Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02870

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS02865 and DDA3937_RS02870 overlap by 1 nucleotidesDDA3937_RS02870 and DDA3937_RS02875 overlap by 1 nucleotides DDA3937_RS02865: DDA3937_RS02865 - transcriptional regulator UhpA, at 632,074 to 632,664 _RS02865 DDA3937_RS02870: DDA3937_RS02870 - signal transduction histidine-protein kinase/phosphatase UhpB, at 632,664 to 634,175 _RS02870 DDA3937_RS02875: DDA3937_RS02875 - MFS transporter, at 634,175 to 635,536 _RS02875 Position (kb) 632 633 634 635Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 631.911 kb on + strandat 631.911 kb on + strandat 631.911 kb on + strandat 631.911 kb on + strandat 631.911 kb on + strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.912 kb on - strandat 631.915 kb on + strandat 631.915 kb on + strandat 631.915 kb on + strandat 631.915 kb on + strandat 631.974 kb on + strandat 631.975 kb on - strandat 632.038 kb on + strandat 632.038 kb on + strandat 632.039 kb on - strandat 632.044 kb on - strandat 632.044 kb on - strandat 632.044 kb on - strandat 632.106 kb on + strandat 632.106 kb on + strandat 632.106 kb on + strandat 632.106 kb on + strandat 632.106 kb on + strandat 632.107 kb on - strandat 632.107 kb on - strandat 632.107 kb on - strandat 632.107 kb on - strandat 632.107 kb on - strandat 632.226 kb on + strand, within DDA3937_RS02865at 632.226 kb on + strand, within DDA3937_RS02865at 632.226 kb on + strand, within DDA3937_RS02865at 632.226 kb on + strand, within DDA3937_RS02865at 632.226 kb on + strand, within DDA3937_RS02865at 632.227 kb on - strand, within DDA3937_RS02865at 632.301 kb on + strand, within DDA3937_RS02865at 632.301 kb on + strand, within DDA3937_RS02865at 632.301 kb on + strand, within DDA3937_RS02865at 632.302 kb on - strand, within DDA3937_RS02865at 632.302 kb on - strand, within DDA3937_RS02865at 632.302 kb on - strand, within DDA3937_RS02865at 632.435 kb on - strand, within DDA3937_RS02865at 632.435 kb on - strand, within DDA3937_RS02865at 632.580 kb on - strand, within DDA3937_RS02865at 632.712 kb on - strandat 632.821 kb on + strand, within DDA3937_RS02870at 632.821 kb on + strand, within DDA3937_RS02870at 632.821 kb on + strand, within DDA3937_RS02870at 632.822 kb on - strand, within DDA3937_RS02870at 632.822 kb on - strand, within DDA3937_RS02870at 632.822 kb on - strand, within DDA3937_RS02870at 633.071 kb on + strand, within DDA3937_RS02870at 633.071 kb on + strand, within DDA3937_RS02870at 633.071 kb on + strand, within DDA3937_RS02870at 633.072 kb on - strand, within DDA3937_RS02870at 633.077 kb on + strand, within DDA3937_RS02870at 633.078 kb on - strand, within DDA3937_RS02870at 633.144 kb on + strand, within DDA3937_RS02870at 633.144 kb on + strand, within DDA3937_RS02870at 633.145 kb on - strand, within DDA3937_RS02870at 633.145 kb on - strand, within DDA3937_RS02870at 633.145 kb on - strand, within DDA3937_RS02870at 633.228 kb on + strand, within DDA3937_RS02870at 633.229 kb on - strand, within DDA3937_RS02870at 633.340 kb on - strand, within DDA3937_RS02870at 633.427 kb on + strand, within DDA3937_RS02870at 633.427 kb on + strand, within DDA3937_RS02870at 633.427 kb on + strand, within DDA3937_RS02870at 633.427 kb on + strand, within DDA3937_RS02870at 633.428 kb on - strand, within DDA3937_RS02870at 633.428 kb on - strand, within DDA3937_RS02870at 633.428 kb on - strand, within DDA3937_RS02870at 633.428 kb on - strand, within DDA3937_RS02870at 633.430 kb on + strand, within DDA3937_RS02870at 633.479 kb on + strand, within DDA3937_RS02870at 633.501 kb on - strand, within DDA3937_RS02870at 633.501 kb on - strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.620 kb on + strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.621 kb on - strand, within DDA3937_RS02870at 633.623 kb on + strand, within DDA3937_RS02870at 633.726 kb on + strand, within DDA3937_RS02870at 633.726 kb on + strand, within DDA3937_RS02870at 633.726 kb on + strand, within DDA3937_RS02870at 633.726 kb on + strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.727 kb on - strand, within DDA3937_RS02870at 633.840 kb on - strand, within DDA3937_RS02870at 633.932 kb on + strand, within DDA3937_RS02870at 633.932 kb on + strand, within DDA3937_RS02870at 633.932 kb on + strand, within DDA3937_RS02870at 633.932 kb on + strandat 633.933 kb on - strand, within DDA3937_RS02870at 633.935 kb on + strand, within DDA3937_RS02870at 633.935 kb on + strand, within DDA3937_RS02870at 633.935 kb on + strand, within DDA3937_RS02870at 633.936 kb on - strand, within DDA3937_RS02870at 633.936 kb on - strand, within DDA3937_RS02870at 633.936 kb on - strand, within DDA3937_RS02870at 634.067 kb on - strandat 634.067 kb on - strandat 634.067 kb on - strandat 634.190 kb on - strandat 634.204 kb on + strandat 634.205 kb on - strandat 634.205 kb on - strandat 634.274 kb on + strandat 634.295 kb on - strandat 634.303 kb on + strandat 634.304 kb on - strandat 634.311 kb on - strandat 634.320 kb on - strand, within DDA3937_RS02875at 634.331 kb on + strand, within DDA3937_RS02875at 634.331 kb on + strand, within DDA3937_RS02875at 634.331 kb on + strand, within DDA3937_RS02875at 634.372 kb on + strand, within DDA3937_RS02875at 634.397 kb on - strand, within DDA3937_RS02875at 634.428 kb on - strand, within DDA3937_RS02875at 634.428 kb on - strand, within DDA3937_RS02875at 634.436 kb on + strand, within DDA3937_RS02875at 634.436 kb on + strand, within DDA3937_RS02875at 634.436 kb on + strand, within DDA3937_RS02875at 634.437 kb on - strand, within DDA3937_RS02875at 634.437 kb on - strand, within DDA3937_RS02875at 634.437 kb on - strand, within DDA3937_RS02875at 634.437 kb on - strand, within DDA3937_RS02875at 634.490 kb on + strand, within DDA3937_RS02875at 634.491 kb on - strand, within DDA3937_RS02875at 634.531 kb on + strand, within DDA3937_RS02875at 634.694 kb on - strand, within DDA3937_RS02875at 634.807 kb on - strand, within DDA3937_RS02875at 634.933 kb on + strand, within DDA3937_RS02875at 634.933 