Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03815 and DDA3937_RS03820 are separated by 93 nucleotides DDA3937_RS03820 and DDA3937_RS03825 are separated by 125 nucleotides DDA3937_RS03825 and DDA3937_RS03830 are separated by 32 nucleotides
DDA3937_RS03815: DDA3937_RS03815 - efflux RND transporter periplasmic adaptor subunit, at 845,555 to 846,670
_RS03815
DDA3937_RS03820: DDA3937_RS03820 - TetR/AcrR family transcriptional regulator, at 846,764 to 847,381
_RS03820
DDA3937_RS03825: DDA3937_RS03825 - efflux transporter outer membrane subunit, at 847,507 to 848,985
_RS03825
DDA3937_RS03830: DDA3937_RS03830 - MATE family efflux transporter, at 849,018 to 850,427
_RS03830
Position (kb) 847
848
849 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 846.545 kb on + strand, within DDA3937_RS03815 at 846.546 kb on - strand, within DDA3937_RS03815 at 846.560 kb on + strand at 846.561 kb on - strand at 846.670 kb on + strand at 846.670 kb on + strand at 846.670 kb on + strand at 846.670 kb on + strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.671 kb on - strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.674 kb on + strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.675 kb on - strand at 846.693 kb on + strand at 846.693 kb on + strand at 846.694 kb on - strand at 846.694 kb on - strand at 846.765 kb on + strand at 846.765 kb on + strand at 846.766 kb on - strand at 846.766 kb on - strand at 846.786 kb on - strand at 847.382 kb on - strand at 847.382 kb on - strand at 847.382 kb on - strand at 847.382 kb on - strand at 847.404 kb on + strand at 847.404 kb on + strand at 847.404 kb on + strand at 847.404 kb on + strand at 847.405 kb on - strand at 847.405 kb on - strand at 847.405 kb on - strand at 847.426 kb on - strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.493 kb on + strand at 847.494 kb on - strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.506 kb on + strand at 847.507 kb on - strand at 847.511 kb on + strand at 847.579 kb on + strand at 847.579 kb on + strand at 847.580 kb on - strand at 847.613 kb on - strand at 847.700 kb on + strand, within DDA3937_RS03825 at 847.710 kb on + strand, within DDA3937_RS03825 at 847.710 kb on + strand, within DDA3937_RS03825 at 847.846 kb on + strand, within DDA3937_RS03825 at 847.846 kb on + strand, within DDA3937_RS03825 at 847.847 kb on - strand, within DDA3937_RS03825 at 847.877 kb on + strand, within DDA3937_RS03825 at 847.878 kb on - strand at 847.878 kb on - strand, within DDA3937_RS03825 at 847.878 kb on - strand, within DDA3937_RS03825 at 847.907 kb on - strand, within DDA3937_RS03825 at 847.911 kb on + strand, within DDA3937_RS03825 at 847.911 kb on + strand, within DDA3937_RS03825 at 847.919 kb on - strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.065 kb on + strand, within DDA3937_RS03825 at 848.066 kb on - strand, within