Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02645 and DDA3937_RS02650 overlap by 4 nucleotides DDA3937_RS02650 and DDA3937_RS02655 are separated by 496 nucleotides DDA3937_RS02655 and DDA3937_RS02660 overlap by 8 nucleotides
DDA3937_RS02645: DDA3937_RS02645 - DUF1778 domain-containing protein, at 587,253 to 587,546
_RS02645
DDA3937_RS02650: DDA3937_RS02650 - GNAT family N-acetyltransferase, at 587,543 to 588,031
_RS02650
DDA3937_RS02655: DDA3937_RS02655 - RNA-directed DNA polymerase, at 588,528 to 590,570
_RS02655
DDA3937_RS02660: DDA3937_RS02660 - RNA-directed DNA polymerase, at 590,563 to 591,906
_RS02660
Position (kb) 588
589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 587.580 kb on + strand at 587.580 kb on + strand at 587.580 kb on + strand at 587.580 kb on + strand at 587.580 kb on + strand at 587.581 kb on - strand at 587.581 kb on - strand at 587.612 kb on - strand, within DDA3937_RS02650 at 587.612 kb on - strand, within DDA3937_RS02650 at 587.705 kb on + strand, within DDA3937_RS02650 at 587.705 kb on + strand, within DDA3937_RS02650 at 587.706 kb on - strand, within DDA3937_RS02650 at 587.706 kb on - strand, within DDA3937_RS02650 at 587.706 kb on - strand, within DDA3937_RS02650 at 587.708 kb on + strand, within DDA3937_RS02650 at 587.768 kb on - strand, within DDA3937_RS02650 at 587.811 kb on + strand, within DDA3937_RS02650 at 587.815 kb on + strand, within DDA3937_RS02650 at 587.816 kb on - strand, within DDA3937_RS02650 at 587.816 kb on - strand, within DDA3937_RS02650 at 587.823 kb on + strand, within DDA3937_RS02650 at 587.823 kb on + strand, within DDA3937_RS02650 at 587.823 kb on + strand, within DDA3937_RS02650 at 587.824 kb on - strand at 587.824 kb on - strand, within DDA3937_RS02650 at 587.824 kb on - strand, within DDA3937_RS02650 at 587.895 kb on + strand, within DDA3937_RS02650 at 587.895 kb on + strand, within DDA3937_RS02650 at 587.895 kb on + strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.899 kb on + strand, within DDA3937_RS02650 at 588.025 kb on + strand at 588.026 kb on - strand at 588.029 kb on + strand at 588.162 kb on + strand at 588.179 kb on - strand at 588.184 kb on + strand at 588.188 kb on + strand at 588.212 kb on + strand at 588.212 kb on + strand at 588.220 kb on + strand at 588.237 kb on + strand at 588.238 kb on - strand at 588.245 kb on - strand at 588.245 kb on - strand at 588.248 kb on + strand at 588.249 kb on - strand at 588.249 kb on - strand at 588.265 kb on - strand at 588.297 kb on - strand at 588.336 kb on + strand at 588.336 kb on + strand at 588.338 kb on + strand at 588.338 kb on + strand at 588.346 kb on + strand at 588.347 kb on - strand at 588.369 kb on + strand at 588.372 kb on + strand at 588.376 kb on + strand at 588.376 kb on + strand at 588.377 kb on - strand at 588.394 kb on - strand at 588.443 kb on - strand at 