kb on + strand, within DDA3937_RS02875at 634.933 kb on + strand, within DDA3937_RS02875at 634.934 kb on - strand, within DDA3937_RS02875at 634.934 kb on - strand, within DDA3937_RS02875at 634.934 kb on - strand, within DDA3937_RS02875at 634.934 kb on - strand, within DDA3937_RS02875at 634.934 kb on - strand, within DDA3937_RS02875at 634.934 kb on - strand, within DDA3937_RS02875at 634.937 kb on + strand, within DDA3937_RS02875at 634.937 kb on + strand, within DDA3937_RS02875at 634.937 kb on + strand, within DDA3937_RS02875at 634.938 kb on - strandat 634.938 kb on - strand, within DDA3937_RS02875at 634.938 kb on - strand, within DDA3937_RS02875at 634.938 kb on - strand, within DDA3937_RS02875at 634.938 kb on - strand, within DDA3937_RS02875at 634.946 kb on - strand, within DDA3937_RS02875at 634.946 kb on - strand, within DDA3937_RS02875at 634.946 kb on - strand, within DDA3937_RS02875at 634.955 kb on + strand, within DDA3937_RS02875at 634.955 kb on + strand, within DDA3937_RS02875at 634.956 kb on - strand, within DDA3937_RS02875at 634.956 kb on - strand, within DDA3937_RS02875at 634.956 kb on - strand, within DDA3937_RS02875at 634.956 kb on - strand, within DDA3937_RS02875at 634.956 kb on - strand, within DDA3937_RS02875at 634.979 kb on + strandat 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.979 kb on + strand, within DDA3937_RS02875at 634.980 kb on - strand, within DDA3937_RS02875at 634.980 kb on - strand, within DDA3937_RS02875at 634.980 kb on - strand, within DDA3937_RS02875at 634.980 kb on - strand, within DDA3937_RS02875at 634.980 kb on - strand, within DDA3937_RS02875at 634.980 kb on - strand, within DDA3937_RS02875at 634.991 kb on + strand, within DDA3937_RS02875at 634.991 kb on + strand, within DDA3937_RS02875at 634.991 kb on + strand, within DDA3937_RS02875at 634.991 kb on + strand, within DDA3937_RS02875at 634.991 kb on + strand, within DDA3937_RS02875at 634.992 kb on - strand, within DDA3937_RS02875at 634.992 kb on - strand, within DDA3937_RS02875at 634.992 kb on - strand, within DDA3937_RS02875at 635.030 kb on + strand, within DDA3937_RS02875at 635.030 kb on + strand, within DDA3937_RS02875at 635.030 kb on + strand, within DDA3937_RS02875at 635.031 kb on - strand, within DDA3937_RS02875at 635.031 kb on - strand, within DDA3937_RS02875at 635.031 kb on - strand, within DDA3937_RS02875at 635.031 kb on - strand, within DDA3937_RS02875at 635.031 kb on - strand, within DDA3937_RS02875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
631,911 + -1.9
631,911 + +1.4
631,911 + -0.1
631,911 + +0.4
631,911 + +0.7
631,912 - -1.1
631,912 - +2.1
631,912 - -1.4
631,912 - +0.4
631,912 - -2.4
631,912 - -0.7
631,912 - -1.9
631,912 - -0.2
631,915 + -2.0
631,915 + -0.4
631,915 + -0.2
631,915 + -0.4
631,974 + +1.1
631,975 - +0.5
632,038 + -2.2
632,038 + -1.9
632,039 - -2.9
632,044 - -2.0
632,044 - -0.9
632,044 - -1.1
632,106 + -1.2
632,106 + -0.4
632,106 + -1.2
632,106 + +0.6
632,106 + +0.9
632,107 - -1.0
632,107 - -4.0
632,107 - -2.0
632,107 - -1.3
632,107 - -2.1
