Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05620

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,253,844	-		DDA3937_RS05615	0.48	+1.1
1,254,159	-		DDA3937_RS05615	0.81	+1.5
1,254,353	+				-0.1
1,254,364	+				-0.5
1,254,479	-				-2.1
1,254,533	-				-1.4
1,254,554	-				-3.0
1,254,560	-				+0.8
1,254,569	+				+0.6
1,254,573	-				-2.6
1,254,589	-				+2.9
1,254,591	+				-1.9
1,254,591	+				-0.5
1,254,592	-				+2.0
1,254,592	-				+1.6
1,254,603	-				-2.6
1,254,604	+				-1.6
1,254,615	+				-2.5
1,254,616	-				-2.0
1,254,620	-				-1.3
1,254,655	+				-2.0
1,254,655	+				-2.2
1,254,656	-				+0.5
1,254,666	-				-1.7
1,254,696	+				-1.2
1,254,696	+				+0.7
1,254,711	-				+0.5
1,254,711	-				-1.1
1,254,711	-				-3.7
1,254,711	-				+0.1
1,254,711	-				-0.7
1,254,715	-				-2.0
1,254,715	-				-2.1
1,254,750	-				+1.2
1,254,757	+				-2.8
1,254,773	-				+0.6
1,254,819	+				-0.5
1,254,819	+				-0.9
1,254,819	+				-1.5
1,254,819	+				-0.8
1,254,819	+				-2.8
1,254,820	-				+0.3
1,254,820	-				+1.2
1,254,820	-				+0.7
1,254,823	+				-0.5
1,254,824	-				-2.1
1,254,824	-				+0.6
1,254,824	-				+0.3
1,254,865	-				-2.5
1,254,997	+		DDA3937_RS05620	0.13	+0.0
1,255,117	+		DDA3937_RS05620	0.21	-3.0
1,255,117	+		DDA3937_RS05620	0.21	-4.1
1,255,117	+		DDA3937_RS05620	0.21	-3.1
1,255,135	+		DDA3937_RS05620	0.23	-0.2
1,255,135	+		DDA3937_RS05620	0.23	+0.3
1,255,135	+		DDA3937_RS05620	0.23	-2.0
1,255,136	-		DDA3937_RS05620	0.23	-1.4
1,255,136	-		DDA3937_RS05620	0.23	-2.5
1,255,136	-		DDA3937_RS05620	0.23	-4.5
1,255,136	-		DDA3937_RS05620	0.23	-0.3
1,255,171	+		DDA3937_RS05620	0.25	-0.1
1,255,172	-		DDA3937_RS05620	0.25	+0.7
1,255,324	-		DDA3937_RS05620	0.36	-2.0
1,255,440	+		DDA3937_RS05620	0.43	+0.9
1,255,441	-		DDA3937_RS05620	0.44	-0.5
1,255,506	-		DDA3937_RS05620	0.48	+0.3
1,255,535	+		DDA3937_RS05620	0.50	-1.9
1,255,536	-		DDA3937_RS05620	0.50	-0.5
1,255,536	-		DDA3937_RS05620	0.50	+0.8
1,255,570	+		DDA3937_RS05620	0.52	-1.1
1,255,709	+		DDA3937_RS05620	0.62	-1.3
1,255,709	+		DDA3937_RS05620	0.62	-1.5
1,255,710	-		DDA3937_RS05620	0.62	+0.1
1,255,716	+		DDA3937_RS05620	0.62	-2.8
1,255,741	+		DDA3937_RS05620	0.64	-1.8
1,255,742	-		DDA3937_RS05620	0.64	+2.5
1,255,879	+		DDA3937_RS05620	0.73	-3.5
1,255,880	-		DDA3937_RS05620	0.73	+2.1
1,255,880	-		DDA3937_RS05620	0.73	-0.9
1,255,950	+		DDA3937_RS05620	0.78	-3.7
1,255,951	-		DDA3937_RS05620	0.78	+1.1
1,255,951	-		DDA3937_RS05620	0.78	-2.6
1,255,951	-		DDA3937_RS05620	0.78	+1.4
1,255,951	-		DDA3937_RS05620	0.78	+1.4
1,256,057	-		DDA3937_RS05620	0.85	-1.2
1,256,095	+		DDA3937_RS05620	0.88	-1.4
1,256,096	-		DDA3937_RS05620	0.88	-2.6
1,256,096	-		DDA3937_RS05620	0.88	-2.8
1,256,096	-		DDA3937_RS05620	0.88	-2.1
1,256,096	-		DDA3937_RS05620	0.88	-1.6