588.443 kb on - strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.467 kb on - strand at 588.534 kb on + strand at 588.616 kb on - strand at 588.644 kb on + strand at 588.680 kb on + strand at 588.685 kb on - strand at 588.685 kb on - strand at 588.829 kb on + strand, within DDA3937_RS02655 at 588.914 kb on + strand, within DDA3937_RS02655 at 588.943 kb on + strand, within DDA3937_RS02655 at 588.976 kb on + strand, within DDA3937_RS02655 at 589.070 kb on - strand, within DDA3937_RS02655 at 589.165 kb on + strand, within DDA3937_RS02655 at 589.165 kb on + strand, within DDA3937_RS02655 at 589.165 kb on + strand, within DDA3937_RS02655 at 589.166 kb on - strand, within DDA3937_RS02655 at 589.170 kb on - strand, within DDA3937_RS02655 at 589.320 kb on - strand, within DDA3937_RS02655 at 589.374 kb on + strand, within DDA3937_RS02655 at 589.374 kb on + strand, within DDA3937_RS02655 at 589.375 kb on - strand, within DDA3937_RS02655 at 589.552 kb on - strand, within DDA3937_RS02655 at 589.692 kb on - strand, within DDA3937_RS02655 at 589.928 kb on - strand, within DDA3937_RS02655 at 589.985 kb on + strand, within DDA3937_RS02655 at 590.052 kb on + strand, within DDA3937_RS02655 at 590.103 kb on - strand, within DDA3937_RS02655 at 590.233 kb on + strand, within DDA3937_RS02655 at 590.238 kb on - strand, within DDA3937_RS02655 at 590.282 kb on + strand, within DDA3937_RS02655 at 590.287 kb on - strand, within DDA3937_RS02655 at 590.291 kb on + strand, within DDA3937_RS02655 at 590.315 kb on + strand, within DDA3937_RS02655 at 590.315 kb on + strand, within DDA3937_RS02655 at 590.321 kb on + strand, within DDA3937_RS02655 at 590.374 kb on - strand at 590.654 kb on - strand at 590.768 kb on + strand, within DDA3937_RS02660 at 590.799 kb on + strand, within DDA3937_RS02660 at 590.876 kb on + strand, within DDA3937_RS02660 at 590.886 kb on + strand, within DDA3937_RS02660 at 591.095 kb on + strand, within DDA3937_RS02660 at 591.099 kb on + strand, within DDA3937_RS02660 at 591.172 kb on - strand, within DDA3937_RS02660 at 591.172 kb on - strand, within DDA3937_RS02660 at 591.200 kb on - strand, within DDA3937_RS02660 at 591.350 kb on - strand, within DDA3937_RS02660 at 591.411 kb on + strand, within DDA3937_RS02660
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 587,580 + -2.6 587,580 + -0.3 587,580 + +0.0 587,580 + -1.7 587,580 + -1.2 587,581 - +3.1 587,581 - +1.6 587,612 - DDA3937_RS02650 0.14 +0.0 587,612 - DDA3937_RS02650 0.14 +0.3 587,705 + DDA3937_RS02650 0.33 -2.7 587,705 + DDA3937_RS02650 0.33 -2.1 587,706 - DDA3937_RS02650 0.33 -0.4 587,706 - DDA3937_RS02650 0.33 -1.2 587,706 - DDA3937_RS02650 0.33 -3.0 587,708 + DDA3937_RS02650 0.34 -2.9 587,768 - DDA3937_RS02650 0.46 -2.3 587,811 + DDA3937_RS02650 0.55 -0.6 587,815 + DDA3937_RS02650 0.56 -1.0 587,816 - DDA3937_RS02650 0.56 +0.4 587,816 - DDA3937_RS02650 