Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02450 and DDA3937_RS21810 are separated by 160 nucleotides DDA3937_RS21810 and DDA3937_RS02455 are separated by 99 nucleotides DDA3937_RS02455 and DDA3937_RS02460 are separated by 70 nucleotides DDA3937_RS02460 and DDA3937_RS02465 are separated by 284 nucleotides
DDA3937_RS02450: DDA3937_RS02450 - molecular chaperone OsmY, at 543,074 to 543,730
_RS02450
DDA3937_RS21810: DDA3937_RS21810 - DUF1328 domain-containing protein, at 543,891 to 544,052
_RS21810
DDA3937_RS02455: DDA3937_RS02455 - stress response protein, at 544,152 to 544,340
_RS02455
DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253
_RS02460
DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257
_RS02465
Position (kb) 544
545
546 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 543.474 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.597 kb on + strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.733 kb on + strand at 543.733 kb on + strand at 543.733 kb on + strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.771 kb on + strand at 543.824 kb on + strand at 543.824 kb on + strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.846 kb on + strand at 543.908 kb on + strand, within DDA3937_RS21810 at 543.908 kb on + strand, within DDA3937_RS21810 at 543.909 kb on - strand, within DDA3937_RS21810 at 544.007 kb on + strand, within DDA3937_RS21810 at 544.007 kb on + strand, within DDA3937_RS21810 at 544.008 kb on - strand, within DDA3937_RS21810 at 544.030 kb on + strand, within DDA3937_RS21810 at 544.031 kb on - strand, within DDA3937_RS21810 at 544.050 kb on + strand at 544.050 kb on + strand at 544.051 kb on - strand at 544.073 kb on + strand at 544.073 kb on + strand at 544.073 kb on + strand at 544.085 kb on - strand at 544.085 kb on - strand at 544.287 kb on + strand, within DDA3937_RS02455 at 544.287 kb on + strand, within DDA3937_RS02455 at 544.287 kb on + strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.363 kb on + strand at 544.364 kb on - strand at 544.367 kb on + strand at 544.368 kb on - strand at 544.624 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.652 kb on - strand, within DDA3937_RS02460 at 544.753 kb on + strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.807 kb on - strand, within DDA3937_RS02460 at 544.877 kb on + strand, within DDA3937_RS02460 at 544.878 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.966 kb on + strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.997 kb on - strand, within DDA3937_RS02460 at 545.121 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.271 kb on + strand at 545.305 kb on - strand at 545.305 kb on - strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.308 kb on - strand at 545.317 kb on + strand at 545.317 kb on + strand at 545.318 kb on - strand at 545.340 kb on - strand at 545.425 kb on - strand at 545.456 kb on - strand at 545.471 kb on + strand at 545.472 kb on - strand at 545.481 kb on + strand at 545.481 kb on + strand at 545.482 kb on - strand at 545.482 kb on - strand at 545.559 kb on - strand at 545.604 kb on + strand at 545.604 kb on + strand at 545.604 kb on + strand at 545.605 kb on - strand at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.832 kb on - strand, within DDA3937_RS02465 at 545.952 kb on - strand, within DDA3937_RS02465 at 545.952 kb on - strand, within DDA3937_RS02465 at 545.986 kb on - strand, within DDA3937_RS02465 at 545.986 kb on - strand, within DDA3937_RS02465 at 546.026 kb on + strand, within DDA3937_RS02465 at 546.027 kb on - strand, within DDA3937_RS02465 at 546.064 kb on - strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.076 kb on - strand, within DDA3937_RS02465 at 546.213 kb on + strand at 546.213 kb on + strand at 546.214 kb on - strand at 546.214 kb on - strand at 546.