Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02270 and DDA3937_RS02275 are separated by 44 nucleotides DDA3937_RS02275 and DDA3937_RS02280 are separated by 183 nucleotides DDA3937_RS02280 and DDA3937_RS02285 are separated by 383 nucleotides
DDA3937_RS02270: DDA3937_RS02270 - DUF4276 family protein, at 503,959 to 504,612
_RS02270
DDA3937_RS02275: DDA3937_RS02275 - Lrp/AsnC ligand binding domain-containing protein, at 504,657 to 505,160
_RS02275
DDA3937_RS02280: DDA3937_RS02280 - chorismate mutase, at 505,344 to 505,874
_RS02280
DDA3937_RS02285: DDA3937_RS02285 - MFS transporter, at 506,258 to 507,490
_RS02285
Position (kb) 505
506 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 504.445 kb on - strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.468 kb on + strand, within DDA3937_RS02270 at 504.474 kb on + strand, within DDA3937_RS02270 at 504.486 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand at 504.492 kb on + strand, within DDA3937_RS02270 at 504.492 kb on + strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.493 kb on - strand, within DDA3937_RS02270 at 504.496 kb on + strand, within DDA3937_RS02270 at 504.497 kb on - strand, within DDA3937_RS02270 at 504.509 kb on + strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.510 kb on - strand, within DDA3937_RS02270 at 504.615 kb on + strand at 504.615 kb on + strand at 504.616 kb on - strand at 504.616 kb on - strand at 504.628 kb on - strand at 504.637 kb on - strand at 504.637 kb on - strand at 504.658 kb on + strand at 504.659 kb on - strand at 504.701 kb on + strand at 504.758 kb on + strand, within DDA3937_RS02275 at 504.758 kb on + strand, within DDA3937_RS02275 at 504.759 kb on - strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.799 kb on + strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.800 kb on - strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.833 kb on + strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.834 kb on - strand, within DDA3937_RS02275 at 504.961 kb on + strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand, within DDA3937_RS02275 at 504.962 kb on - strand at 505.005 kb on + strand, within DDA3937_RS02275 at 505.005 kb on + strand, within DDA3937_RS02275 at 505.005 kb on + strand, within DDA3937_RS02275 at 505.006 kb on - strand, within DDA3937_RS02275 at 505.078 kb on + strand, within DDA3937_RS02275 at 505.079 kb on - strand, within DDA3937_RS02275 at 505.079 kb on - strand, within DDA3937_RS02275 at 505.176 kb on - strand at 505.188 kb on + strand at 505.188 kb on + strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.189 kb on - strand at 505.228 kb on - strand at 505.249 kb on + strand at 505.250 kb on - strand at 505.297 kb on - strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.346 kb on - strand at 505.353 kb on + strand at 505.600 kb on + strand, within DDA3937_RS02280 at 505.754 kb on - strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.775 kb on - strand, within DDA3937_RS02280 at 505.869 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.898 kb on - strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 506.033 kb on + strand at 506.131 kb on + strand at 506.131 kb on + strand at 506.132 kb on - strand at 506.205 kb on - strand at 506.216 kb on + strand at 506.216 kb on + strand at 506.217 kb on - strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.365 kb on + strand at 506.488 kb on - strand, within DDA3937_RS02285 at 506.521 kb on + strand, within DDA3937_RS02285 at 506.521 kb on + strand at 506.522 kb on - strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.560 kb on - strand, within DDA3937_RS02285 at 506.560 kb on - strand, within DDA3937_RS02285 at 506.722 kb on + strand, within DDA3937_RS02285 at 506.740 kb on - strand, within DDA3937_RS02285 at 506.809 kb on + strand, within DDA3937_RS02285 at 506.809 kb on + strand, within DDA3937_RS02285 at 506.810 kb on - strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.813 kb on - strand, within DDA3937_RS02285 at 506.862 kb on - strand, within DDA3937_RS02285
