Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03400

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03390 and DDA3937_RS03395 are separated by 74 nucleotidesDDA3937_RS03395 and DDA3937_RS03400 are separated by 44 nucleotidesDDA3937_RS03400 and DDA3937_RS03405 are separated by 660 nucleotides DDA3937_RS03390: DDA3937_RS03390 - heavy metal sensor histidine kinase, at 741,506 to 742,930 _RS03390 DDA3937_RS03395: DDA3937_RS03395 - methyltransferase, at 743,005 to 743,583 _RS03395 DDA3937_RS03400: DDA3937_RS03400 - hypothetical protein, at 743,628 to 743,852 _RS03400 DDA3937_RS03405: DDA3937_RS03405 - helix-turn-helix transcriptional regulator, at 744,513 to 744,890 _RS03405 Position (kb) 743 744Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 742.749 kb on - strand, within DDA3937_RS03390at 742.791 kb on + strandat 742.876 kb on + strandat 742.877 kb on - strandat 742.928 kb on + strandat 742.934 kb on - strandat 742.967 kb on - strandat 742.970 kb on - strandat 742.970 kb on - strandat 742.970 kb on - strandat 742.970 kb on - strandat 742.970 kb on - strandat 743.004 kb on + strandat 743.005 kb on - strandat 743.025 kb on + strandat 743.065 kb on + strand, within DDA3937_RS03395at 743.066 kb on - strandat 743.079 kb on + strand, within DDA3937_RS03395at 743.100 kb on - strand, within DDA3937_RS03395at 743.110 kb on - strand, within DDA3937_RS03395at 743.166 kb on + strand, within DDA3937_RS03395at 743.166 kb on + strand, within DDA3937_RS03395at 743.218 kb on - strand, within DDA3937_RS03395at 743.257 kb on + strand, within DDA3937_RS03395at 743.257 kb on + strand, within DDA3937_RS03395at 743.265 kb on + strand, within DDA3937_RS03395at 743.266 kb on - strand, within DDA3937_RS03395at 743.346 kb on + strand, within DDA3937_RS03395at 743.404 kb on - strand, within DDA3937_RS03395at 743.451 kb on + strand, within DDA3937_RS03395at 743.470 kb on + strand, within DDA3937_RS03395at 743.471 kb on - strand, within DDA3937_RS03395at 743.471 kb on - strand, within DDA3937_RS03395at 743.471 kb on - strandat 743.471 kb on - strand, within DDA3937_RS03395at 743.472 kb on + strand, within DDA3937_RS03395at 743.473 kb on - strand, within DDA3937_RS03395at 743.473 kb on - strand, within DDA3937_RS03395at 743.473 kb on - strand, within DDA3937_RS03395at 743.492 kb on + strand, within DDA3937_RS03395at 743.492 kb on + strand, within DDA3937_RS03395at 743.524 kb on - strandat 743.557 kb on + strandat 743.597 kb on + strandat 743.598 kb on - strandat 743.613 kb on - strandat 743.635 kb on + strandat 743.636 kb on - strandat 743.636 kb on - strandat 743.639 kb on + strandat 743.640 kb on - strandat 743.644 kb on + strandat 743.646 kb on + strandat 743.646 kb on + strandat 743.646 kb on + strandat 743.647 kb on - strandat 743.647 kb on - strandat 743.723 kb on + strand, within DDA3937_RS03400at 743.771 kb on - strand, within DDA3937_RS03400at 743.771 kb on - strand, within DDA3937_RS03400at 743.771 kb on - strand, within DDA3937_RS03400at 743.868 kb on + strandat 743.949 kb on - strandat 743.972 kb on - strandat 743.974 kb on + strandat 743.975 kb on - strandat 743.975 kb on - strandat 744.050 kb on + strandat 744.051 kb on - strandat 744.051 kb on - strandat 744.203 kb on + strandat 744.293 kb on + strandat 744.294 kb on - strandat 744.308 kb on + strandat 744.309 kb on - strandat 744.318 kb on + strandat 744.318 kb on + strandat 744.319 kb on - strandat 744.319 kb on - strandat 744.319 kb on - strandat 744.369 kb on + strandat 744.370 kb on - strandat 744.370 kb on - strandat 744.400 kb on + strandat 744.400 kb on + strandat 744.400 kb on + strandat 744.401 kb on - strandat 744.424 kb on - strandat 744.450 kb on + strandat 744.489 kb on - strandat 744.531 kb on + strandat 744.531 kb on + strandat 744.531 kb on + strandat 744.532 kb on - strandat 744.532 kb on - strandat 744.532 kb on - strandat 744.532 kb on - strandat 744.532 kb on - strandat 744.555 kb on - strand, within DDA3937_RS03405at 744.555 kb on - strand, within DDA3937_RS03405at 744.555 kb on - strand, within DDA3937_RS03405at 744.578 kb on + strand, within DDA3937_RS03405at 744.629 kb on + strand, within DDA3937_RS03405at 744.732 kb on - strand, within DDA3937_RS03405at 744.753 kb on + strand, within DDA3937_RS03405at 744.754 kb on - strand, within DDA3937_RS03405at 744.754 kb on - strand, within DDA3937_RS03405at 744.762 kb on - strand, within DDA3937_RS03405at 744.794 kb on - strand, within DDA3937_RS03405at 744.794 kb on - strand, within DDA3937_RS03405