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 543,474 + DDA3937_RS02450 0.61 -0.6 543,498 + DDA3937_RS02450 0.65 -0.6 543,498 + DDA3937_RS02450 0.65 -2.6 543,498 + DDA3937_RS02450 0.65 -0.0 543,515 + DDA3937_RS02450 0.67 -0.7 543,515 + DDA3937_RS02450 0.67 -0.7 543,515 + DDA3937_RS02450 0.67 +1.2 543,515 + DDA3937_RS02450 0.67 -0.5 543,516 - DDA3937_RS02450 0.67 -3.3 543,516 - DDA3937_RS02450 0.67 +1.0 543,516 - DDA3937_RS02450 0.67 +0.0 543,516 - DDA3937_RS02450 0.67 -1.2 543,516 - DDA3937_RS02450 0.67 -1.1 543,597 + DDA3937_RS02450 0.80 -1.2 543,598 - DDA3937_RS02450 0.80 +1.0 543,598 - DDA3937_RS02450 0.80 -1.4 543,598 - DDA3937_RS02450 0.80 +1.0 543,733 + -1.5 543,733 + -1.0 543,733 + -3.5 543,734 - +0.1 543,734 - +1.8 543,734 - -0.2 543,771 + -0.3 543,824 + -0.4 543,824 + -1.2 543,825 - +1.8 543,825 - +1.7 543,825 - +0.0 543,825 - +0.1 543,825 - +0.7 543,825 - +0.2 543,825 - +0.8 543,825 - +0.2 543,825 - -0.2 543,846 + +0.2 543,908 + DDA3937_RS21810 0.10 +1.5 543,908 + DDA3937_RS21810 0.10 -0.7 543,909 - DDA3937_RS21810 0.11 +1.4 544,007 + DDA3937_RS21810 0.72 -0.8 544,007 + DDA3937_RS21810 0.72 +0.7 544,008 - DDA3937_RS21810 0.72 -1.7 544,030 + DDA3937_RS21810 0.86 +0.2 544,031 - DDA3937_RS21810 0.86 +1.6 544,050 + -3.3 544,050 + +0.2 544,051 - -2.2 544,073 + -1.0 544,073 + +0.8 544,073 + -1.8 544,085 - -2.4 544,085 - -1.9 544,287 + DDA3937_RS02455 0.71 +0.4 544,287 + DDA3937_RS02455 0.71 -2.6 544,287 + DDA3937_RS02455 0.71 -1.0 544,288 - DDA3937_RS02455 0.72 -1.4 544,288 - DDA3937_RS02455 0.72 -1.6 544,288 - DDA3937_RS02455 0.72 +1.2 544,288 - DDA3937_RS02455 0.72 -0.8 544,363 + -2.5 544,364 - -0.7 544,367 + +0.8 544,368 - -0.4 544,624 + DDA3937_RS02460 0.25 +0.2 544,651 + DDA3937_RS02460 0.28 -1.3 544,651 + DDA3937_RS02460 0.28 -2.0 544,651 + DDA3937_RS02460 0.28 -1.8 544,652 - DDA3937_RS02460 0.29 +1.2 544,753 + DDA3937_RS02460 0.41 -1.2 544,754 - DDA3937_RS02460 0.41 -1.2 544,754 - DDA3937_RS02460 0.41 +0.6 544,754 - DDA3937_RS02460 0.41 -0.6 544,754 - DDA3937_RS02460 0.41 -0.8 544,754 - DDA3937_RS02460 0.41 -2.0 544,807 - DDA3937_RS02460 0.47 -1.1 544,877 + DDA3937_RS02460 0.55 -1.3 544,878 - DDA3937_RS02460 0.55 -2.8 544,934 - DDA3937_RS02460 0.62 -1.7 544,934 - DDA3937_RS02460 0.62 -0.2 544,966 + DDA3937_RS02460 0.66 -1.7 544,967 - DDA3937_RS02460 0.66 -2.1 544,967 - DDA3937_RS02460 0.66 -2.7 544,969 + DDA3937_RS02460 0.66 +2.2 544,969 + DDA3937_RS02460 0.66 -3.0 544,970 - DDA3937_RS02460 0.66 -2.3 544,970 - DDA3937_RS02460 0.66 +0.4 544,997 - DDA3937_RS02460 0.70 +3.4 545,121 + DDA3937_RS02460 0.84 +0.4 545,124 + DDA3937_RS02460 0.85 +1.6 545,124 + DDA3937_RS02460 0.85 +1.5 545,124 + DDA3937_RS02460 0.85 -1.6 545,124 + DDA3937_RS02460 0.85 -1.3 545,124 + DDA3937_RS02460 0.85 -0.7 545,125 - DDA3937_RS02460 0.85 +0.4 545,125 - DDA3937_RS02460 0.85 -0.4 545,125 - DDA3937_RS02460 0.85 +1.3 545,271 + -1.9 545,305 - -0.5 545,305 - +1.2 545,307 + -1.6 545,307 + +1.6 545,307 + +0.8 545,307 + -1.4 545,308 - +1.0 545,317 + -1.0 545,317 + -2.8 545,318 - -2.4 545,340 - -0.3 545,425 - +0.4 545,456 - -0.8 545,471 + -2.0 545,472 - -2.3 545,481 + +0.2 545,481 + -0.1 545,482 - +1.3 545,482 - +0.8 545,559 - +0.9 545,604 + +0.5 545,604 + -2.3 545,604 + +0.0 545,605 - +0.0 545,784 + DDA3937_RS02465 0.34 -4.2 545,784 + DDA3937_RS02465 0.34 -0.3 545,784 + DDA3937_RS02465 0.34 -0.5 545,784 + DDA3937_RS02465 0.34 +0.8 545,784 + DDA3937_RS02465 0.34 -1.7 545,784 + DDA3937_RS02465 0.34 +0.1 545,784 + DDA3937_RS02465 0.34 -1.8 545,785 - DDA3937_RS02465 0.34 -1.9 545,785 - DDA3937_RS02465 0.34 -1.9 545,785 - DDA3937_RS02465 0.34 +0.0 545,832 - DDA3937_RS02465 0.41 -0.3 545,952 - DDA3937_RS02465 0.57 -2.0 545,952 - DDA3937_RS02465 0.57 -1.4 545,986 - DDA3937_RS02465 0.62 -1.2 545,986 - DDA3937_RS02465 0.62 -1.0 546,026 + DDA3937_RS02465 0.68 -1.6 546,027 - DDA3937_RS02465 0.68 -3.1 546,064 - DDA3937_RS02465 0.73 -2.0 546,075 + DDA3937_RS02465 0.75 +0.3 546,075 + DDA3937_RS02465 0.75 -1.0 546,075 + DDA3937_RS02465 0.75 -2.6 546,076 - DDA3937_RS02465 0.75 +1.8 546,213 + +0.1 546,213 + +0.8 546,214 - +0.1 546,214 - +0.3 546,214 - -1.6
Or see this region's nucleotide sequence