715	0.61	-1.4
1,277,456	+		DDA3937_RS05715	0.61	-2.1
1,277,457	-		DDA3937_RS05715	0.61	+0.4
1,277,505	+		DDA3937_RS05715	0.76	+0.7
1,277,505	+		DDA3937_RS05715	0.76	+1.3
1,277,509	+		DDA3937_RS05715	0.77	+0.2
1,277,509	+		DDA3937_RS05715	0.77	+0.4
1,277,509	+		DDA3937_RS05715	0.77	-1.1
1,277,509	+		DDA3937_RS05715	0.77	-1.4
1,277,509	+		DDA3937_RS05715	0.77	-0.9
1,277,509	+		DDA3937_RS05715	0.77	-1.9
1,277,517	+		DDA3937_RS05715	0.79	-1.0
1,277,517	+		DDA3937_RS05715	0.79	-0.8
1,277,518	-		DDA3937_RS05715	0.80	+1.3
1,277,540	-		DDA3937_RS05715	0.86	-1.9
1,277,597	+				+1.8
1,277,597	+				+1.1
1,277,597	+				-0.1
1,277,598	-				-2.4
1,277,636	+				-1.2
1,277,636	+				+0.9
1,277,637	-				-2.0
1,277,637	-				-2.0
1,277,860	+				-2.1
1,277,860	+				-1.7
1,277,860	+				-2.5
1,277,861	-				-2.3
1,277,880	-				-2.2
1,277,890	+				-2.6
1,277,890	+				+1.1
1,277,890	+				-2.7
1,277,890	+				-3.0
1,277,891	-				-2.4
1,277,891	-				-1.0
1,277,911	+				-3.1
1,277,912	-				+1.6
1,277,925	-				-0.4
1,277,964	+				+2.0
1,277,983	+				-1.9
1,277,984	-				-2.5
1,278,022	+				-2.3
1,278,022	+				-2.9
1,278,047	-				-1.4
1,278,061	-				-1.3
1,278,119	-				+1.1
1,278,122	+				-0.1
1,278,122	+				-2.9
1,278,313	-		DDA3937_RS05720	0.84	-1.4
1,278,346	-				-0.4
1,278,401	-				+2.0
1,278,515	+		DDA3937_RS05725	0.31	-2.9
1,278,518	-		DDA3937_RS05725	0.32	+0.4
1,278,518	-		DDA3937_RS05725	0.32	-0.5
1,278,584	-		DDA3937_RS05725	0.50	+1.4
1,278,584	-		DDA3937_RS05725	0.50	-0.9