632,226 + DDA3937_RS02865 0.26 -2.6
632,226 + DDA3937_RS02865 0.26 -1.4
632,226 + DDA3937_RS02865 0.26 -1.1
632,226 + DDA3937_RS02865 0.26 -2.4
632,226 + DDA3937_RS02865 0.26 -1.2
632,227 - DDA3937_RS02865 0.26 -0.3
632,301 + DDA3937_RS02865 0.38 -1.8
632,301 + DDA3937_RS02865 0.38 -0.8
632,301 + DDA3937_RS02865 0.38 -2.7
632,302 - DDA3937_RS02865 0.39 -1.7
632,302 - DDA3937_RS02865 0.39 +0.6
632,302 - DDA3937_RS02865 0.39 -1.7
632,435 - DDA3937_RS02865 0.61 -2.4
632,435 - DDA3937_RS02865 0.61 -0.3
632,580 - DDA3937_RS02865 0.86 -2.5
632,712 - +0.1
632,821 + DDA3937_RS02870 0.10 -0.3
632,821 + DDA3937_RS02870 0.10 +3.0
632,821 + DDA3937_RS02870 0.10 -1.7
632,822 - DDA3937_RS02870 0.10 -2.6
632,822 - DDA3937_RS02870 0.10 -0.6
632,822 - DDA3937_RS02870 0.10 -2.7
633,071 + DDA3937_RS02870 0.27 -1.0
633,071 + DDA3937_RS02870 0.27 -3.2
633,071 + DDA3937_RS02870 0.27 -2.4
633,072 - DDA3937_RS02870 0.27 -1.1
633,077 + DDA3937_RS02870 0.27 -2.5
633,078 - DDA3937_RS02870 0.27 -4.1
633,144 + DDA3937_RS02870 0.32 -1.6
633,144 + DDA3937_RS02870 0.32 -1.5
633,145 - DDA3937_RS02870 0.32 +0.6
633,145 - DDA3937_RS02870 0.32 -3.1
633,145 - DDA3937_RS02870 0.32 -1.4
633,228 + DDA3937_RS02870 0.37 -0.7
633,229 - DDA3937_RS02870 0.37 -3.2
633,340 - DDA3937_RS02870 0.45 -1.7
633,427 + DDA3937_RS02870 0.50 -0.8
633,427 + DDA3937_RS02870 0.50 -1.6
633,427 + DDA3937_RS02870 0.50 -2.1
633,427 + DDA3937_RS02870 0.50 -1.2
633,428 - DDA3937_RS02870 0.51 +0.4
633,428 - DDA3937_RS02870 0.51 -2.0
633,428 - DDA3937_RS02870 0.51 -1.6
633,428 - DDA3937_RS02870 0.51 +1.3
633,430 + DDA3937_RS02870 0.51 -0.2
633,479 + DDA3937_RS02870 0.54 -0.6
633,501 - DDA3937_RS02870 0.55 +1.1
633,501 - DDA3937_RS02870 0.55 -2.5
633,620 + DDA3937_RS02870 0.63 -2.6
633,620 + DDA3937_RS02870 0.63 -1.4
633,620 + DDA3937_RS02870 0.63 -0.8
633,620 + DDA3937_RS02870 0.63 -2.7
633,620 + DDA3937_RS02870 0.63 -1.2
633,620 + DDA3937_RS02870 0.63 -0.3
633,620 + DDA3937_RS02870 0.63 -2.6
633,621 - DDA3937_RS02870 0.63 -1.0
633,621 - DDA3937_RS02870 0.63 -0.5
633,621 - DDA3937_RS02870 0.63 -1.9
633,621 - DDA3937_RS02870 0.63 -0.5
633,621 - DDA3937_RS02870 0.63 -1.5
633,621 - DDA3937_RS02870 0.63 -0.7
633,621 - DDA3937_RS02870 0.63 -0.2
633,623 + DDA3937_RS02870 0.63 +1.6
633,726 + DDA3937_RS02870 0.70 -0.8
633,726 + DDA3937_RS02870 0.70 -2.7
633,726 + DDA3937_RS02870 0.70 -3.5
633,726 + DDA3937_RS02870 0.70 +0.7
633,727 - DDA3937_RS02870 0.70 +1.5
633,727 - DDA3937_RS02870 0.70 +0.6
633,727 - DDA3937_RS02870 0.70 -2.9
633,727 - DDA3937_RS02870 0.70 +0.4
633,727 - DDA3937_RS02870 0.70 -0.9
633,727 - DDA3937_RS02870 0.70 -0.9
633,727 - DDA3937_RS02870 0.70 -1.7
633,840 - DDA3937_RS02870 0.78 -1.6
633,932 + DDA3937_RS02870 0.84 +0.0
633,932 + DDA3937_RS02870 0.84 -0.4
633,932 + DDA3937_RS02870 0.84 -0.5
633,932 + +2.2
633,933 - DDA3937_RS02870 0.84 +0.0
633,935 + DDA3937_RS02870 0.84 -0.7
633,935 + DDA3937_RS02870 0.84 -0.8
633,935 + DDA3937_RS02870 0.84 -0.7
633,936 - DDA3937_RS02870 0.84 -0.8
633,936 - DDA3937_RS02870 0.84 -2.3
