Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03830 and DDA3937_RS03840 are separated by 532 nucleotides DDA3937_RS03840 and DDA3937_RS03845 are separated by 281 nucleotides
DDA3937_RS03830: DDA3937_RS03830 - MATE family efflux transporter, at 849,018 to 850,427
_RS03830
DDA3937_RS03840: DDA3937_RS03840 - IS3 family transposase, at 850,960 to 852,069
_RS03840
DDA3937_RS03845: DDA3937_RS03845 - hypothetical protein, at 852,351 to 853,034
_RS03845
Position (kb) 850
851
852
853 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 849.960 kb on - strand, within DDA3937_RS03830 at 849.980 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.044 kb on - strand, within DDA3937_RS03830 at 850.058 kb on - strand, within DDA3937_RS03830 at 850.136 kb on + strand, within DDA3937_RS03830 at 850.136 kb on + strand, within DDA3937_RS03830 at 850.137 kb on - strand, within DDA3937_RS03830 at 850.137 kb on - strand, within DDA3937_RS03830 at 850.143 kb on + strand, within DDA3937_RS03830 at 850.144 kb on - strand, within DDA3937_RS03830 at 850.156 kb on + strand, within DDA3937_RS03830 at 850.167 kb on + strand, within DDA3937_RS03830 at 850.167 kb on + strand, within DDA3937_RS03830 at 850.167 kb on + strand, within DDA3937_RS03830 at 850.168 kb on - strand, within DDA3937_RS03830 at 850.237 kb on + strand, within DDA3937_RS03830 at 850.240 kb on + strand, within DDA3937_RS03830 at 850.240 kb on + strand, within DDA3937_RS03830 at 850.240 kb on + strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.294 kb on + strand at 850.349 kb on + strand at 850.349 kb on + strand at 850.350 kb on - strand at 850.353 kb on + strand at 850.353 kb on + strand at 850.354 kb on - strand at 850.354 kb on - strand at 850.354 kb on - strand at 850.381 kb on + strand at 850.382 kb on - strand at 850.420 kb on + strand at 850.445 kb on + strand at 850.445 kb on + strand at 850.445 kb on + strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.459 kb on + strand at 850.460 kb on - strand at 850.466 kb on + strand at 850.466 kb on + strand at 850.467 kb on - strand at 850.467 kb on - strand at 850.467 kb on - strand at 850.511 kb on + strand at 850.511 kb on + strand at 850.511 kb on + strand at 850.511 kb on + strand at 850.512 kb on - strand at 850.512 kb on - strand at 850.564 kb on + strand at 850.564 kb on + strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.604 kb on + strand at 850.605 kb on - strand at 850.605 kb on - strand at 850.605 kb on - strand at 850.641 kb on - strand at 850.648 kb on + strand at 850.648 kb on + strand at 850.648 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.653 kb on - strand at 850.653 kb on - strand at 850.653 kb on - strand at 850.701 kb on - strand at 850.701 kb on - strand at 850.714 kb on + strand at 850.715 kb on - strand at 850.715 kb on - strand at 850.734 kb on + strand at 850.734 kb on + strand at 850.734 kb on + strand at 850.734 kb on + strand at 850.735 kb on - strand at 850.743 kb on + strand at 850.744 kb on - strand at 850.744 kb on - strand at 850.744 kb on - strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.754 kb on - strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.759 kb on + strand at 850.759 kb on + strand at 850.759 kb on + strand at 850.759 kb on + strand at 850.760 kb on - strand at 850.760 kb on - strand at 850.760 kb on - strand at 850.779 kb on - strand at 850.789 kb on + strand at 850.789 kb on + strand at 850.789 kb on + strand at 850.822 kb on + strand at 850.822 kb on + strand at 850.823 kb on - strand at 850.823 kb on - strand at 850.823 kb on - strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.909 kb on - strand at 850.925 kb on - strand at 850.925 kb on - strand at 850.925 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 851.043 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.048 kb on - strand at 851.071 kb on + strand, within DDA3937_RS03840 at 851.071 kb on + strand, within DDA3937_RS03840 at 851.073 kb on + strand, within DDA3937_RS03840 at 851.082 kb on + strand, within DDA3937_RS03840 at 851.082 kb on + strand, within DDA3937_RS03840 at 851.083 kb on - strand, within DDA3937_RS03840 at 851.099 kb on + strand, within DDA3937_RS03840 at 851.099 kb on + strand, within DDA3937_RS03840 at 851.100 kb on - strand, within DDA3937_RS03840 at 851.100 kb on - strand, within DDA3937_RS03840 at 851.114 kb on + strand, within DDA3937_RS03840 at 851.115 kb on - strand, within DDA3937_RS03840 at 851.115 kb on - strand, within DDA3937_RS03840 at 851.115 kb on - strand, within DDA3937_RS03840 at 851.124 kb on + strand, within DDA3937_RS03840 at 851.125 kb on - strand, within DDA3937_RS03840 at 851.125 kb on - strand, within DDA3937_RS03840 at 851.318 kb on - strand, within DDA3937_RS03840 at 851.318 kb on - strand, within DDA3937_RS03840 at 851.347 kb on + strand, within DDA3937_RS03840 at 851.362 kb on - strand, within DDA3937_RS03840 at 851.694 kb on - strand, within DDA3937_RS03840 at 852.060 kb on + strand at 852.063 kb on + strand at 852.071 kb on + strand at 852.071 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.119 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.128 kb on - strand at 852.130 kb on + strand at 852.231 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.238 kb on - strand at 852.245 kb on + strand at 852.245 kb on + strand at 852.246 kb on - strand at 852.258 kb on - strand at 852.259 kb on + strand at 852.259 kb on + strand at 852.260 kb on - strand at 852.281 kb on - strand at 852.285 kb on + strand at 852.286 kb on - strand at 852.308 kb on - strand at 852.321 kb on + strand at 852.402 kb on + strand at 852.402 kb on + strand at 852.403 kb on - strand at 852.403 kb on - strand at 852.427 kb on + strand, within DDA3937_RS03845 at 852.452 kb on + strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.522 kb on + strand, within DDA3937_RS03845 at 852.538 kb on - strand, within DDA3937_RS03845 at 852.590 kb on + strand, within DDA3937_RS03845 at 852.591 kb on - strand, within DDA3937_RS03845 at 852.622 kb on + strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.640 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.705 kb on + strand, within DDA3937_RS03845 at 852.774 kb on - strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.838 kb on - strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 853.004 kb on + strand at 853.