Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02860 and DDA3937_RS02865 are separated by 591 nucleotides DDA3937_RS02865 and DDA3937_RS02870 overlap by 1 nucleotides
DDA3937_RS02860: DDA3937_RS02860 - pectate lyase, at 630,535 to 631,482
_RS02860
DDA3937_RS02865: DDA3937_RS02865 - transcriptional regulator UhpA, at 632,074 to 632,664
_RS02865
DDA3937_RS02870: DDA3937_RS02870 - signal transduction histidine-protein kinase/phosphatase UhpB, at 632,664 to 634,175
_RS02870
Position (kb) 632
633 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.085 kb on - strand, within DDA3937_RS02860 at 631.108 kb on - strand, within DDA3937_RS02860 at 631.120 kb on + strand, within DDA3937_RS02860 at 631.120 kb on + strand, within DDA3937_RS02860 at 631.121 kb on - strand, within DDA3937_RS02860 at 631.121 kb on - strand, within DDA3937_RS02860 at 631.131 kb on + strand, within DDA3937_RS02860 at 631.131 kb on + strand, within DDA3937_RS02860 at 631.135 kb on + strand, within DDA3937_RS02860 at 631.168 kb on + strand, within DDA3937_RS02860 at 631.169 kb on - strand, within DDA3937_RS02860 at 631.169 kb on - strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.201 kb on + strand, within DDA3937_RS02860 at 631.202 kb on - strand, within DDA3937_RS02860 at 631.202 kb on - strand, within DDA3937_RS02860 at 631.215 kb on + strand, within DDA3937_RS02860 at 631.216 kb on - strand, within DDA3937_RS02860 at 631.249 kb on + strand, within DDA3937_RS02860 at 631.249 kb on + strand, within DDA3937_RS02860 at 631.249 kb on + strand, within DDA3937_RS02860 at 631.250 kb on - strand, within DDA3937_RS02860 at 631.251 kb on + strand, within DDA3937_RS02860 at 631.252 kb on - strand, within DDA3937_RS02860 at 631.252 kb on - strand at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.332 kb on + strand, within DDA3937_RS02860 at 631.390 kb on + strand at 631.390 kb on + strand at 631.391 kb on - strand at 631.397 kb on - strand at 631.397 kb on - strand at 631.397 kb on - strand at 631.397 kb on - strand at 631.442 kb on - strand at 631.481 kb on - strand at 631.485 kb on + strand at 631.522 kb on + strand at 631.523 kb on - strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.573 kb on + strand at 631.573 kb on + strand at 631.573 kb on + strand at 631.589 kb on - strand at 631.597 kb on + strand at 631.597 kb on + strand at 631.598 kb on - strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.915 kb on + strand at 631.915 kb on + strand at 631.915 kb on + strand at 631.915 kb on + strand at 631.974 kb on + strand at 631.975 kb on - strand at 632.038 kb on + strand at 632.038 kb on + strand at 632.039 kb on - strand at 632.044 kb on - strand at 632.044 kb on - strand at 632.044 kb on - strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.227 kb on - strand, within DDA3937_RS02865 at 632.301 kb on + strand, within DDA3937_RS02865 at 632.301 kb on + strand, within DDA3937_RS02865 at 632.301 kb on + strand, within DDA3937_RS02865 at 632.302 kb on - strand, within DDA3937_RS02865 at 632.302 kb on - strand, within DDA3937_RS02865 at 632.302 kb on - strand, within DDA3937_RS02865 at 632.435 kb on - strand, within DDA3937_RS02865 at 632.435 kb on - strand, within DDA3937_RS02865 