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 504,445 - DDA3937_RS02270 0.74 -1.1 504,468 + DDA3937_RS02270 0.78 -1.5 504,468 + DDA3937_RS02270 0.78 +2.0 504,474 + DDA3937_RS02270 0.79 -1.8 504,486 + DDA3937_RS02270 0.81 +1.1 504,492 + DDA3937_RS02270 0.81 +2.8 504,492 + DDA3937_RS02270 0.81 -0.6 504,492 + +0.1 504,492 + DDA3937_RS02270 0.81 -1.5 504,492 + DDA3937_RS02270 0.81 -2.8 504,493 - DDA3937_RS02270 0.82 -1.8 504,493 - DDA3937_RS02270 0.82 +0.9 504,496 + DDA3937_RS02270 0.82 -0.4 504,497 - DDA3937_RS02270 0.82 -2.7 504,509 + DDA3937_RS02270 0.84 -1.1 504,510 - DDA3937_RS02270 0.84 -0.2 504,510 - DDA3937_RS02270 0.84 +0.3 504,510 - DDA3937_RS02270 0.84 -1.7 504,615 + -3.8 504,615 + -2.1 504,616 - -0.7 504,616 - -3.1 504,628 - +1.5 504,637 - +0.3 504,637 - -0.8 504,658 + +0.6 504,659 - +1.4 504,701 + +0.2 504,758 + DDA3937_RS02275 0.20 -0.5 504,758 + DDA3937_RS02275 0.20 +2.5 504,759 - DDA3937_RS02275 0.20 -1.8 504,799 + DDA3937_RS02275 0.28 +2.4 504,799 + DDA3937_RS02275 0.28 -0.7 504,799 + DDA3937_RS02275 0.28 -0.5 504,800 - DDA3937_RS02275 0.28 -3.1 504,800 - DDA3937_RS02275 0.28 +0.9 504,800 - DDA3937_RS02275 0.28 -3.0 504,800 - DDA3937_RS02275 0.28 +1.1 504,800 - DDA3937_RS02275 0.28 +1.3 504,833 + DDA3937_RS02275 0.35 -0.2 504,833 + DDA3937_RS02275 0.35 -1.9 504,834 - DDA3937_RS02275 0.35 +0.2 504,834 - DDA3937_RS02275 0.35 +2.0 504,961 + DDA3937_RS02275 0.60 +1.9 504,962 - DDA3937_RS02275 0.61 -2.3 504,962 - DDA3937_RS02275 0.61 -0.4 504,962 - +3.0 505,005 + DDA3937_RS02275 0.69 -2.0 505,005 + DDA3937_RS02275 0.69 -1.7 505,005 + DDA3937_RS02275 0.69 +0.6 505,006 - DDA3937_RS02275 0.69 -1.4 505,078 + DDA3937_RS02275 0.84 -2.3 505,079 - DDA3937_RS02275 0.84 +0.1 505,079 - DDA3937_RS02275 0.84 +0.1 505,176 - -1.0 505,188 + +0.5 505,188 + -2.7 505,189 - +0.6 505,189 - -0.2 505,189 - -2.2 505,189 - -0.9 505,189 - -0.2 505,228 - +0.6 505,249 + +0.2 505,250 - -0.2 505,297 - -0.6 505,345 + -0.5 505,345 + -1.4 505,345 + +0.3 505,345 + -1.4 505,346 - +1.2 505,353 + -1.2 505,600 + DDA3937_RS02280 0.48 -2.1 505,754 - DDA3937_RS02280 0.77 -1.2 505,774 + DDA3937_RS02280 0.81 -3.0 505,774 + DDA3937_RS02280 0.81 -1.5 505,774 + DDA3937_RS02280 0.81 -1.8 505,775 - DDA3937_RS02280 0.81 -3.2 505,869 + -1.8 505,874 + -0.1 505,874 + +1.8 505,874 + +0.1 505,874 + +0.6 505,874 + +0.6 505,874 + -2.0 505,874 + -1.3 505,874 + -0.6 505,874 + +1.2 505,875 - -4.2 505,875 - -1.0 505,875 - +0.6 505,875 - +0.6 505,875 - +0.8 505,875 - -1.5 505,875 - -2.1 505,897 + +3.6 505,897 + +0.5 505,897 + +0.0 505,898 - +0.1 505,972 + +1.1 505,972 + -0.3 505,972 + -1.8 505,972 + -0.9 505,972 + -2.4 505,972 + +0.1 505,972 + +0.3 505,973 - -0.4 505,973 - -0.4 505,973 - -0.3 505,973 - +0.8 505,973 - -1.4 505,973 - +0.4 505,973 - +1.4 505,973 - +1.1 505,973 - +1.1 505,973 - -3.2 506,033 + +0.8 506,131 + -3.3 506,131 + +1.6 506,132 - -0.3 506,205 - -1.6 506,216 + -0.1 506,216 + +0.9 506,217 - -1.3 506,253 + +0.8 506,253 + -0.4 506,253 + -1.2 506,253 + -1.2 506,253 + -1.0 506,254 - +0.5 506,254 - -1.0 506,254 - +0.0 506,254 - -2.0 506,254 - -1.0 506,254 - +1.1 506,365 + -0.5 506,488 - DDA3937_RS02285 0.19 +0.2 506,521 + DDA3937_RS02285 0.21 +0.4 506,521 + +0.0 506,522 - DDA3937_RS02285 0.21 -0.5 506,559 + DDA3937_RS02285 0.24 +1.8 506,559 + DDA3937_RS02285 0.24 -0.3 506,559 + DDA3937_RS02285 0.24 -1.7 506,560 - DDA3937_RS02285 0.24 +0.4 506,560 - DDA3937_RS02285 0.24 -1.5 506,722 + DDA3937_RS02285 0.38 -0.1 506,740 - DDA3937_RS02285 0.39 +1.0 506,809 + DDA3937_RS02285 0.45 -2.9 506,809 + DDA3937_RS02285 0.45 -1.7 506,810 - DDA3937_RS02285 0.45 -2.6 506,812 + DDA3937_RS02285 0.45 +0.0 506,812 + DDA3937_RS02285 0.45 -1.5 506,812 + DDA3937_RS02285 0.45 -0.4 506,813 - DDA3937_RS02285 0.45 -1.2 506,862 - DDA3937_RS02285 0.49 -0.5
Or see this region's nucleotide sequence