DDA3937_RS03825 at 848.066 kb on - strand, within DDA3937_RS03825 at 848.085 kb on - strand, within DDA3937_RS03825 at 848.117 kb on + strand, within DDA3937_RS03825 at 848.118 kb on - strand, within DDA3937_RS03825 at 848.118 kb on - strand, within DDA3937_RS03825 at 848.118 kb on - strand, within DDA3937_RS03825 at 848.158 kb on + strand, within DDA3937_RS03825 at 848.158 kb on + strand, within DDA3937_RS03825 at 848.159 kb on - strand, within DDA3937_RS03825 at 848.442 kb on + strand, within DDA3937_RS03825 at 848.464 kb on + strand, within DDA3937_RS03825 at 848.464 kb on + strand, within DDA3937_RS03825 at 848.465 kb on - strand, within DDA3937_RS03825 at 848.532 kb on + strand, within DDA3937_RS03825 at 848.532 kb on + strand, within DDA3937_RS03825 at 848.533 kb on - strand, within DDA3937_RS03825 at 848.791 kb on + strand, within DDA3937_RS03825 at 848.792 kb on - strand, within DDA3937_RS03825 at 848.841 kb on + strand at 848.842 kb on - strand at 848.842 kb on - strand at 848.842 kb on - strand at 848.991 kb on - strand at 848.996 kb on + strand at 849.026 kb on + strand at 849.027 kb on - strand at 849.031 kb on + strand at 849.035 kb on - strand at 849.184 kb on - strand, within DDA3937_RS03830 at 849.184 kb on - strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.211 kb on + strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.212 kb on - strand, within DDA3937_RS03830 at 849.233 kb on - strand, within DDA3937_RS03830 at 849.289 kb on + strand, within DDA3937_RS03830 at 849.290 kb on - strand, within DDA3937_RS03830 at 849.349 kb on + strand, within DDA3937_RS03830 at 849.350 kb on - strand, within DDA3937_RS03830 at 849.362 kb on + strand, within DDA3937_RS03830 at 849.363 kb on - strand, within DDA3937_RS03830 at 849.365 kb on + strand, within DDA3937_RS03830 at 849.366 kb on - strand, within DDA3937_RS03830 at 849.366 kb on - strand, within DDA3937_RS03830 at 849.401 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand at 849.684 kb on + strand, within DDA3937_RS03830 at 849.684 kb on + strand at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.685 kb on - strand, within DDA3937_RS03830 at 849.687 kb on + strand, within DDA3937_RS03830 at 849.687 kb on + strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.688 kb on - strand, within DDA3937_RS03830 at 849.703 kb on + strand, within DDA3937_RS03830 at 849.703 kb on + strand, within DDA3937_RS03830 at 849.703 kb on + strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.704 kb on - strand, within DDA3937_RS03830 at 849.706 kb on + strand, within DDA3937_RS03830 at 849.706 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.719 kb on + strand, within DDA3937_RS03830 at 849.741 kb on - strand, within DDA3937_RS03830 at 849.819 kb on - strand, within DDA3937_RS03830 at 849.918 kb on + strand, within DDA3937_RS03830 at 849.918 kb on + strand, within DDA3937_RS03830 at 849.919 kb on - strand, within DDA3937_RS03830 at 849.960 kb on - strand, within DDA3937_RS03830 at 849.980 kb on + strand, within DDA3937_RS03830