at 632.580 kb on - strand, within DDA3937_RS02865 at 632.712 kb on - strand at 632.821 kb on + strand, within DDA3937_RS02870 at 632.821 kb on + strand, within DDA3937_RS02870 at 632.821 kb on + strand, within DDA3937_RS02870 at 632.822 kb on - strand, within DDA3937_RS02870 at 632.822 kb on - strand, within DDA3937_RS02870 at 632.822 kb on - strand, within DDA3937_RS02870 at 633.071 kb on + strand, within DDA3937_RS02870 at 633.071 kb on + strand, within DDA3937_RS02870 at 633.071 kb on + strand, within DDA3937_RS02870 at 633.072 kb on - strand, within DDA3937_RS02870 at 633.077 kb on + strand, within DDA3937_RS02870 at 633.078 kb on - strand, within DDA3937_RS02870 at 633.144 kb on + strand, within DDA3937_RS02870 at 633.144 kb on + strand, within DDA3937_RS02870 at 633.145 kb on - strand, within DDA3937_RS02870 at 633.145 kb on - strand, within DDA3937_RS02870 at 633.145 kb on - strand, within DDA3937_RS02870 at 633.228 kb on + strand, within DDA3937_RS02870 at 633.229 kb on - strand, within DDA3937_RS02870 at 633.340 kb on - strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.430 kb on + strand, within DDA3937_RS02870 at 633.479 kb on + strand, within DDA3937_RS02870 at 633.501 kb on - strand, within DDA3937_RS02870 at 633.501 kb on - strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.623 kb on + strand, within DDA3937_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 631,084 + DDA3937_RS02860 0.58 +0.5 631,084 + DDA3937_RS02860 0.58 -1.8 631,084 + DDA3937_RS02860 0.58 -0.0 631,085 - DDA3937_RS02860 0.58 -1.9 631,108 - DDA3937_RS02860 0.60 -3.3 631,120 + DDA3937_RS02860 0.62 -3.0 631,120 + DDA3937_RS02860 0.62 -0.2 631,121 - DDA3937_RS02860 0.62 -2.3 631,121 - DDA3937_RS02860 0.62 -1.5 631,131 + DDA3937_RS02860 0.63 -0.4 631,131 + DDA3937_RS02860 0.63 -2.0 631,135 + DDA3937_RS02860 0.63 +1.1 631,168 + DDA3937_RS02860 0.67 -0.4 631,169 - DDA3937_RS02860 0.67 +0.0 631,169 - DDA3937_RS02860 0.67 -0.9 631,180 + DDA3937_RS02860 0.68 -1.7 631,180 + DDA3937_RS02860 0.68 -1.6 631,180 + DDA3937_RS02860 0.68 +0.6 631,180 + DDA3937_RS02860 0.68 -2.1 631,181 - DDA3937_RS02860 0.68 +1.6 631,181 - DDA3937_RS02860 0.68 -2.2 631,181 - DDA3937_RS02860 0.68 -2.2 631,181 - DDA3937_RS02860 0.68 +2.2 631,201 + DDA3937_RS02860 0.70 -0.8 631,202 - DDA3937_RS02860 0.70 +0.6 631,202 - DDA3937_RS02860 0.70 -1.2 631,215 + DDA3937_RS02860 0.72 +2.2 631,216 - DDA3937_RS02860 0.72 -1.3 631,249 + DDA3937_RS02860 0.75 -1.2 631,249 + DDA3937_RS02860 0.75 +0.3 631,249 + DDA3937_RS02860 0.75 +0.4 631,250 - DDA3937_RS02860 0.75 -1.7 631,251 + DDA3937_RS02860 0.76 -1.4 631,252 - DDA3937_RS02860 0.76 -0.9 631,252 - +1.8 631,255 + DDA3937_RS02860 0.76 -0.7 631,255 + DDA3937_RS02860 0.76 +0.6 631,255 + DDA3937_RS02860 0.76 +0.3 631,255 + DDA3937_RS02860 0.76 +1.6 631,255 + DDA3937_RS02860 0.76 -2.7 631,255 + DDA3937_RS02860 0.76 +0.3 631,332 + DDA3937_RS02860 0.84 -2.6 631,390 + -2.5 631,390 + +1.2 631,391 - -0.7 631,397 - -0.9 631,397 - -0.8 631,397 - -0.5 631,397 - -0.9 631,442 - -2.7 631,481 - -2.7 631,485 + +0.0 631,522 + +2.0 631,523 - -2.7 631,532 + +1.6 631,532 + -2.8 631,532 + +1.7 631,532 + -2.5 631,532 + -3.8 631,532 + +2.0 631,532 + +0.0 631,532 + +0.5 631,532 + -2.9 631,532 + +1.1 631,532 + +1.3 631,532 + +1.6 631,533 - -0.4 631,533 - +0.8 631,533 - -0.6 631,533 - -1.5 631,533 - -3.2 631,533 - -1.9 631,533 - -1.9 631,533 - +0.5 631,533 - -0.9 631,533 - +0.2 631,533 - +0.0 631,533 - -1.4 631,533 - +0.4 631,533 - +0.0 631,533 - +1.5 631,533 - -1.7 631,533 - -0.7 631,533 - -2.2 631,573 + -1.0 631,573 + -2.0 631,573 + -0.4 631,589 - +1.6 631,597 + -0.4 631,597 + -1.7 631,598 - +1.6 631,911 + -1.9 631,911 + +1.4 631,911 + -0.1 631,911 + +0.4 631,911 + +0.7 631,912 - -1.1 631,912 - +2.1 631,912 - -1.4 631,912 - +0.4 631,912 - -2.4 631,912 - -0.7 631,912 - -1.9 631,912 - -0.2 631,915 + -2.0 631,915 + -0.4 631,915 + -0.2 631,915 + -0.4 631,974 + +1.1 631,975 - +0.5 632,038 + -2.2 632,038 + -1.9 632,039 - -2.9 632,044 - -2.0 632,044 - -0.9 632,044 - -1.1 632,106 + -1.2 632,106 + -0.4 632,106 + -1.2 632,106 + +0.6 632,106 + +0.9 632,107 - -1.0 632,107 - -4.0 632,107 - -2.0 632,107 - -1.3 632,107 - -2.1 632,226 + DDA3937_RS02865 0.26 -2.6 632,226 + DDA3937_RS02865 0.26 -1.4 632,226 + DDA3937_RS02865 0.26 -1.1 632,226 + DDA3937_RS02865 0.26 -2.4 632,226 + DDA3937_RS02865 0.26 -1.2 632,227 - DDA3937_RS02865 0.26 -0.3 632,301 + DDA3937_RS02865 0.38 -1.8 632,301 + DDA3937_RS02865 0.38 -0.8 632,301 + DDA3937_RS02865 0.38 -2.7 632,302 - DDA3937_RS02865 0.39 -1.7 632,302 - DDA3937_RS02865 0.39 +0.6 632,302 - DDA3937_RS02865 0.39 -1.7 632,435 - DDA3937_RS02865 0.61 -2.4 632,435 - DDA3937_RS02865 0.61 -0.3 632,580 - DDA3937_RS02865 0.86 -2.5 632,712 - +0.1 632,821 + DDA3937_RS02870 0.10 -0.3 632,821 + DDA3937_RS02870 0.10 +3.0 632,821 + DDA3937_RS02870 0.10 -1.7 632,822 - DDA3937_RS02870 0.10 -2.6 632,822 - DDA3937_RS02870 0.10 -0.6 632,822 - DDA3937_RS02870 0.10 -2.7 633,071 + DDA3937_RS02870 0.27 -1.0 633,071 + DDA3937_RS02870 0.27 -3.2 633,071 + DDA3937_RS02870 0.27 -2.4 633,072 - DDA3937_RS02870 0.27 -1.1 633,077 + DDA3937_RS02870 0.27 -2.5 633,078 - DDA3937_RS02870 0.27 -4.1 633,144 + DDA3937_RS02870 0.32 -1.6 633,144 + DDA3937_RS02870 0.32 -1.5 633,145 - DDA3937_RS02870 0.32 +0.6 633,145 - DDA3937_RS02870 0.32 -3.1 633,145 - DDA3937_RS02870 0.32 -1.4 633,228 + DDA3937_RS02870 0.37 -0.7 633,229 - DDA3937_RS02870 0.37 -3.2 633,340 - DDA3937_RS02870 0.45 -1.7 633,427 + DDA3937_RS02870 0.50 -0.8 633,427 + DDA3937_RS02870 0.50 -1.6 633,427 + DDA3937_RS02870 0.50 -2.1 633,427 + DDA3937_RS02870 0.50 -1.2 633,428 - DDA3937_RS02870 0.51 +0.4 633,428 - DDA3937_RS02870 0.51 -2.0 633,428 - DDA3937_RS02870 0.51 -1.6 633,428 - DDA3937_RS02870 0.51 +1.3 633,430 + DDA3937_RS02870 0.51 -0.2 633,479 + DDA3937_RS02870 0.54 -0.6 633,501 - DDA3937_RS02870 0.55 +1.1 633,501 - DDA3937_RS02870 0.55 -2.5 633,620 + DDA3937_RS02870 0.63 -2.6 633,620 + DDA3937_RS02870 0.63 -1.4 633,620 + DDA3937_RS02870 0.63 -0.8 633,620 + DDA3937_RS02870 0.63 -2.7 633,620 + DDA3937_RS02870 0.63 -1.2 633,620 + DDA3937_RS02870 0.63 -0.3 633,620 + DDA3937_RS02870 0.63 -2.6 633,621 - DDA3937_RS02870 0.63 -1.0 633,621 - DDA3937_RS02870 0.63 -0.5 633,621 - DDA3937_RS02870 0.63 -1.9 633,621 - DDA3937_RS02870 0.63 -0.5 633,621 - DDA3937_RS02870 0.63 -1.5 633,621 - DDA3937_RS02870 0.63 -0.7 633,621 - DDA3937_RS02870 0.63 -0.2 633,623 + DDA3937_RS02870 0.63 +1.6
Or see this region's nucleotide sequence