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 849,960 - DDA3937_RS03830 0.67 +0.5 849,980 + DDA3937_RS03830 0.68 +0.2 850,013 + DDA3937_RS03830 0.71 -1.7 850,013 + DDA3937_RS03830 0.71 -3.2 850,013 + DDA3937_RS03830 0.71 +1.5 850,013 + DDA3937_RS03830 0.71 -1.1 850,014 - DDA3937_RS03830 0.71 -1.3 850,014 - DDA3937_RS03830 0.71 +0.2 850,014 - DDA3937_RS03830 0.71 -0.2 850,014 - DDA3937_RS03830 0.71 -2.7 850,044 - DDA3937_RS03830 0.73 -2.1 850,058 - DDA3937_RS03830 0.74 -2.5 850,136 + DDA3937_RS03830 0.79 -2.2 850,136 + DDA3937_RS03830 0.79 -0.1 850,137 - DDA3937_RS03830 0.79 +0.7 850,137 - DDA3937_RS03830 0.79 +0.6 850,143 + DDA3937_RS03830 0.80 +0.8 850,144 - DDA3937_RS03830 0.80 -3.1 850,156 + DDA3937_RS03830 0.81 +0.4 850,167 + DDA3937_RS03830 0.81 -0.0 850,167 + DDA3937_RS03830 0.81 -3.8 850,167 + DDA3937_RS03830 0.81 -1.1 850,168 - DDA3937_RS03830 0.82 +1.9 850,237 + DDA3937_RS03830 0.86 -2.5 850,240 + DDA3937_RS03830 0.87 -1.1 850,240 + DDA3937_RS03830 0.87 +1.5 850,240 + DDA3937_RS03830 0.87 +1.4 850,241 - DDA3937_RS03830 0.87 -1.5 850,241 - DDA3937_RS03830 0.87 +1.0 850,241 - DDA3937_RS03830 0.87 -0.6 850,241 - DDA3937_RS03830 0.87 -0.8 850,294 + +2.5 850,349 + -2.0 850,349 + -1.1 850,350 - -1.2 850,353 + -2.0 850,353 + -1.4 850,354 - -0.5 850,354 - +0.8 850,354 - -1.7 850,381 + +0.2 850,382 - -2.3 850,420 + +0.5 850,445 + -2.8 850,445 + -3.1 850,445 + -0.1 850,446 - +0.5 850,446 - +1.1 850,446 - -1.3 850,446 - -1.7 850,446 - +1.5 850,446 - -1.1 850,459 + -0.4 850,460 - -2.4 850,466 + -0.8 850,466 + -1.3 850,467 - +0.5 850,467 - -2.4 850,467 - -0.7 850,511 + +1.7 850,511 + -3.0 850,511 + -0.2 850,511 + -1.3 850,512 - +0.5 850,512 - -0.7 850,564 + -1.2 850,564 + -0.1 850,565 - +0.6 850,565 - -1.3 850,604 + -0.6 850,605 - -0.8 850,605 - -0.1 850,605 - +0.4 850,641 - -1.0 850,648 + -0.5 850,648 + +0.3 850,648 + -2.1 850,652 + +1.5 850,652 + -1.1 850,652 + -0.5 850,652 + +0.8 850,652 + -2.5 850,653 - +0.1 850,653 - +1.8 850,653 - -1.4 850,701 - +0.6 850,701 - -0.1 850,714 + -1.3 850,715 - +0.5 850,715 - -0.2 850,734 + +0.6 850,734 + -2.1 850,734 + -1.1 850,734 + -2.1 850,735 - -2.2 850,743 + +1.3 850,744 - +2.0 850,744 - +0.7 850,744 - +1.2 850,753 + +0.3 850,753 + +1.3 850,753 + -1.5 850,753 + -2.3 850,753 + -2.9 850,754 - -2.2 850,755 + +0.5 850,755 + -2.7 850,755 + +1.0 850,755 + +1.7 850,755 + -1.8 850,755 + -0.1 850,755 + +0.1 850,755 + -2.3 850,755 + -1.0 850,755 + +0.9 850,755 + -0.6 850,755 + -1.3 850,755 + +1.2 850,755 + -0.1 850,756 - -3.8 850,756 - -0.6 850,756 - -1.7 850,756 - -3.9 850,756 - -2.9 850,756 - -0.1 850,756 - -3.5 850,756 - -1.8 850,756 - -2.3 850,756 - -1.6 850,756 - +1.2 850,759 + -0.8 850,759 + -1.5 850,759 + +1.2 850,759 + -3.2 850,760 - -1.0 850,760 - -1.3 850,760 - -0.9 850,779 - -2.7 850,789 + +1.0 850,789 + -2.0 850,789 + -1.4 850,822 + +1.2 850,822 + -1.6 850,823 - +1.6 850,823 - -1.5 850,823 - -3.1 850,878 + +0.2 850,878 + -1.1 850,878 + -1.7 850,878 + -2.1 850,878 + -0.3 850,878 + -1.1 850,878 + -0.4 850,878 + +1.8 850,878 + -0.1 850,879 - -1.1 850,879 - +1.4 850,879 - -0.1 850,879 - +1.5 850,879 - -1.3 850,879 - +1.7 850,909 - -2.0 850,925 - -2.6 850,925 - +0.9 850,925 - +2.2 850,928 - -0.1 850,928 - -3.6 850,928 - -0.8 850,928 - -1.5 850,928 - -1.1 850,928 - -2.4 851,043 + +0.5 851,047 + +1.6 851,047 + -1.4 851,047 + -3.6 851,047 + +0.2 851,047 + -1.3 851,048 - -0.1 851,071 + DDA3937_RS03840 0.10 -3.1 851,071 + DDA3937_RS03840 0.10 -0.3 851,073 + DDA3937_RS03840 0.10 -0.3 851,082 + DDA3937_RS03840 0.11 +0.1 851,082 + DDA3937_RS03840 0.11 -0.8 851,083 - DDA3937_RS03840 0.11 -0.5 851,099 + DDA3937_RS03840 0.13 -1.6 851,099 + DDA3937_RS03840 0.13 -0.2 851,100 - DDA3937_RS03840 0.13 +2.5 851,100 - DDA3937_RS03840 0.13 -2.4 851,114 + DDA3937_RS03840 0.14 -0.2 851,115 - DDA3937_RS03840 0.14 -2.1 851,115 - DDA3937_RS03840 0.14 +0.4 851,115 - DDA3937_RS03840 0.14 -2.2 851,124 + DDA3937_RS03840 0.15 -3.0 851,125 - DDA3937_RS03840 0.15 -2.6 851,125 - DDA3937_RS03840 0.15 +1.5 851,318 - DDA3937_RS03840 0.32 -0.1 851,318 - DDA3937_RS03840 0.32 -0.4 851,347 + DDA3937_RS03840 0.35 -3.5 851,362 - DDA3937_RS03840 0.36 -2.0 851,694 - DDA3937_RS03840 0.66 -2.2 852,060 + -3.1 852,063 + -2.5 852,071 + -2.7 852,071 + -0.7 852,080 + -1.5 852,080 + +1.2 852,080 + -0.9 852,119 + -1.3 852,127 + -0.5 852,127 + +0.8 852,127 + +0.4 852,128 - -3.6 852,130 + -1.0 852,231 + +0.9 852,237 + +0.4 852,237 + -2.4 852,237 + -3.0 852,238 - -1.7 852,245 + -0.4 852,245 + +0.6 852,246 - -0.5 852,258 - +0.6 852,259 + -2.2 852,259 + -0.0 852,260 - +0.3 852,281 - -1.5 852,285 + -1.5 852,286 - -3.3 852,308 - -2.4 852,321 + -1.0 852,402 + -0.8 852,402 + +2.6 852,403 - -2.8 852,403 - -0.4 852,427 + DDA3937_RS03845 0.11 -2.9 852,452 + DDA3937_RS03845 0.15 -2.6 852,453 - DDA3937_RS03845 0.15 -2.6 852,453 - DDA3937_RS03845 0.15 -3.6 852,453 - DDA3937_RS03845 0.15 -2.2 852,500 - DDA3937_RS03845 0.22 -1.8 852,500 - DDA3937_RS03845 0.22 -1.3 852,522 + DDA3937_RS03845 0.25 +0.7 852,538 - DDA3937_RS03845 0.27 +0.0 852,590 + DDA3937_RS03845 0.35 -0.5 852,591 - DDA3937_RS03845 0.35 +1.3 852,622 + DDA3937_RS03845 0.40 -0.1 852,623 - DDA3937_RS03845 0.40 -2.1 852,623 - DDA3937_RS03845 0.40 -2.1 852,623 - DDA3937_RS03845 0.40 -1.0 852,623 - DDA3937_RS03845 0.40 +0.7 852,640 + DDA3937_RS03845 0.42 -0.3 852,672 + DDA3937_RS03845 0.47 +1.7 852,672 + DDA3937_RS03845 0.47 -0.1 852,672 + DDA3937_RS03845 0.47 -0.5 852,705 + DDA3937_RS03845 0.52 -0.1 852,774 - DDA3937_RS03845 0.62 -0.5 852,837 + DDA3937_RS03845 0.71 -2.0 852,837 + DDA3937_RS03845 0.71 -0.8 852,837 + DDA3937_RS03845 0.71 -0.6 852,838 - DDA3937_RS03845 0.71 -1.8 852,912 + DDA3937_RS03845 0.82 +0.7 852,912 + DDA3937_RS03845 0.82 -1.1 852,913 - DDA3937_RS03845 0.82 -1.1 852,913 - DDA3937_RS03845 0.82 +0.2 852,941 + DDA3937_RS03845 0.86 -1.1 852,941 + DDA3937_RS03845 0.86 -0.8 852,941 + DDA3937_RS03845 0.86 -0.2 853,004 + -1.1 853,005 - -1.5
Or see this region's nucleotide sequence