Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02195 and DDA3937_RS02200 are separated by 10 nucleotides DDA3937_RS02200 and DDA3937_RS02205 are separated by 102 nucleotides DDA3937_RS02205 and DDA3937_RS02210 are separated by 71 nucleotides DDA3937_RS02210 and DDA3937_RS02215 are separated by 113 nucleotides
DDA3937_RS02195: DDA3937_RS02195 - FGGY-family carbohydrate kinase, at 487,113 to 488,624
_RS02195
DDA3937_RS02200: DDA3937_RS02200 - SDR family oxidoreductase, at 488,635 to 489,432
_RS02200
DDA3937_RS02205: DDA3937_RS02205 - type-1Aa cytolytic delta-endotoxin, at 489,535 to 490,194
_RS02205
DDA3937_RS02210: DDA3937_RS02210 - type-1Ba cytolytic delta-endotoxin, at 490,266 to 490,877
_RS02210
DDA3937_RS02215: DDA3937_RS02215 - type-2Aa cytolytic delta-endotoxin, at 490,991 to 491,590
_RS02215
Position (kb) 489
490
491 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 488.651 kb on - strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.655 kb on + strand at 488.783 kb on + strand, within DDA3937_RS02200 at 488.783 kb on + strand, within DDA3937_RS02200 at 488.783 kb on + strand, within DDA3937_RS02200 at 488.783 kb on + strand, within DDA3937_RS02200 at 488.784 kb on - strand, within DDA3937_RS02200 at 488.784 kb on - strand, within DDA3937_RS02200 at 488.784 kb on - strand, within DDA3937_RS02200 at 488.847 kb on - strand, within DDA3937_RS02200 at 488.847 kb on - strand, within DDA3937_RS02200 at 488.857 kb on + strand, within DDA3937_RS02200 at 488.858 kb on - strand, within DDA3937_RS02200 at 488.858 kb on - strand, within DDA3937_RS02200 at 488.858 kb on - strand, within DDA3937_RS02200 at 488.929 kb on + strand, within DDA3937_RS02200 at 488.930 kb on - strand, within DDA3937_RS02200 at 488.979 kb on + strand, within DDA3937_RS02200 at 488.990 kb on + strand, within DDA3937_RS02200 at 488.991 kb on - strand, within DDA3937_RS02200 at 489.019 kb on + strand, within DDA3937_RS02200 at 489.020 kb on - strand, within DDA3937_RS02200 at 489.020 kb on - strand, within DDA3937_RS02200 at 489.020 kb on - strand at 489.051 kb on + strand, within DDA3937_RS02200 at 489.051 kb on + strand, within DDA3937_RS02200 at 489.052 kb on - strand, within DDA3937_RS02200 at 489.054 kb on + strand, within DDA3937_RS02200 at 489.055 kb on - strand, within DDA3937_RS02200 at 489.055 kb on - strand, within DDA3937_RS02200 at 489.084 kb on + strand, within DDA3937_RS02200 at 489.084 kb on + strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.085 kb on - strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.088 kb on + strand, within DDA3937_RS02200 at 489.089 kb on - strand at 489.089 kb on - strand, within DDA3937_RS02200 at 489.089 kb on - strand, within DDA3937_RS02200 at 489.090 kb on + strand, within DDA3937_RS02200 at 489.091 kb on - strand, within DDA3937_RS02200 at 489.220 kb on + strand, within DDA3937_RS02200 at 489.300 kb on - strand, within DDA3937_RS02200 at 489.382 kb on + strand at 489.383 kb on - strand at 489.383 kb on - strand at 489.383 kb on - strand at 489.402 kb on + strand at 489.403 kb on - strand at 489.544 kb on + strand at 489.545 kb on - strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.584 kb on + strand at 489.585 kb on - strand at 489.585 kb on - strand at 489.587 kb on + strand at 489.587 kb on + strand at 489.587 kb on + strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.588 kb on - strand at 489.610 kb on - strand, within DDA3937_RS02205 at 489.700 kb on + strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.701 kb on - strand, within DDA3937_RS02205 at 489.705 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.713 kb on + strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.714 kb on - strand, within DDA3937_RS02205 at 489.720 kb on + strand, within DDA3937_RS02205 at 489.721 kb on - strand at 489.795 kb on + strand, within DDA3937_RS02205 at 489.796 kb on - strand, within DDA3937_RS02205 at 489.796 kb on - strand, within DDA3937_RS02205 at 489.858 kb on + strand, within DDA3937_RS02205 at 489.859 kb on - strand, within DDA3937_RS02205 at 489.859 kb on - strand, within DDA3937_RS02205 at 489.929 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 489.958 kb on - strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.038 kb on + strand, within DDA3937_RS02205 at 490.039 kb on - strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.040 kb on + strand, within DDA3937_RS02205 at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.174 kb on + strand at 490.175 kb on - strand at 490.190 kb on + strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.191 kb on - strand at 490.197 kb on + strand at 490.253 kb on + strand at 490.356 kb on + strand, within DDA3937_RS02210 at 490.357 kb on - strand, within DDA3937_RS02210 at 490.391 kb on + strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.457 kb on - strand, within DDA3937_RS02210 at 490.503 kb on - strand at 490.554 kb on + strand, within DDA3937_RS02210 at 490.555 kb on - strand, within DDA3937_RS02210 at 490.559 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.570 kb on + strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.571 kb on - strand, within DDA3937_RS02210 at 490.575 kb on - strand, within DDA3937_RS02210 at 490.584 kb on - strand, within DDA3937_RS02210 at 490.587 kb on - strand, within DDA3937_RS02210 at 490.602 kb on + strand, within DDA3937_RS02210 at 490.603 kb on - strand, within DDA3937_RS02210 at 490.649 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.692 kb on + strand, within DDA3937_RS02210 at 490.693 kb on - strand at 490.738 kb on - strand, within DDA3937_RS02210 at 490.748 kb on + strand, within DDA3937_RS02210 at 490.786 kb on - strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.798 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.801 kb on + strand, within DDA3937_RS02210 at 490.802 kb on - strand, within DDA3937_RS02210 at 490.844 kb on + strand at 490.845 kb on - strand at 490.848 kb on - strand at 490.848 kb on - strand at 490.894 kb on + strand at 490.915 kb on + strand at 490.916 kb on - strand at 490.930 kb on + strand at 490.945 kb on - strand at 490.962 kb on + strand at 490.962 kb on + strand at 490.976 kb on - strand at 490.993 kb on - strand at 491.023 kb on + strand at 491.048 kb on - strand at 491.095 kb on + strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.096 kb on - strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.098 kb on + strand, within DDA3937_RS02215 at 491.101 kb on + strand, within DDA3937_RS02215 at 491.108 kb on + strand, within DDA3937_RS02215 at 491.109 kb on - strand, within DDA3937_RS02215 at 491.117 kb on + strand, within DDA3937_RS02215 at 491.170 kb on + strand, within DDA3937_RS02215 at 491.171 kb on - strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.173 kb on + strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.176 kb on - strand, within DDA3937_RS02215 at 491.191 kb on + strand, within DDA3937_RS02215
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 488,651 - -1.8 488,655 + -0.1 488,655 + +0.4 488,655 + -1.4 488,655 + -0.4 488,655 + -0.3 488,783 + DDA3937_RS02200 0.19 -2.2 488,783 + DDA3937_RS02200 0.19 -0.7 488,783 + DDA3937_RS02200 0.19 +0.6 488,783 + DDA3937_RS02200 0.19 -2.6 488,784 - DDA3937_RS02200 0.19 +1.2 488,784 - DDA3937_RS02200 0.19 -2.1 488,784 - DDA3937_RS02200 0.19 -1.5 488,847 - DDA3937_RS02200 0.27 -0.6 488,847 - DDA3937_RS02200 0.27 -0.5 488,857 + DDA3937_RS02200 0.28 -1.5 488,858 - DDA3937_RS02200 0.28 -2.6 488,858 - DDA3937_RS02200 0.28 -3.1 488,858 - DDA3937_RS02200 0.28 -0.9 488,929 + DDA3937_RS02200 0.37 -1.7 488,930 - DDA3937_RS02200 0.37 -0.2 488,979 + DDA3937_RS02200 0.43 -1.3 488,990 + DDA3937_RS02200 0.44 -2.9 488,991 - DDA3937_RS02200 0.45 -0.0 489,019 + DDA3937_RS02200 0.48 -1.9 489,020 - DDA3937_RS02200 0.48 +0.6 489,020 - DDA3937_RS02200 0.48 -1.7 489,020 - +0.6 489,051 + DDA3937_RS02200 0.52 -1.2 489,051 + DDA3937_RS02200 0.52 +0.4 489,052 - DDA3937_RS02200 0.52 +1.6 489,054 + DDA3937_RS02200 0.53 +0.8 489,055 - DDA3937_RS02200 0.53 -0.5 489,055 - DDA3937_RS02200 0.53 -2.5 489,084 + DDA3937_RS02200 0.56 +0.9 489,084 + DDA3937_RS02200 0.56 +2.8 489,085 - DDA3937_RS02200 0.56 -3.0 489,085 - DDA3937_RS02200 0.56 -0.9 489,085 - DDA3937_RS02200 0.56 -0.2 489,085 - DDA3937_RS02200 0.56 -1.9 489,088 + DDA3937_RS02200 0.57 -0.1 489,088 + DDA3937_RS02200 0.57 -2.1 489,088 + DDA3937_RS02200 0.57 +1.6 489,088 + DDA3937_RS02200 0.57 +0.0 489,088 + DDA3937_RS02200 0.57 -1.0 489,088 + DDA3937_RS02200 0.57 -0.9 489,089 - +0.6 489,089 - DDA3937_RS02200 0.57 +3.1 489,089 - DDA3937_RS02200 0.57 -0.2 489,090 + DDA3937_RS02200 0.57 +0.6 489,091 - DDA3937_RS02200 0.57 -1.2 489,220 + DDA3937_RS02200 0.73 +1.2 489,300 - DDA3937_RS02200 0.83 -3.6 489,382 + -2.5 489,383 - -1.0 489,383 - +3.2 489,383 - -1.4 489,402 + -1.5 489,403 - +0.7 489,544 + -1.4 489,545 - +0.2 489,584 + -2.7 489,584 + -1.2 489,584 + -0.9 489,584 + +1.6 489,584 + -2.1 489,585 - -2.9 489,585 - -0.6 489,587 + -2.6 489,587 + -1.0 489,587 + -2.5 489,588 - +0.3 489,588 - -1.8 489,588 - +0.8 489,588 - -1.8 489,588 - -1.7 489,588 - +1.8 489,588 - -1.0 489,588 - -1.5 489,588 - -1.7 489,610 - DDA3937_RS02205 0.11 -1.0 489,700 + DDA3937_RS02205 0.25 +1.5 489,701 - DDA3937_RS02205 0.25 -1.5 489,701 - DDA3937_RS02205 0.25 -1.9 489,701 - DDA3937_RS02205 0.25 +1.9 489,705 + DDA3937_RS02205 0.26 -0.2 