Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04660

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,027,139	+		DDA3937_RS04650	0.82	-0.6
1,027,139	+		DDA3937_RS04650	0.82	+1.0
1,027,139	+		DDA3937_RS04650	0.82	-0.2
1,027,140	-		DDA3937_RS04650	0.82	-2.0
1,027,140	-		DDA3937_RS04650	0.82	+0.3
1,027,140	-		DDA3937_RS04650	0.82	-4.1
1,027,160	-		DDA3937_RS04650	0.84	-1.9
1,027,163	+		DDA3937_RS04650	0.84	-0.1
1,027,164	-		DDA3937_RS04650	0.84	-2.2
1,027,172	+		DDA3937_RS04650	0.85	+0.4
1,027,172	+		DDA3937_RS04650	0.85	-0.9
1,027,291	+				+1.4
1,027,374	-				-0.7
1,027,375	+		DDA3937_RS04655	0.10	-1.6
1,027,375	+		DDA3937_RS04655	0.10	-3.1
1,027,376	-		DDA3937_RS04655	0.10	-2.1
1,027,376	-		DDA3937_RS04655	0.10	-3.0
1,027,376	-		DDA3937_RS04655	0.10	-0.9
1,027,411	+		DDA3937_RS04655	0.14	-1.8
1,027,525	+				+0.4
1,027,525	+		DDA3937_RS04655	0.28	-0.4
1,027,558	+		DDA3937_RS04655	0.32	-0.7
1,027,558	+		DDA3937_RS04655	0.32	-2.1
1,027,559	-		DDA3937_RS04655	0.32	-2.6
1,027,559	-		DDA3937_RS04655	0.32	-1.3
1,027,559	-		DDA3937_RS04655	0.32	+0.0
1,027,559	-		DDA3937_RS04655	0.32	-2.0
1,027,562	+		DDA3937_RS04655	0.32	-1.2
1,027,645	+		DDA3937_RS04655	0.42	-3.1
1,027,646	-		DDA3937_RS04655	0.42	-0.6
1,027,747	+		DDA3937_RS04655	0.54	-1.4
1,027,802	+		DDA3937_RS04655	0.61	-2.5
1,027,802	+		DDA3937_RS04655	0.61	-1.1
1,027,802	+		DDA3937_RS04655	0.61	-0.9
1,027,803	-		DDA3937_RS04655	0.61	+0.3
1,027,803	-		DDA3937_RS04655	0.61	-2.8
1,027,850	+		DDA3937_RS04655	0.66	-3.5
1,027,851	-		DDA3937_RS04655	0.67	-1.1
1,027,855	+		DDA3937_RS04655	0.67	-1.9
1,027,856	-		DDA3937_RS04655	0.67	-2.0
1,027,856	-		DDA3937_RS04655	0.67	-1.4
1,028,068	+				-2.0
1,028,068	+				+2.4
1,028,069	-				-2.0
1,028,069	-				-1.9
1,028,123	+				-1.1
1,028,123	+				+0.4
1,028,126	+				-0.7
1,028,126	+				-1.4
1,028,126	+				-1.7
1,028,126	+				-0.1
1,028,126	+				-0.5
1,028,126	+				-0.0
1,028,126	+				-0.1
1,028,127	-				-1.9
1,028,127	-				-1.9
1,028,127	-				-0.4
1,028,127	-				-1.4
1,028,127	-				-2.7
1,028,127	-				-2.8
1,028,127	-				-0.1
1,028,127	-				-0.9
1,028,132	+				-0.4
1,028,172	+				+0.0
1,028,172	+				-1.2
1,028,173	-				-1.2
1,028,199	+				-1.6
1,028,199	+				-2.2
1,028,199	+				-0.6
1,028,199	+				+0.4
1,028,199	+				+0.7
1,028,200	-				-0.8
1,028,200	-				-1.1
1,028,226	+		DDA3937_RS04660	0.10	-2.2
1,028,226	+		DDA3937_RS04660	0.10	+0.3
1,028,290	+		DDA3937_RS04660	0.17	+0.2
1,028,290	+		DDA3937_RS04660	0.17	-2.7
1,028,290	+		DDA3937_RS04660	0.17	-0.6