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 846,545 + DDA3937_RS03815 0.89 -3.1 846,546 - DDA3937_RS03815 0.89 +0.4 846,560 + +0.0 846,561 - -3.2 846,670 + -3.0 846,670 + +0.0 846,670 + -4.2 846,670 + -2.2 846,671 - -1.1 846,671 - +0.3 846,671 - -3.4 846,671 - -0.5 846,671 - -0.3 846,671 - -0.7 846,671 - -1.8 846,674 + -0.6 846,674 + -0.8 846,674 + +2.3 846,674 + -0.5 846,674 + -0.8 846,674 + +0.0 846,674 + +0.3 846,675 - +1.6 846,675 - +0.8 846,675 - +3.1 846,675 - +0.5 846,675 - -2.8 846,675 - -0.9 846,675 - -1.0 846,693 + -0.1 846,693 + -0.5 846,694 - -0.0 846,694 - +0.4 846,765 + +0.3 846,765 + -3.0 846,766 - +0.3 846,766 - -0.3 846,786 - -2.0 847,382 - +0.2 847,382 - -1.5 847,382 - -1.7 847,382 - -1.1 847,404 + -4.7 847,404 + -2.3 847,404 + -1.5 847,404 + -1.8 847,405 - -3.2 847,405 - +0.5 847,405 - +0.0 847,426 - +1.5 847,493 + +1.3 847,493 + +1.2 847,493 + +0.8 847,493 + -2.8 847,493 + -1.8 847,494 - -2.3 847,506 + +0.5 847,506 + -0.8 847,506 + +0.4 847,506 + -1.9 847,506 + -2.0 847,507 - +0.5 847,511 + -0.7 847,579 + +2.0 847,579 + +0.1 847,580 - -0.4 847,613 - +3.4 847,700 + DDA3937_RS03825 0.13 -2.6 847,710 + DDA3937_RS03825 0.14 +1.6 847,710 + DDA3937_RS03825 0.14 -2.5 847,846 + DDA3937_RS03825 0.23 +0.5 847,846 + DDA3937_RS03825 0.23 -3.2 847,847 - DDA3937_RS03825 0.23 +2.3 847,877 + DDA3937_RS03825 0.25 -0.8 847,878 - -0.8 847,878 - DDA3937_RS03825 0.25 +0.3 847,878 - DDA3937_RS03825 0.25 +1.7 847,907 - DDA3937_RS03825 0.27 +0.6 847,911 + DDA3937_RS03825 0.27 -3.4 847,911 + DDA3937_RS03825 0.27 -0.2 847,919 - DDA3937_RS03825 0.28 -0.0 848,065 + DDA3937_RS03825 0.38 +0.4 848,065 + DDA3937_RS03825 0.38 -1.8 848,065 + DDA3937_RS03825 0.38 +0.7 848,065 + DDA3937_RS03825 0.38 -2.7 848,065 + DDA3937_RS03825 0.38 +0.4 848,065 + DDA3937_RS03825 0.38 -3.2 848,065 + DDA3937_RS03825 0.38 +0.1 848,066 - DDA3937_RS03825 0.38 +0.1 848,066 - DDA3937_RS03825 0.38 -1.2 848,085 - DDA3937_RS03825 0.39 -1.0 848,117 + DDA3937_RS03825 0.41 -0.3 848,118 - DDA3937_RS03825 0.41 -2.5 848,118 - DDA3937_RS03825 0.41 -0.8 848,118 - DDA3937_RS03825 0.41 +1.4 848,158 + DDA3937_RS03825 0.44 -3.0 848,158 + DDA3937_RS03825 0.44 -1.5 848,159 - DDA3937_RS03825 0.44 -3.2 848,442 + DDA3937_RS03825 0.63 -1.1 848,464 + DDA3937_RS03825 0.65 -3.3 848,464 + DDA3937_RS03825 0.65 -0.9 848,465 - DDA3937_RS03825 0.65 -1.5 848,532 + DDA3937_RS03825 0.69 +0.9 848,532 + DDA3937_RS03825 0.69 +2.4 848,533 - DDA3937_RS03825 0.69 +0.5 848,791 + DDA3937_RS03825 0.87 -0.8 848,792 - DDA3937_RS03825 0.87 -1.7 848,841 + -0.3 848,842 - -0.3 848,842 - -1.0 848,842 - -2.2 848,991 - -2.9 848,996 + -0.8 849,026 + -0.1 849,027 - -2.3 849,031 + -0.1 849,035 - -0.5 849,184 - DDA3937_RS03830 0.12 +0.0 849,184 - DDA3937_RS03830 0.12 -1.1 849,211 + DDA3937_RS03830 0.14 -2.0 849,211 + DDA3937_RS03830 0.14 -0.4 849,211 + DDA3937_RS03830 0.14 -0.5 849,211 + DDA3937_RS03830 0.14 +0.1 849,211 + DDA3937_RS03830 0.14 -1.7 849,211 + DDA3937_RS03830 0.14 -0.3 849,211 + DDA3937_RS03830 0.14 +1.6 849,211 + DDA3937_RS03830 0.14 -1.2 849,211 + DDA3937_RS03830 0.14 -1.0 849,212 - DDA3937_RS03830 0.14 -1.1 849,212 - DDA3937_RS03830 0.14 -2.0 849,212 - DDA3937_RS03830 0.14 -1.1 849,212 - DDA3937_RS03830 0.14 -0.5 849,212 - DDA3937_RS03830 0.14 +1.7 849,212 - DDA3937_RS03830 0.14 +0.6 849,212 - DDA3937_RS03830 0.14 -1.8 849,212 - DDA3937_RS03830 0.14 -0.3 849,212 - DDA3937_RS03830 0.14 -1.3 849,212 - DDA3937_RS03830 0.14 -0.5 849,233 - DDA3937_RS03830 0.15 -0.7 849,289 + DDA3937_RS03830 0.19 +0.4 849,290 - DDA3937_RS03830 0.19 -0.4 849,349 + DDA3937_RS03830 0.23 +2.7 849,350 - DDA3937_RS03830 0.24 -0.8 849,362 + DDA3937_RS03830 0.24 +2.1 849,363 - DDA3937_RS03830 0.24 -0.3 849,365 + DDA3937_RS03830 0.25 -0.4 849,366 - DDA3937_RS03830 0.25 -1.1 849,366 - DDA3937_RS03830 0.25 -1.3 849,401 + DDA3937_RS03830 0.27 -0.1 849,684 + DDA3937_RS03830 0.47 +1.0 849,684 + DDA3937_RS03830 0.47 -1.8 849,684 + DDA3937_RS03830 0.47 -1.2 849,684 + DDA3937_RS03830 0.47 -1.3 849,684 + +0.5 849,684 + DDA3937_RS03830 0.47 -2.3 849,684 + DDA3937_RS03830 0.47 +0.4 849,684 + DDA3937_RS03830 0.47 -1.1 849,684 + DDA3937_RS03830 0.47 -2.4 849,684 + DDA3937_RS03830 0.47 -0.5 849,684 + -1.3 849,684 + DDA3937_RS03830 0.47 +0.7 849,684 + +0.5 849,685 - DDA3937_RS03830 0.47 -0.7 849,685 - DDA3937_RS03830 0.47 -1.3 849,685 - DDA3937_RS03830 0.47 -0.1 849,685 - DDA3937_RS03830 0.47 -1.3 849,685 - DDA3937_RS03830 0.47 +0.8 849,685 - DDA3937_RS03830 0.47 -1.3 849,685 - DDA3937_RS03830 0.47 -3.2 849,687 + DDA3937_RS03830 0.47 +0.6 849,687 + DDA3937_RS03830 0.47 +0.0 849,688 - DDA3937_RS03830 0.48 -2.6 849,688 - DDA3937_RS03830 0.48 -4.0 849,688 - DDA3937_RS03830 0.48 -2.0 849,688 - DDA3937_RS03830 0.48 +0.2 849,688 - DDA3937_RS03830 0.48 +0.2 849,688 - DDA3937_RS03830 0.48 -1.1 849,703 + DDA3937_RS03830 0.49 +0.8 849,703 + DDA3937_RS03830 0.49 -1.3 849,703 + DDA3937_RS03830 0.49 +0.4 849,704 - DDA3937_RS03830 0.49 -0.1 849,704 - DDA3937_RS03830 0.49 -1.3 849,704 - DDA3937_RS03830 0.49 -1.5 849,704 - DDA3937_RS03830 0.49 -1.8 849,706 + DDA3937_RS03830 0.49 +0.0 849,706 + DDA3937_RS03830 0.49 -0.1 849,719 + DDA3937_RS03830 0.50 +1.5 849,719 + DDA3937_RS03830 0.50 -1.5 849,719 + DDA3937_RS03830 0.50 -0.1 849,719 + DDA3937_RS03830 0.50 -1.3 849,741 - DDA3937_RS03830 0.51 +2.1 849,819 - DDA3937_RS03830 0.57 -1.2 849,918 + DDA3937_RS03830 0.64 -0.1 849,918 + DDA3937_RS03830 0.64 -2.0 849,919 - DDA3937_RS03830 0.64 +1.5 849,960 - DDA3937_RS03830 0.67 +0.5 849,980 + DDA3937_RS03830 0.68 +0.2
Or see this region's nucleotide sequence