1,256,096	-		DDA3937_RS05620	0.88	-0.1
1,256,294	+				+0.4
1,256,439	-		DDA3937_RS05625	0.20	+0.4
1,256,451	+		DDA3937_RS05625	0.22	-1.0
1,256,451	+		DDA3937_RS05625	0.22	-0.9
1,256,451	+		DDA3937_RS05625	0.22	-0.6
1,256,451	+		DDA3937_RS05625	0.22	-3.8
1,256,451	+		DDA3937_RS05625	0.22	-0.3
1,256,451	+		DDA3937_RS05625	0.22	-0.4
1,256,451	+		DDA3937_RS05625	0.22	+1.7
1,256,451	+		DDA3937_RS05625	0.22	+0.5
1,256,452	-		DDA3937_RS05625	0.22	-0.1
1,256,452	-		DDA3937_RS05625	0.22	+1.0
1,256,452	-		DDA3937_RS05625	0.22	-1.0
1,256,452	-		DDA3937_RS05625	0.22	-0.1
1,256,452	-		DDA3937_RS05625	0.22	+1.4
1,256,452	-		DDA3937_RS05625	0.22	-1.2
1,256,452	-		DDA3937_RS05625	0.22	+0.9
1,256,452	-		DDA3937_RS05625	0.22	-0.9
1,256,452	-		DDA3937_RS05625	0.22	-2.6
1,256,452	-		DDA3937_RS05625	0.22	+1.2
1,256,452	-		DDA3937_RS05625	0.22	-2.0
1,256,456	+		DDA3937_RS05625	0.23	-0.1
1,256,456	+		DDA3937_RS05625	0.23	-0.6
1,256,457	-				-0.9
1,256,457	-		DDA3937_RS05625	0.23	-0.2
1,256,457	-		DDA3937_RS05625	0.23	-2.6
1,256,457	-		DDA3937_RS05625	0.23	-0.1
1,256,458	+		DDA3937_RS05625	0.23	+0.8
1,256,458	+		DDA3937_RS05625	0.23	-1.1
1,256,458	+		DDA3937_RS05625	0.23	+0.2
1,256,459	-		DDA3937_RS05625	0.23	-1.6
1,256,459	-		DDA3937_RS05625	0.23	-0.4
1,256,459	-		DDA3937_RS05625	0.23	-2.1
1,256,459	-		DDA3937_RS05625	0.23	-2.0
1,256,486	+		DDA3937_RS05625	0.28	-1.2
1,256,486	+		DDA3937_RS05625	0.28	+3.4
1,256,486	+		DDA3937_RS05625	0.28	+0.1
1,256,487	-		DDA3937_RS05625	0.28	-1.0
1,256,487	-		DDA3937_RS05625	0.28	+2.2
1,256,520	-		DDA3937_RS05625	0.34	+0.3
1,256,543	-		DDA3937_RS05625	0.38	-0.1
1,256,579	+		DDA3937_RS05625	0.44	-0.1
1,256,579	+		DDA3937_RS05625	0.44	-0.9
1,256,583	-		DDA3937_RS05625	0.45	-2.5
1,256,583	-		DDA3937_RS05625	0.45	-1.9
1,256,626	+		DDA3937_RS05625	0.52	+0.1
1,256,626	+		DDA3937_RS05625	0.52	-2.0
1,256,627	-		DDA3937_RS05625	0.52	-2.5
1,256,627	-		DDA3937_RS05625	0.52	-2.0
1,256,656	-		DDA3937_RS05625	0.57	+0.4
1,256,656	-		DDA3937_RS05625	0.57	-0.6
1,256,768	+		DDA3937_RS05625	0.77	-1.6
1,256,768	+		DDA3937_RS05625	0.77	-1.0
1,256,769	-		DDA3937_RS05625	0.77	-2.1
1,256,937	-				+1.4
1,256,939	+				-0.1
1,256,940	-				+0.3
1,256,940	-				+0.0
1,256,940	-				+3.3
1,256,945	+				-1.6
1,256,945	+				-2.4
1,256,945	+				+1.4
1,256,945	+				-3.0
1,256,945	+				+0.9
1,256,946	-				+1.5
1,256,946	-				+1.0
1,256,946	-				-0.3
1,256,958	+				-1.1
1,256,958	+				+1.0
1,256,958	+				+2.7
1,256,958	+				+2.6
1,256,958	+				+2.1
1,256,958	+				+0.3
1,256,959	-				-0.1
1,256,959	-				-1.0
1,257,000	-				+1.8
1,257,005	+				+1.4
1,257,006	-				+0.6
1,257,006	-				+1.9
1,257,006	-				-1.1
1,257,101	+				-1.1
1,257,127	-				+1.1
1,257,224	-				+0.1
1,257,229	+				-1.9
1,257,230	-				-0.1
1,257,247	-				-1.4