1,028,290	+		DDA3937_RS04660	0.17	+0.4
1,028,291	-		DDA3937_RS04660	0.17	+1.0
1,028,292	+		DDA3937_RS04660	0.18	+1.3
1,028,293	-		DDA3937_RS04660	0.18	-3.1
1,028,437	-		DDA3937_RS04660	0.34	+0.9
1,028,437	-		DDA3937_RS04660	0.34	-1.4
1,028,489	-		DDA3937_RS04660	0.40	-0.2
1,028,490	+		DDA3937_RS04660	0.40	-0.2
1,028,490	+		DDA3937_RS04660	0.40	-1.7
1,028,490	+		DDA3937_RS04660	0.40	+0.8
1,028,491	-		DDA3937_RS04660	0.40	-1.9
1,028,491	-		DDA3937_RS04660	0.40	+0.5
1,028,491	-		DDA3937_RS04660	0.40	+0.9
1,028,491	-		DDA3937_RS04660	0.40	-1.0
1,028,491	-		DDA3937_RS04660	0.40	-1.2
1,028,491	-		DDA3937_RS04660	0.40	-1.2
1,028,491	-		DDA3937_RS04660	0.40	+1.2
1,028,502	+		DDA3937_RS04660	0.42	+1.3
1,028,502	+		DDA3937_RS04660	0.42	+0.3
1,028,503	-		DDA3937_RS04660	0.42	-0.2
1,028,698	+		DDA3937_RS04660	0.64	+0.2
1,028,698	+		DDA3937_RS04660	0.64	-2.3
1,028,737	-				-0.2
1,028,758	+		DDA3937_RS04660	0.71	-2.1
1,028,759	-		DDA3937_RS04660	0.71	-0.2
1,028,769	+		DDA3937_RS04660	0.72	+0.6
1,028,769	+		DDA3937_RS04660	0.72	+1.8
1,028,769	+		DDA3937_RS04660	0.72	-1.6
1,028,769	+		DDA3937_RS04660	0.72	-2.2
1,028,770	-		DDA3937_RS04660	0.72	-2.4
1,028,770	-		DDA3937_RS04660	0.72	-0.5
1,028,770	-		DDA3937_RS04660	0.72	-0.9
1,028,770	-		DDA3937_RS04660	0.72	-0.9
1,028,770	-		DDA3937_RS04660	0.72	+0.9
1,028,809	-		DDA3937_RS04660	0.77	+2.2
1,028,873	+		DDA3937_RS04660	0.84	-1.9
1,028,951	-				-3.1
1,029,015	+				-1.5
1,029,015	+				+1.9
1,029,015	+				-2.0
1,029,015	+				-2.0
1,029,015	+				-0.6
1,029,015	+				-0.6
1,029,015	+				-2.2
1,029,015	+				-0.3
1,029,015	+				+0.8
1,029,015	+				-0.9
1,029,015	+				-0.3
1,029,015	+				-0.6
1,029,016	-				+2.6
1,029,016	-				-0.9
1,029,016	-				-0.1
1,029,016	-				+0.2
1,029,016	-				-2.2
1,029,016	-				-1.6
1,029,016	-				-1.4
1,029,016	-				-1.7
1,029,017	+				+1.0
1,029,029	+				-2.8
1,029,029	+				-2.5
1,029,029	+				+0.0
1,029,034	+				+0.2
1,029,034	+				+3.9
1,029,034	+				+0.6
1,029,034	+				+1.6
1,029,034	+				+0.6
1,029,034	+				+0.6
1,029,034	+				+1.0
1,029,034	+				-0.3
1,029,035	-				-0.5
1,029,035	-				-0.2
1,029,035	-				+3.0
1,029,035	-				-1.5
1,029,035	-				-2.3
1,029,035	-				-0.9
1,029,035	-				-0.7
1,029,035	-				+1.1
1,029,035	-				-0.4
1,029,035	-				+0.2
1,029,035	-				-0.0
1,029,035	-				-0.5
1,029,036	+				-2.7
1,029,036	+				-1.0
1,029,036	+				+1.1
1,029,037	-				-1.2
1,029,192	+		DDA3937_RS04665	0.29	-1.6
1,029,225	-		DDA3937_RS04665	0.34	-0.6
1,029,258	+		DDA3937_RS04665	0.40	-3.1