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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742,749 - DDA3937_RS03390 0.87 -0.6
742,791 + -1.3
742,876 + -3.3
742,877 - -1.7
742,928 + +0.3
742,934 - -1.5
742,967 - -2.4
742,970 - -2.3
742,970 - -2.1
742,970 - -1.6
742,970 - -1.6
742,970 - -2.4
743,004 + -1.4
743,005 - +1.0
743,025 + +1.1
743,065 + DDA3937_RS03395 0.10 +0.7
743,066 - +1.0
743,079 + DDA3937_RS03395 0.13 -1.2
743,100 - DDA3937_RS03395 0.16 +0.1
743,110 - DDA3937_RS03395 0.18 -1.4
743,166 + DDA3937_RS03395 0.28 +1.7
743,166 + DDA3937_RS03395 0.28 +1.4
743,218 - DDA3937_RS03395 0.37 +2.0
743,257 + DDA3937_RS03395 0.44 +1.3
743,257 + DDA3937_RS03395 0.44 +1.3
743,265 + DDA3937_RS03395 0.45 +2.1
743,266 - DDA3937_RS03395 0.45 +0.2
743,346 + DDA3937_RS03395 0.59 -2.6
743,404 - DDA3937_RS03395 0.69 -1.6
743,451 + DDA3937_RS03395 0.77 -3.3
743,470 + DDA3937_RS03395 0.80 +0.4
743,471 - DDA3937_RS03395 0.80 -1.7
743,471 - DDA3937_RS03395 0.80 -0.9
743,471 - -0.0
743,471 - DDA3937_RS03395 0.80 -1.8
743,472 + DDA3937_RS03395 0.81 -1.6
743,473 - DDA3937_RS03395 0.81 -1.4
743,473 - DDA3937_RS03395 0.81 +0.6
743,473 - DDA3937_RS03395 0.81 +0.4
743,492 + DDA3937_RS03395 0.84 +0.6
743,492 + DDA3937_RS03395 0.84 -0.8
743,524 - +0.6
743,557 + +0.2
743,597 + -1.6
743,598 - -1.8
743,613 - +0.6
743,635 + -1.3
743,636 - -0.8
743,636 - -3.0
743,639 + +0.1
743,640 - +1.0
743,644 + +0.4
743,646 + +2.0
743,646 + -2.4
743,646 + -2.0
743,647 - -3.9
743,647 - +0.6
743,723 + DDA3937_RS03400 0.42 -1.6
743,771 - DDA3937_RS03400 0.64 -0.8
743,771 - DDA3937_RS03400 0.64 -2.9
743,771 - DDA3937_RS03400 0.64 -1.0
743,868 + -0.3
743,949 - -1.0
743,972 - -2.1
743,974 + -2.0
743,975 - +1.3
743,975 - -2.7
744,050 + +0.7
744,051 - +1.1
744,051 - -0.3
744,203 + -1.4
744,293 + +3.1
744,294 - -0.0
744,308 + -3.1
744,309 - -1.9
744,318 + -0.9
744,318 + +0.1
744,319 - -1.2
744,319 - -3.6
744,319 - -2.8
744,369 + +0.5
744,370 - -2.2
744,370 - -3.0
744,400 + -0.3
744,400 + +0.2
744,400 + +1.0
744,401 - -1.3
744,424 - -2.0
744,450 + +1.8
744,489 - -1.4
744,531 + -0.8
744,531 + +0.6
744,531 + -1.8
744,532 - -4.3
744,532 - -2.7
744,532 - +1.2
744,532 - -0.2
744,532 - +2.2
744,555 - DDA3937_RS03405 0.11 +4.4
744,555 - DDA3937_RS03405 0.11 -0.5
744,555 - DDA3937_RS03405 0.11 -0.1
744,578 + DDA3937_RS03405 0.17 -3.0
744,629 + DDA3937_RS03405 0.31 +3.0
744,732 - DDA3937_RS03405 0.58 +0.1
744,753 + DDA3937_RS03405 0.63 -2.1
744,754 - DDA3937_RS03405 0.64 -3.0
744,754 - DDA3937_RS03405 0.64 -0.5
744,762 - DDA3937_RS03405 0.66 -2.7
744,794 - DDA3937_RS03405 0.74 +1.8
744,794 - DDA3937_RS03405 0.74 -2.5

Or see this region's nucleotide sequence