489,713 + DDA3937_RS02205 0.27 +0.1 489,713 + DDA3937_RS02205 0.27 +0.8 489,713 + DDA3937_RS02205 0.27 -0.4 489,714 - DDA3937_RS02205 0.27 +0.6 489,714 - DDA3937_RS02205 0.27 -0.2 489,714 - DDA3937_RS02205 0.27 -0.4 489,720 + DDA3937_RS02205 0.28 -3.0 489,721 - +0.6 489,795 + DDA3937_RS02205 0.39 -3.8 489,796 - DDA3937_RS02205 0.40 -2.0 489,796 - DDA3937_RS02205 0.40 -1.4 489,858 + DDA3937_RS02205 0.49 -1.4 489,859 - DDA3937_RS02205 0.49 -1.5 489,859 - DDA3937_RS02205 0.49 -0.7 489,929 - DDA3937_RS02205 0.60 -0.6 489,958 - DDA3937_RS02205 0.64 -1.8 489,958 - DDA3937_RS02205 0.64 -1.4 489,958 - DDA3937_RS02205 0.64 -1.2 490,038 + DDA3937_RS02205 0.76 -1.2 490,038 + DDA3937_RS02205 0.76 +1.2 490,039 - DDA3937_RS02205 0.76 +0.1 490,040 + DDA3937_RS02205 0.77 -0.3 490,040 + DDA3937_RS02205 0.77 -2.7 490,040 + DDA3937_RS02205 0.77 -1.6 490,174 + -2.2 490,174 + +0.6 490,174 + -2.4 490,174 + -0.2 490,175 - -0.4 490,190 + +0.3 490,191 - -0.5 490,191 - -2.7 490,191 - -1.3 490,191 - -1.0 490,191 - +0.8 490,197 + -0.3 490,253 + +2.4 490,356 + DDA3937_RS02210 0.15 -0.6 490,357 - DDA3937_RS02210 0.15 +0.5 490,391 + DDA3937_RS02210 0.20 -0.5 490,457 - DDA3937_RS02210 0.31 +0.1 490,457 - DDA3937_RS02210 0.31 -0.4 490,503 - -0.7 490,554 + DDA3937_RS02210 0.47 -2.9 490,555 - DDA3937_RS02210 0.47 +0.1 490,559 + DDA3937_RS02210 0.48 -0.4 490,570 + DDA3937_RS02210 0.50 -2.3 490,570 + DDA3937_RS02210 0.50 -2.7 490,570 + DDA3937_RS02210 0.50 -1.4 490,571 - DDA3937_RS02210 0.50 -1.5 490,571 - DDA3937_RS02210 0.50 -1.3 490,575 - DDA3937_RS02210 0.50 +0.0 490,584 - DDA3937_RS02210 0.52 +0.1 490,587 - DDA3937_RS02210 0.52 -2.7 490,602 + DDA3937_RS02210 0.55 -1.4 490,603 - DDA3937_RS02210 0.55 -2.4 490,649 + DDA3937_RS02210 0.63 -0.0 490,692 + DDA3937_RS02210 0.70 +1.6 490,692 + DDA3937_RS02210 0.70 -1.9 490,693 - +0.1 490,738 - DDA3937_RS02210 0.77 -0.4 490,748 + DDA3937_RS02210 0.79 +1.9 490,786 - DDA3937_RS02210 0.85 -1.5 490,798 + DDA3937_RS02210 0.87 -1.4 490,798 + DDA3937_RS02210 0.87 +0.3 490,798 + DDA3937_RS02210 0.87 +1.5 490,801 + DDA3937_RS02210 0.87 -0.7 490,801 + DDA3937_RS02210 0.87 -2.5 490,802 - DDA3937_RS02210 0.88 -0.7 490,844 + -0.2 490,845 - -0.9 490,848 - -2.4 490,848 - -1.8 490,894 + +0.6 490,915 + -1.9 490,916 - +1.6 490,930 + +2.5 490,945 - -0.2 490,962 + -2.8 490,962 + -1.5 490,976 - -2.3 490,993 - -1.9 491,023 + +0.0 491,048 - -0.4 491,095 + DDA3937_RS02215 0.17 -1.2 491,096 - DDA3937_RS02215 0.17 -0.9 491,096 - DDA3937_RS02215 0.17 -0.5 491,096 - DDA3937_RS02215 0.17 +0.6 491,098 + DDA3937_RS02215 0.18 +1.6 491,098 + DDA3937_RS02215 0.18 -1.6 491,101 + DDA3937_RS02215 0.18 -1.8 491,108 + DDA3937_RS02215 0.20 -2.1 491,109 - DDA3937_RS02215 0.20 -0.8 491,117 + DDA3937_RS02215 0.21 -0.9 491,170 + DDA3937_RS02215 0.30 -0.8 491,171 - DDA3937_RS02215 0.30 -0.4 491,173 + DDA3937_RS02215 0.30 +1.0 491,173 + DDA3937_RS02215 0.30 +0.5 491,176 - DDA3937_RS02215 0.31 +0.6 491,176 - DDA3937_RS02215 0.31 -0.7 491,176 - DDA3937_RS02215 0.31 -3.4 491,176 - DDA3937_RS02215 0.31 -1.5 491,176 - DDA3937_RS02215 0.31 -0.4 491,191 + DDA3937_RS02215 0.33 -0.2
Or see this region's nucleotide sequence