1,029,258	+		DDA3937_RS04665	0.40	-1.4
1,029,259	-		DDA3937_RS04665	0.40	-1.4
1,029,282	-		DDA3937_RS04665	0.44	+0.4
1,029,355	+		DDA3937_RS04665	0.55	+0.4
1,029,376	+		DDA3937_RS04665	0.59	-0.9
1,029,376	+		DDA3937_RS04665	0.59	-2.5
1,029,376	+		DDA3937_RS04665	0.59	+0.8
1,029,377	-		DDA3937_RS04665	0.59	-0.7
1,029,377	-		DDA3937_RS04665	0.59	+1.2
1,029,380	-		DDA3937_RS04665	0.60	-0.4
1,029,380	-		DDA3937_RS04665	0.60	+1.0
1,029,408	+		DDA3937_RS04665	0.64	-0.4
1,029,409	-		DDA3937_RS04665	0.64	+0.2
1,029,451	+		DDA3937_RS04665	0.71	+0.7
1,029,451	+		DDA3937_RS04665	0.71	-0.9
1,029,452	-		DDA3937_RS04665	0.71	-2.9
1,029,452	-		DDA3937_RS04665	0.71	-3.5
1,029,482	+		DDA3937_RS04665	0.76	+0.6
1,029,488	-		DDA3937_RS04665	0.77	-1.1
1,029,504	+		DDA3937_RS04665	0.80	+0.0
1,029,508	+		DDA3937_RS04665	0.80	+1.0
1,029,508	+		DDA3937_RS04665	0.80	+0.8
1,029,508	+		DDA3937_RS04665	0.80	-2.4
1,029,508	+		DDA3937_RS04665	0.80	+0.5
1,029,508	+		DDA3937_RS04665	0.80	+0.3
1,029,509	-		DDA3937_RS04665	0.80	-0.2
1,029,509	-		DDA3937_RS04665	0.80	-1.7
1,029,566	-		DDA3937_RS04665	0.90	+0.0
1,029,576	+				+0.2
1,029,576	+				-2.0
1,029,576	+				-2.4
1,029,577	-				+1.5
1,029,577	-				+0.4
1,029,577	-				-1.4
1,029,590	-				-0.2
1,029,595	+				-0.2
1,029,596	-				-0.3
1,029,599	-				+1.7
1,029,599	-				-2.2
1,029,670	-				-2.3
1,029,682	+				-3.6
1,029,682	+				-3.1
1,029,692	+				-1.2
1,029,693	-				-0.0
1,029,693	-				-1.8
1,029,742	+				+0.4
1,029,742	+				+1.7
1,029,742	+				+0.2
1,029,742	+				+1.3
1,029,743	-				-1.7
1,029,743	-				-2.7
1,029,743	-				+0.4
1,029,743	-				-0.8
1,029,743	-				+0.0
1,029,767	-				-3.2
1,029,769	+				-2.6
1,029,769	+				-0.2
1,029,777	+				+0.7
1,029,777	+				-0.9
1,029,801	+				+0.9
1,029,836	-				-3.7
1,029,838	+				-2.4
1,029,838	+				+0.6
1,029,838	+				+1.2
1,029,838	+				-0.7
1,029,838	+				-4.8
1,029,838	+				-1.9
1,029,839	-				-1.0
1,029,878	+				-2.3
1,029,917	-				-1.7
1,029,924	+				-0.4
1,029,924	+				-0.2
1,029,926	+				-1.4
1,029,926	+				-0.2
1,029,927	-				-3.5
1,029,932	+				-2.6
1,029,932	+				-0.6
1,029,933	-				+1.4
1,029,937	+				+0.3
1,029,937	+				+1.4
1,029,937	+				+0.3
1,029,938	-				-2.3
1,029,938	-				-1.4
1,029,938	-				-0.6
1,029,938	-				-1.7
1,029,943	+				-2.3
1,029,943	+				-1.4
1,029,943	+				-1.6
1,029,943	+				-1.6
1,029,943	+				+1.3
1,029,946	+				-1.9
1,029,946	+				+0.2
1,029,946	+				-2.0
1,029,951	+				+0.2
1,029,952	-				+0.9
1,029,952	-				-1.4
1,029,991	+				-3.3
1,029,991	+				+1.3
1,029,991	+				-0.6