Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03780 and DDA3937_RS03785 are separated by 56 nucleotides DDA3937_RS03785 and DDA3937_RS03790 are separated by 80 nucleotides DDA3937_RS03790 and DDA3937_RS03795 are separated by 206 nucleotides
DDA3937_RS03780: DDA3937_RS03780 - NAD(P)H-binding protein, at 837,616 to 838,251
_RS03780
DDA3937_RS03785: DDA3937_RS03785 - DoxX family protein, at 838,308 to 838,715
_RS03785
DDA3937_RS03790: DDA3937_RS03790 - helix-turn-helix transcriptional regulator, at 838,796 to 839,182
_RS03790
DDA3937_RS03795: DDA3937_RS03795 - SDR family NAD(P)-dependent oxidoreductase, at 839,389 to 840,210
_RS03795
Position (kb) 838
839 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 837.308 kb on + strand at 837.308 kb on + strand at 837.308 kb on + strand at 837.308 kb on + strand at 837.308 kb on + strand at 837.309 kb on - strand at 837.359 kb on - strand at 837.415 kb on + strand at 837.416 kb on - strand at 837.421 kb on + strand at 837.422 kb on - strand at 837.422 kb on - strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.425 kb on + strand at 837.426 kb on - strand at 837.426 kb on - strand at 837.426 kb on - strand at 837.434 kb on + strand at 837.435 kb on - strand at 837.494 kb on - strand at 837.494 kb on - strand at 837.500 kb on + strand at 837.500 kb on + strand at 837.500 kb on + strand at 837.500 kb on + strand at 837.501 kb on - strand at 837.501 kb on - strand at 837.501 kb on - strand at 837.504 kb on + strand at 837.504 kb on + strand at 837.504 kb on + strand at 837.504 kb on + strand at 837.504 kb on + strand at 837.505 kb on - strand at 837.505 kb on - strand at 837.505 kb on - strand at 837.533 kb on + strand at 837.574 kb on - strand at 837.574 kb on - strand at 837.574 kb on - strand at 837.602 kb on + strand at 837.602 kb on + strand at 837.603 kb on - strand at 837.603 kb on - strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.678 kb on + strand at 837.679 kb on - strand at 837.679 kb on - strand at 837.679 kb on - strand at 837.683 kb on - strand, within DDA3937_RS03780 at 837.731 kb on + strand, within DDA3937_RS03780 at 837.731 kb on + strand, within DDA3937_RS03780 at 837.732 kb on - strand, within DDA3937_RS03780 at 837.732 kb on - strand, within DDA3937_RS03780 at 837.877 kb on + strand, within DDA3937_RS03780 at 837.877 kb on + strand, within DDA3937_RS03780 at 837.877 kb on + strand, within DDA3937_RS03780 at 837.877 kb on + strand, within DDA3937_RS03780 at 837.877 kb on + strand, within DDA3937_RS03780 at 837.878 kb on - strand, within DDA3937_RS03780 at 837.878 kb on - strand, within DDA3937_RS03780 at 837.878 kb on - strand, within DDA3937_RS03780 at 837.898 kb on + strand, within DDA3937_RS03780 at 838.030 kb on + strand, within DDA3937_RS03780 at 838.077 kb on + strand, within DDA3937_RS03780 at 838.077 kb on + strand, within DDA3937_RS03780 at 838.078 kb on - strand, within DDA3937_RS03780 at 838.087 kb on + strand, within DDA3937_RS03780 at 838.087 kb on + strand, within DDA3937_RS03780 at 838.087 kb on + strand, within DDA3937_RS03780 at 838.088 kb on - strand, within DDA3937_RS03780 at 838.088 kb on - strand, within DDA3937_RS03780 at 