Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03325

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03320 and DDA3937_RS03325 are separated by 83 nucleotidesDDA3937_RS03325 and DDA3937_RS03330 are separated by 10 nucleotides DDA3937_RS03320: DDA3937_RS03320 - lysine--tRNA ligase, at 725,336 to 726,853 _RS03320 DDA3937_RS03325: DDA3937_RS03325 - hypothetical protein, at 726,937 to 727,998 _RS03325 DDA3937_RS03330: DDA3937_RS03330 - GMC family oxidoreductase, at 728,009 to 729,604 _RS03330 Position (kb) 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 726.851 kb on + strandat 726.852 kb on - strandat 726.852 kb on - strandat 727.012 kb on - strandat 727.012 kb on - strandat 727.061 kb on + strand, within DDA3937_RS03325at 727.061 kb on + strand, within DDA3937_RS03325at 727.062 kb on - strand, within DDA3937_RS03325at 727.062 kb on - strand, within DDA3937_RS03325at 727.118 kb on + strand, within DDA3937_RS03325at 727.119 kb on - strand, within DDA3937_RS03325at 727.170 kb on - strand, within DDA3937_RS03325at 727.275 kb on - strand, within DDA3937_RS03325at 727.286 kb on + strand, within DDA3937_RS03325at 727.286 kb on + strand, within DDA3937_RS03325at 727.287 kb on - strand, within DDA3937_RS03325at 727.287 kb on - strandat 727.287 kb on - strand, within DDA3937_RS03325at 727.287 kb on - strand, within DDA3937_RS03325at 727.287 kb on - strand, within DDA3937_RS03325at 727.355 kb on + strand, within DDA3937_RS03325at 727.356 kb on - strandat 727.395 kb on + strand, within DDA3937_RS03325at 727.395 kb on + strand, within DDA3937_RS03325at 727.395 kb on + strand, within DDA3937_RS03325at 727.396 kb on - strand, within DDA3937_RS03325at 727.396 kb on - strand, within DDA3937_RS03325at 727.398 kb on + strand, within DDA3937_RS03325at 727.398 kb on + strand, within DDA3937_RS03325at 727.398 kb on + strand, within DDA3937_RS03325at 727.399 kb on - strand, within DDA3937_RS03325at 727.399 kb on - strand, within DDA3937_RS03325at 727.438 kb on - strand, within DDA3937_RS03325at 727.463 kb on + strand, within DDA3937_RS03325at 727.464 kb on - strand, within DDA3937_RS03325at 727.517 kb on + strand, within DDA3937_RS03325at 727.518 kb on - strand, within DDA3937_RS03325at 727.518 kb on - strand, within DDA3937_RS03325at 727.518 kb on - strand, within DDA3937_RS03325at 727.521 kb on + strand, within DDA3937_RS03325at 727.521 kb on + strand, within DDA3937_RS03325at 727.522 kb on - strand, within DDA3937_RS03325at 727.522 kb on - strand, within DDA3937_RS03325at 727.522 kb on - strand, within DDA3937_RS03325at 727.522 kb on - strand, within DDA3937_RS03325at 727.522 kb on - strand, within DDA3937_RS03325at 727.585 kb on + strand, within DDA3937_RS03325at 727.585 kb on + strand, within DDA3937_RS03325at 727.585 kb on + strand, within DDA3937_RS03325at 727.585 kb on + strand, within DDA3937_RS03325at 727.585 kb on + strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.586 kb on - strand, within DDA3937_RS03325at 727.693 kb on + strand, within DDA3937_RS03325at 727.693 kb on + strand, within DDA3937_RS03325at 727.693 kb on + strand, within DDA3937_RS03325at 727.694 kb on - strand, within DDA3937_RS03325at 727.694 kb on - strand, within DDA3937_RS03325at 727.694 kb on - strand, within DDA3937_RS03325at 727.694 kb on - strand, within DDA3937_RS03325at 727.917 kb on - strandat 727.917 kb on - strandat 728.010 kb on + strandat 728.010 kb on + strandat 728.118 kb on + strandat 728.118 kb on + strandat 728.118 kb on + strandat 728.118 kb on + strandat 728.118 kb on + strandat 728.119 kb on - strandat 728.119 kb on - strandat 728.119 kb on - strandat 728.119 kb on - strandat 728.119 kb on - strandat 728.375 kb on - strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strand, within DDA3937_RS03330at 728.448 kb on + strandat 728.449 kb on - strand, within DDA3937_RS03330at 728.449 kb on - strand, within DDA3937_RS03330at 728.449 kb on - strand, within DDA3937_RS03330at 728.449 kb on - strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.653 kb on - strand, within DDA3937_RS03330at 728.653 kb on - strand, within DDA3937_RS03330at 728.653 kb on - strand, within DDA3937_RS03330at 728.663 kb on - strand, within DDA3937_RS03330at 728.663 kb on - strand, within DDA3937_RS03330at 728.815 kb on + strand, within DDA3937_RS03330at 728.890 kb on + strand, within DDA3937_RS03330at 728.924 kb on - strand, within DDA3937_RS03330at 728.970 kb on + strand, within DDA3937_RS03330at 728.971 kb on - strand, within DDA3937_RS03330