633,936 - DDA3937_RS02870 0.84 +1.7
634,067 - -2.4
634,067 - -1.8
634,067 - +0.6
634,190 - -1.1
634,204 + -2.3
634,205 - -1.5
634,205 - -0.3
634,274 + +0.4
634,295 - -1.1
634,303 + +0.5
634,304 - +2.4
634,311 - +0.6
634,320 - DDA3937_RS02875 0.11 -1.1
634,331 + DDA3937_RS02875 0.11 +0.1
634,331 + DDA3937_RS02875 0.11 -1.0
634,331 + DDA3937_RS02875 0.11 -0.2
634,372 + DDA3937_RS02875 0.14 -2.1
634,397 - DDA3937_RS02875 0.16 -0.7
634,428 - DDA3937_RS02875 0.19 -2.7
634,428 - DDA3937_RS02875 0.19 -1.5
634,436 + DDA3937_RS02875 0.19 +0.8
634,436 + DDA3937_RS02875 0.19 +0.6
634,436 + DDA3937_RS02875 0.19 -1.0
634,437 - DDA3937_RS02875 0.19 +0.7
634,437 - DDA3937_RS02875 0.19 +0.4
634,437 - DDA3937_RS02875 0.19 +1.2
634,437 - DDA3937_RS02875 0.19 -2.1
634,490 + DDA3937_RS02875 0.23 -0.9
634,491 - DDA3937_RS02875 0.23 -0.2
634,531 + DDA3937_RS02875 0.26 -3.1
634,694 - DDA3937_RS02875 0.38 +1.5
634,807 - DDA3937_RS02875 0.46 -1.8
634,933 + DDA3937_RS02875 0.56 -4.5
634,933 + DDA3937_RS02875 0.56 -1.6
634,933 + DDA3937_RS02875 0.56 -1.2
634,934 - DDA3937_RS02875 0.56 -0.6
634,934 - DDA3937_RS02875 0.56 +0.0
634,934 - DDA3937_RS02875 0.56 -1.4
634,934 - DDA3937_RS02875 0.56 -1.2
634,934 - DDA3937_RS02875 0.56 -0.5
634,934 - DDA3937_RS02875 0.56 +0.2
634,937 + DDA3937_RS02875 0.56 -0.1
634,937 + DDA3937_RS02875 0.56 -1.4
634,937 + DDA3937_RS02875 0.56 -0.8
634,938 - +0.6
634,938 - DDA3937_RS02875 0.56 -1.2
634,938 - DDA3937_RS02875 0.56 -1.1
634,938 - DDA3937_RS02875 0.56 +3.2
634,938 - DDA3937_RS02875 0.56 -1.9
634,946 - DDA3937_RS02875 0.57 +0.0
634,946 - DDA3937_RS02875 0.57 -1.1
634,946 - DDA3937_RS02875 0.57 -2.7
634,955 + DDA3937_RS02875 0.57 -3.1
634,955 + DDA3937_RS02875 0.57 +1.2
634,956 - DDA3937_RS02875 0.57 +0.3
634,956 - DDA3937_RS02875 0.57 -2.0
634,956 - DDA3937_RS02875 0.57 -0.9
634,956 - DDA3937_RS02875 0.57 +1.4
634,956 - DDA3937_RS02875 0.57 -0.7
634,979 + +0.6
634,979 + DDA3937_RS02875 0.59 -1.0
634,979 + DDA3937_RS02875 0.59 -0.6
634,979 + DDA3937_RS02875 0.59 -0.9
634,979 + DDA3937_RS02875 0.59 -0.6
634,979 + DDA3937_RS02875 0.59 -2.6
634,979 + DDA3937_RS02875 0.59 +0.1
634,979 + DDA3937_RS02875 0.59 -1.9
634,979 + DDA3937_RS02875 0.59 -0.7
634,980 - DDA3937_RS02875 0.59 +0.4
634,980 - DDA3937_RS02875 0.59 -2.2
634,980 - DDA3937_RS02875 0.59 -3.1
634,980 - DDA3937_RS02875 0.59 -2.9
634,980 - DDA3937_RS02875 0.59 +0.4
634,980 - DDA3937_RS02875 0.59 -0.1
634,991 + DDA3937_RS02875 0.60 +1.4
634,991 + DDA3937_RS02875 0.60 -1.8
634,991 + DDA3937_RS02875 0.60 -1.9
634,991 + DDA3937_RS02875 0.60 -1.6
634,991 + DDA3937_RS02875 0.60 -0.5
634,992 - DDA3937_RS02875 0.60 -2.3
634,992 - DDA3937_RS02875 0.60 -1.9
634,992 - DDA3937_RS02875 0.60 +0.9
635,030 + DDA3937_RS02875 0.63 -1.6
635,030 + DDA3937_RS02875 0.63 -2.2
635,030 + DDA3937_RS02875 0.63 -1.9
635,031 - DDA3937_RS02875 0.63 -1.2
635,031 - DDA3937_RS02875 0.63 -1.0
635,031 - DDA3937_RS02875 0.63 -0.7
635,031 - DDA3937_RS02875 0.63 -1.4
635,031 - DDA3937_RS02875 0.63 -0.7

Or see this region's nucleotide sequence