838.117 kb on + strand, within DDA3937_RS03780 at 838.117 kb on + strand, within DDA3937_RS03780 at 838.118 kb on - strand, within DDA3937_RS03780 at 838.118 kb on - strand, within DDA3937_RS03780 at 838.126 kb on + strand, within DDA3937_RS03780 at 838.126 kb on + strand, within DDA3937_RS03780 at 838.127 kb on - strand, within DDA3937_RS03780 at 838.171 kb on + strand, within DDA3937_RS03780 at 838.172 kb on - strand, within DDA3937_RS03780 at 838.172 kb on - strand, within DDA3937_RS03780 at 838.172 kb on - strand, within DDA3937_RS03780 at 838.173 kb on + strand, within DDA3937_RS03780 at 838.174 kb on - strand, within DDA3937_RS03780 at 838.174 kb on - strand, within DDA3937_RS03780 at 838.208 kb on + strand at 838.209 kb on - strand at 838.254 kb on + strand at 838.274 kb on + strand at 838.274 kb on + strand at 838.274 kb on + strand at 838.274 kb on + strand at 838.274 kb on + strand at 838.275 kb on - strand at 838.275 kb on - strand at 838.275 kb on - strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.276 kb on + strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.277 kb on - strand at 838.305 kb on + strand at 838.305 kb on + strand at 838.305 kb on + strand at 838.306 kb on - strand at 838.309 kb on + strand at 838.329 kb on + strand at 838.329 kb on + strand at 838.480 kb on + strand, within DDA3937_RS03785 at 838.480 kb on + strand, within DDA3937_RS03785 at 838.480 kb on + strand, within DDA3937_RS03785 at 838.480 kb on + strand, within DDA3937_RS03785 at 838.481 kb on - strand, within DDA3937_RS03785 at 838.481 kb on - strand, within DDA3937_RS03785 at 838.481 kb on - strand, within DDA3937_RS03785 at 838.481 kb on - strand, within DDA3937_RS03785 at 838.481 kb on - strand, within DDA3937_RS03785 at 838.481 kb on - strand, within DDA3937_RS03785 at 838.611 kb on + strand, within DDA3937_RS03785 at 838.642 kb on + strand, within DDA3937_RS03785 at 838.642 kb on + strand, within DDA3937_RS03785 at 838.642 kb on + strand, within DDA3937_RS03785 at 838.642 kb on + strand, within DDA3937_RS03785 at 838.643 kb on - strand at 838.643 kb on - strand, within DDA3937_RS03785 at 838.643 kb on - strand, within DDA3937_RS03785 at 838.644 kb on + strand, within DDA3937_RS03785 at 838.644 kb on + strand, within DDA3937_RS03785 at 838.645 kb on - strand, within DDA3937_RS03785 at 838.645 kb on - strand, within DDA3937_RS03785 at 838.645 kb on - strand, within DDA3937_RS03785 at 838.645 kb on - strand, within DDA3937_RS03785 at 838.663 kb on + strand, within DDA3937_RS03785 at 838.664 kb on - strand, within DDA3937_RS03785 at 838.664 kb on - strand at 838.664 kb on - strand, within DDA3937_RS03785 at 838.677 kb on + strand at 838.678 kb on - strand at 838.678 kb on - strand at 838.678 kb on - strand at 838.685 kb on + strand at 838.685 kb on + strand at 838.685 kb on + strand at 838.685 kb on + strand at 838.685 kb on + strand at 838.686 kb on - strand at 838.686 kb on - strand at 838.696 kb on + strand at 838.696 kb on + strand at 838.697 kb on - strand at 838.697 kb on - strand at 838.700 kb on + strand at 838.700 kb on + strand at 838.700 kb on + strand at 838.700 kb on + strand at 838.700 kb on + strand at 