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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726,851 + -1.2
726,852 - +0.2
726,852 - +0.6
727,012 - -1.2
727,012 - +1.6
727,061 + DDA3937_RS03325 0.12 +1.3
727,061 + DDA3937_RS03325 0.12 -2.2
727,062 - DDA3937_RS03325 0.12 -2.4
727,062 - DDA3937_RS03325 0.12 +1.1
727,118 + DDA3937_RS03325 0.17 +0.2
727,119 - DDA3937_RS03325 0.17 -1.7
727,170 - DDA3937_RS03325 0.22 +1.2
727,275 - DDA3937_RS03325 0.32 +0.6
727,286 + DDA3937_RS03325 0.33 -2.4
727,286 + DDA3937_RS03325 0.33 +0.2
727,287 - DDA3937_RS03325 0.33 -0.5
727,287 - -0.0
727,287 - DDA3937_RS03325 0.33 -0.0
727,287 - DDA3937_RS03325 0.33 -2.0
727,287 - DDA3937_RS03325 0.33 -1.0
727,355 + DDA3937_RS03325 0.39 -2.5
727,356 - -0.4
727,395 + DDA3937_RS03325 0.43 +0.2
727,395 + DDA3937_RS03325 0.43 +1.0
727,395 + DDA3937_RS03325 0.43 -2.2
727,396 - DDA3937_RS03325 0.43 -1.2
727,396 - DDA3937_RS03325 0.43 -1.4
727,398 + DDA3937_RS03325 0.43 +2.6
727,398 + DDA3937_RS03325 0.43 +0.4
727,398 + DDA3937_RS03325 0.43 -0.9
727,399 - DDA3937_RS03325 0.44 +0.1
727,399 - DDA3937_RS03325 0.44 -1.7
727,438 - DDA3937_RS03325 0.47 -0.7
727,463 + DDA3937_RS03325 0.50 -2.3
727,464 - DDA3937_RS03325 0.50 -0.4
727,517 + DDA3937_RS03325 0.55 -1.0
727,518 - DDA3937_RS03325 0.55 -1.0
727,518 - DDA3937_RS03325 0.55 -2.0
727,518 - DDA3937_RS03325 0.55 -2.0
727,521 + DDA3937_RS03325 0.55 +2.4
727,521 + DDA3937_RS03325 0.55 -0.2
727,522 - DDA3937_RS03325 0.55 +2.0
727,522 - DDA3937_RS03325 0.55 -0.6
727,522 - DDA3937_RS03325 0.55 -0.4
727,522 - DDA3937_RS03325 0.55 +0.3
727,522 - DDA3937_RS03325 0.55 -1.7
727,585 + DDA3937_RS03325 0.61 -3.7
727,585 + DDA3937_RS03325 0.61 -1.9
727,585 + DDA3937_RS03325 0.61 -1.2
727,585 + DDA3937_RS03325 0.61 +2.4
727,585 + DDA3937_RS03325 0.61 -1.9
727,586 - DDA3937_RS03325 0.61 -2.4
727,586 - DDA3937_RS03325 0.61 +0.8
727,586 - DDA3937_RS03325 0.61 +0.3
727,586 - DDA3937_RS03325 0.61 -0.6
727,586 - DDA3937_RS03325 0.61 -2.2
727,586 - DDA3937_RS03325 0.61 -0.1
727,586 - DDA3937_RS03325 0.61 +1.6
727,586 - DDA3937_RS03325 0.61 +1.1
727,693 + DDA3937_RS03325 0.71 -2.5
727,693 + DDA3937_RS03325 0.71 -3.3
727,693 + DDA3937_RS03325 0.71 -1.8
727,694 - DDA3937_RS03325 0.71 -3.5
727,694 - DDA3937_RS03325 0.71 -0.7
727,694 - DDA3937_RS03325 0.71 -2.2
727,694 - DDA3937_RS03325 0.71 -2.0
727,917 - +0.1
727,917 - -0.1
728,010 + +1.8
728,010 + -0.0
728,118 + -1.8
728,118 + -2.5
728,118 + -2.7
728,118 + +1.2
728,118 + +0.2
728,119 - -0.7
728,119 - +0.6
728,119 - -3.3
728,119 - -2.9
728,119 - -2.5
728,375 - DDA3937_RS03330 0.23 -2.0
728,448 + DDA3937_RS03330 0.28 -1.9
728,448 + DDA3937_RS03330 0.28 +0.4
728,448 + DDA3937_RS03330 0.28 -2.1
728,448 + DDA3937_RS03330 0.28 -0.7
728,448 + DDA3937_RS03330 0.28 -1.7
728,448 + DDA3937_RS03330 0.28 +1.9
728,448 + DDA3937_RS03330 0.28 -2.9
728,448 + DDA3937_RS03330 0.28 +1.1
728,448 + DDA3937_RS03330 0.28 -0.2
728,448 + DDA3937_RS03330 0.28 -0.7
728,448 + -0.0
728,449 - DDA3937_RS03330 0.28 -1.7
728,449 - DDA3937_RS03330 0.28 -2.2
728,449 - DDA3937_RS03330 0.28 -0.7
728,449 - DDA3937_RS03330 0.28 -1.5
728,652 + DDA3937_RS03330 0.40 -2.3
728,652 + DDA3937_RS03330 0.40 -2.3
728,652 + DDA3937_RS03330 0.40 -1.9
728,652 + DDA3937_RS03330 0.40 +1.5
728,653 - DDA3937_RS03330 0.40 -0.9
728,653 - DDA3937_RS03330 0.40 -0.4
728,653 - DDA3937_RS03330 0.40 -1.2
728,663 - DDA3937_RS03330 0.41 -1.2
728,663 - DDA3937_RS03330 0.41 -0.1
728,815 + DDA3937_RS03330 0.51 +0.5
728,890 + DDA3937_RS03330 0.55 +1.0
728,924 - DDA3937_RS03330 0.57 -1.4
728,970 + DDA3937_RS03330 0.60 +0.9
728,971 - DDA3937_RS03330 0.60 +1.1

Or see this region's nucleotide sequence