0.56 -1.2 587,823 + DDA3937_RS02650 0.57 -0.5 587,823 + DDA3937_RS02650 0.57 -3.1 587,823 + DDA3937_RS02650 0.57 -1.1 587,824 - -0.4 587,824 - DDA3937_RS02650 0.57 -2.8 587,824 - DDA3937_RS02650 0.57 -1.7 587,895 + DDA3937_RS02650 0.72 -0.9 587,895 + DDA3937_RS02650 0.72 -0.8 587,895 + DDA3937_RS02650 0.72 +0.8 587,896 - DDA3937_RS02650 0.72 -2.7 587,896 - DDA3937_RS02650 0.72 -0.2 587,896 - DDA3937_RS02650 0.72 -1.6 587,896 - DDA3937_RS02650 0.72 -1.7 587,896 - DDA3937_RS02650 0.72 -3.5 587,896 - DDA3937_RS02650 0.72 -2.7 587,896 - DDA3937_RS02650 0.72 -1.0 587,899 + DDA3937_RS02650 0.73 +0.0 588,025 + -0.7 588,026 - -3.8 588,029 + -2.2 588,162 + +1.9 588,179 - +2.6 588,184 + +0.0 588,188 + +0.0 588,212 + -0.9 588,212 + -3.5 588,220 + -1.1 588,237 + +0.6 588,238 - -1.7 588,245 - -0.4 588,245 - -0.3 588,248 + -0.6 588,249 - -1.2 588,249 - -2.3 588,265 - +1.8 588,297 - -0.6 588,336 + -1.2 588,336 + +0.6 588,338 + -0.0 588,338 + -0.4 588,346 + -2.4 588,347 - -1.7 588,369 + -0.5 588,372 + -0.4 588,376 + -1.7 588,376 + -2.2 588,377 - -0.6 588,394 - -2.3 588,443 - +0.5 588,443 - -2.5 588,464 + -1.2 588,464 + -1.2 588,464 + +0.6 588,464 + -2.2 588,464 + -0.7 588,465 - +1.6 588,465 - +2.3 588,465 - -1.7 588,465 - -0.8 588,465 - -0.7 588,465 - +0.6 588,465 - -3.1 588,467 - -1.9 588,534 + -3.5 588,616 - -3.1 588,644 + +1.8 588,680 + -2.9 588,685 - -0.7 588,685 - +0.5 588,829 + DDA3937_RS02655 0.15 -0.9 588,914 + DDA3937_RS02655 0.19 -1.9 588,943 + DDA3937_RS02655 0.20 -1.9 588,976 + DDA3937_RS02655 0.22 +0.0 589,070 - DDA3937_RS02655 0.27 +0.3 589,165 + DDA3937_RS02655 0.31 -1.1 589,165 + DDA3937_RS02655 0.31 -2.3 589,165 + DDA3937_RS02655 0.31 -1.5 589,166 - DDA3937_RS02655 0.31 -2.0 589,170 - DDA3937_RS02655 0.31 -1.0 589,320 - DDA3937_RS02655 0.39 -2.5 589,374 + DDA3937_RS02655 0.41 -3.8 589,374 + DDA3937_RS02655 0.41 -1.9 589,375 - DDA3937_RS02655 0.41 +1.7 589,552 - DDA3937_RS02655 0.50 -3.2 589,692 - DDA3937_RS02655 0.57 +1.8 589,928 - DDA3937_RS02655 0.69 -1.9 589,985 + DDA3937_RS02655 0.71 -3.2 590,052 + DDA3937_RS02655 0.75 -1.2 590,103 - DDA3937_RS02655 0.77 -2.1 590,233 + DDA3937_RS02655 0.83 -2.4 590,238 - DDA3937_RS02655 0.84 -2.8 590,282 + DDA3937_RS02655 0.86 +0.1 590,287 - DDA3937_RS02655 0.86 -0.8 590,291 + DDA3937_RS02655 0.86 -0.4 590,315 + DDA3937_RS02655 0.87 -1.1 590,315 + DDA3937_RS02655 0.87 +0.6 590,321 + DDA3937_RS02655 0.88 -3.1 590,374 - -0.9 590,654 - -2.0 590,768 + DDA3937_RS02660 0.15 -1.4 590,799 + DDA3937_RS02660 0.18 -2.4 590,876 + DDA3937_RS02660 0.23 -2.2 590,886 + DDA3937_RS02660 0.24 -1.6 591,095 + DDA3937_RS02660 0.40 -2.0 591,099 + DDA3937_RS02660 0.40 -0.7 591,172 - DDA3937_RS02660 0.45 -0.9 591,172 - DDA3937_RS02660 0.45 -0.9 591,200 - DDA3937_RS02660 0.47 +1.1 591,350 - DDA3937_RS02660 0.59 -1.5 591,411 + DDA3937_RS02660 0.63 +1.5
Or see this region's nucleotide sequence