838.700 kb on + strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.701 kb on - strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.702 kb on + strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.703 kb on - strand at 838.707 kb on - strand at 838.843 kb on + strand, within DDA3937_RS03790 at 838.843 kb on + strand, within DDA3937_RS03790 at 838.843 kb on + strand, within DDA3937_RS03790 at 838.844 kb on - strand, within DDA3937_RS03790 at 838.844 kb on - strand, within DDA3937_RS03790 at 838.844 kb on - strand, within DDA3937_RS03790 at 838.844 kb on - strand, within DDA3937_RS03790 at 838.844 kb on - strand, within DDA3937_RS03790 at 838.885 kb on + strand at 838.886 kb on - strand, within DDA3937_RS03790 at 838.929 kb on - strand, within DDA3937_RS03790 at 838.966 kb on + strand, within DDA3937_RS03790 at 838.967 kb on - strand, within DDA3937_RS03790 at 838.967 kb on - strand, within DDA3937_RS03790 at 839.060 kb on + strand, within DDA3937_RS03790 at 839.129 kb on + strand, within DDA3937_RS03790 at 839.129 kb on + strand, within DDA3937_RS03790 at 839.129 kb on + strand, within DDA3937_RS03790 at 839.129 kb on + strand, within DDA3937_RS03790 at 839.130 kb on - strand, within DDA3937_RS03790 at 839.180 kb on + strand at 839.180 kb on + strand at 839.181 kb on - strand at 839.181 kb on - strand at 839.231 kb on + strand at 839.232 kb on - strand at 839.232 kb on - strand at 839.232 kb on - strand at 839.232 kb on - strand at 839.232 kb on - strand at 839.232 kb on - strand at 839.235 kb on + strand at 839.235 kb on + strand at 839.235 kb on + strand at 839.236 kb on - strand at 839.236 kb on - strand at 839.236 kb on - strand at 839.236 kb on - strand at 839.268 kb on + strand at 839.268 kb on + strand at 839.268 kb on + strand at 839.269 kb on - strand at 839.269 kb on - strand at 839.296 kb on + strand at 839.296 kb on + strand at 839.296 kb on + strand at 839.297 kb on - strand at 839.297 kb on - strand at 839.297 kb on - strand at 839.297 kb on - strand at 839.297 kb on - strand at 839.316 kb on - strand at 839.325 kb on + strand at 839.337 kb on - strand at 839.459 kb on + strand at 839.459 kb on + strand at 839.460 kb on - strand at 839.465 kb on + strand at 839.465 kb on + strand at 839.465 kb on + strand at 839.466 kb on - strand at 839.466 kb on - strand at 839.466 kb on - strand at 839.537 kb on - strand, within DDA3937_RS03795 at 839.618 kb on + strand at 839.618 kb on + strand, within DDA3937_RS03795 at 839.639 kb on + strand, within DDA3937_RS03795 at 839.639 kb on + strand, within DDA3937_RS03795 at 839.639 kb on + strand, within DDA3937_RS03795 at 839.639 kb on + strand, within DDA3937_RS03795 at 839.639 kb on + strand, within DDA3937_RS03795 at 839.640 kb on - strand, within DDA3937_RS03795 at 839.640 kb on - strand, within DDA3937_RS03795 at 839.697 kb on + strand, within DDA3937_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 837,308 + -2.8 837,308 + -2.0 837,308 + +1.0 837,308 + -1.4 837,308 + +2.3 837,309 - -1.4 837,359 - -1.5 837,415 + -1.1 837,416 - +0.3 837,421 + -2.0 837,422 - -2.3 837,422 - -2.6 837,425 + -1.1 837,425 + +2.8 837,425 + -1.7 837,425 + +1.5 837,425 + +2.0 837,425 + -0.5 837,425 + +2.2 837,425 + +1.7 837,425 + -1.6 837,425 + -0.3 837,425 + -0.2 837,425 + -0.4 837,426 - -3.4 837,426 - +0.0 837,426 - -0.8 837,434 + -2.4 837,435 - -1.0 837,494 - +2.0 837,494 - +0.5 837,500 + +0.6 837,500 + -2.3 837,500 + -3.5 837,500 + +0.9 837,501 - +1.7 837,501 - -2.2 837,501 - -2.0 837,504 + -0.1 837,504 + -1.7 837,504 + -3.2 837,504 + -1.1 837,504 + -0.5 837,505 - -0.5 837,505 - -1.5 837,505 - -0.8 837,533 + +0.6 837,574 - +1.8 837,574 - -1.3 837,574 - +0.2 837,602 + +1.8 837,602 + +1.8 837,603 - -1.3 837,603 - -1.2 837,678 + +1.0 837,678 + -2.0 837,678 + -3.8 837,678 + -2.1 837,678 + -1.4 837,678 + -1.1 837,678 + -1.7 837,678 + -2.7 837,679 - -1.7 837,679 - -1.9 837,679 - +0.8 837,683 - DDA3937_RS03780 0.11 -0.4 837,731 + DDA3937_RS03780 0.18 +0.8 837,731 + DDA3937_RS03780 0.18 -2.1 837,732 - DDA3937_RS03780 0.18 -0.3 837,732 - DDA3937_RS03780 0.18 -2.3 837,877 + DDA3937_RS03780 0.41 -0.3 837,877 + DDA3937_RS03780 0.41 -0.7 837,877 + DDA3937_RS03780 0.41 -0.5 837,877 + DDA3937_RS03780 0.41 +0.2 837,877 + DDA3937_RS03780 0.41 +1.5 837,878 - DDA3937_RS03780 0.41 -1.8 837,878 - DDA3937_RS03780 0.41 -0.5 837,878 - DDA3937_RS03780 0.41 -2.0 837,898 + DDA3937_RS03780 0.44 -0.5 838,030 + DDA3937_RS03780 0.65 +0.6 838,077 + DDA3937_RS03780 0.72 -2.9 838,077 + DDA3937_RS03780 0.72 +1.1 838,078 - DDA3937_RS03780 0.73 +1.0 838,087 + DDA3937_RS03780 0.74 -1.1 838,087 + DDA3937_RS03780 0.74 -0.8 838,087 + DDA3937_RS03780 0.74 +1.9 838,088 - DDA3937_RS03780 0.74 +0.3 838,088 - DDA3937_RS03780 0.74 +1.2 838,117 + DDA3937_RS03780 0.79 -0.1 838,117 + DDA3937_RS03780 0.79 -1.1 838,118 - DDA3937_RS03780 0.79 +1.3 838,118 - DDA3937_RS03780 0.79 +1.1 838,126 + DDA3937_RS03780 0.80 -1.5 838,126 + DDA3937_RS03780 0.80 -2.5 838,127 - DDA3937_RS03780 0.80 +2.1 838,171 + DDA3937_RS03780 0.87 -0.6 838,172 - DDA3937_RS03780 0.87 -2.4 838,172 - DDA3937_RS03780 0.87 +2.5 838,172 - DDA3937_RS03780 0.87 -0.1 838,173 + DDA3937_RS03780 0.88 -1.1 838,174 - DDA3937_RS03780 0.88 -0.1 838,174 - DDA3937_RS03780 0.88 -3.9 838,208 + -3.7 838,209 - -0.7 838,254 + +0.4 838,274 + +4.2 838,274 + -2.2 838,274 + -0.1 838,274 + -0.1 838,274 + -3.4 838,275 - -2.0 838,275 - -1.3 838,275 - -0.9 838,276 + -2.2 838,276 + -2.7 838,276 + -0.1 838,276 + -0.8 838,276 + -0.2 838,276 + -2.3 838,276 + -1.8 838,276 + -3.2 838,276 + -4.1 838,276 + -2.7 838,276 + -1.3 838,276 + -1.3 838,276 + +1.5 838,276 + -1.2 838,276 + -2.5 838,276 + -3.7 838,277 - -1.1 838,277 - -0.2 838,277 - -3.2 838,277 - -2.8 838,277 - -2.2 838,277 - -0.5 838,277 - +0.4 838,277 - -2.1 838,277 - -1.5 838,277 - -3.2 838,277 - -1.1 838,277 - +0.0 838,277 - +0.3 838,277 - -4.2 838,277 - -2.0 838,305 + -0.5 838,305 + -0.7 838,305 + -0.2 838,306 - -0.8 838,309 + -1.3 838,329 + -2.4 838,329 + -1.2 838,480 + DDA3937_RS03785 0.42 -3.5 838,480 + DDA3937_RS03785 0.42 -4.2 838,480 + DDA3937_RS03785 0.42 -2.6 838,480 + DDA3937_RS03785 0.42 +1.8 838,481 - DDA3937_RS03785 0.42 -0.7 838,481 - DDA3937_RS03785 0.42 -2.4 838,481 - DDA3937_RS03785 0.42 -2.5 838,481 - DDA3937_RS03785 0.42 -2.3 838,481 - DDA3937_RS03785 0.42 +0.2 838,481 - DDA3937_RS03785 0.42 +0.3 838,611 + DDA3937_RS03785 0.74 -1.5 838,642 + DDA3937_RS03785 0.82 -3.2 838,642 + DDA3937_RS03785 0.82 -3.0 838,642 + DDA3937_RS03785 0.82 -2.6 838,642 + DDA3937_RS03785 0.82 -1.8 838,643 - -0.8 838,643 - DDA3937_RS03785 0.82 -2.2 838,643 - DDA3937_RS03785 0.82 -3.0 838,644 + DDA3937_RS03785 0.82 +1.0 838,644 + DDA3937_RS03785 0.82 -3.9 838,645 - DDA3937_RS03785 0.83 -3.4 838,645 - DDA3937_RS03785 0.83 -1.5 838,645 - DDA3937_RS03785 0.83 -1.3 838,645 - DDA3937_RS03785 0.83 -1.1 838,663 + DDA3937_RS03785 0.87 -2.4 838,664 - DDA3937_RS03785 0.87 -1.8 838,664 - -0.1 838,664 - DDA3937_RS03785 0.87 -0.1 838,677 + -0.5 838,678 - -1.2 838,678 - +0.7 838,678 - +0.5 838,685 + -2.1 838,685 + -0.6 838,685 + -1.5 838,685 + +1.1 838,685 + -1.8 838,686 - -1.6 838,686 - -2.2 838,696 + -0.5 838,696 + -0.8 838,697 - -1.5 838,697 - +0.1 838,700 + -2.9 838,700 + -1.3 838,700 + +1.9 838,700 + -2.8 838,700 + -0.5 838,700 + -1.8 838,701 - +0.8 838,701 - +0.9 838,701 - -1.1 838,701 - -2.0 838,701 - -1.6 838,701 - -1.1 838,701 - +1.5 838,701 - -2.9 838,702 + -0.3 838,702 + +0.8 838,702 + -2.4 838,702 + -0.4 838,702 + -0.8 838,702 + -1.3 838,702 + -2.7 838,702 + -0.4 838,703 - -0.9 838,703 - -2.6 838,703 - +0.7 838,703 - +1.2 838,703 - -3.4 838,703 - -2.3 838,703 - -0.2 838,703 - +0.8 838,703 - -2.1 838,703 - -1.3 838,703 - -0.8 838,703 - -0.4 838,703 - -2.0 838,703 - -1.1 838,703 - -3.2 838,703 - +1.1 838,703 - -2.5 838,703 - -2.4 838,703 - -1.8 838,707 - -1.6 838,843 + DDA3937_RS03790 0.12 -0.5 838,843 + DDA3937_RS03790 0.12 -1.3 838,843 + DDA3937_RS03790 0.12 -2.6 838,844 - DDA3937_RS03790 0.12 -2.8 838,844 - DDA3937_RS03790 0.12 +0.2 838,844 - DDA3937_RS03790 0.12 -2.5 838,844 - DDA3937_RS03790 0.12 -0.8 838,844 - DDA3937_RS03790 0.12 -3.4 838,885 + +0.5 838,886 - DDA3937_RS03790 0.23 -1.8 838,929 - DDA3937_RS03790 0.34 -2.9 838,966 + DDA3937_RS03790 0.44 +0.0 838,967 - DDA3937_RS03790 0.44 -1.1 838,967 - DDA3937_RS03790 0.44 -0.6 839,060 + DDA3937_RS03790 0.68 +0.5 839,129 + DDA3937_RS03790 0.86 +1.4 839,129 + DDA3937_RS03790 0.86 -0.7 839,129 + DDA3937_RS03790 0.86 -1.8 839,129 + DDA3937_RS03790 0.86 -0.0 839,130 - DDA3937_RS03790 0.86 -1.6 839,180 + -2.7 839,180 + -0.1 839,181 - -1.8 839,181 - -2.3 839,231 + +0.1 839,232 - -3.3 839,232 - -0.9 839,232 - -0.9 839,232 - +0.0 839,232 - -0.1 839,232 - -2.1 839,235 + +1.5 839,235 + -0.4 839,235 + -0.1 839,236 - -0.7 839,236 - -1.3 839,236 - -2.3 839,236 - -2.1 839,268 + +1.7 839,268 + -2.8 839,268 + -0.3 839,269 - +0.5 839,269 - +0.9 839,296 + -0.5 839,296 + +0.7 839,296 + +0.0 839,297 - -3.0 839,297 - +1.6 839,297 - -1.8 839,297 - -1.1 839,297 - -0.1 839,316 - +1.8 839,325 + -1.8 839,337 - +1.5 839,459 + -2.1 839,459 + +0.2 839,460 - +1.5 839,465 + -1.2 839,465 + +0.2 839,465 + -1.7 839,466 - +2.0 839,466 - +0.9 839,466 - -3.7 839,537 - DDA3937_RS03795 0.18 -1.4 839,618 + +1.5 839,618 + DDA3937_RS03795 0.28 -2.2 839,639 + DDA3937_RS03795 0.30 -3.1 839,639 + DDA3937_RS03795 0.30 -3.1 839,639 + DDA3937_RS03795 0.30 -1.6 839,639 + DDA3937_RS03795 0.30 +1.3 839,639 + DDA3937_RS03795 0.30 -2.7 839,640 - DDA3937_RS03795 0.31 -2.3 839,640 - DDA3937_RS03795 0.31 -0.4 839,697 + DDA3937_RS03795 0.37 +1.2
Or see this region's nucleotide sequence