Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01890 and DDA3937_RS01895 are separated by 27 nucleotides DDA3937_RS01895 and DDA3937_RS01900 overlap by 4 nucleotides DDA3937_RS01900 and DDA3937_RS01905 are separated by 506 nucleotides
DDA3937_RS01890: DDA3937_RS01890 - ABC transporter permease, at 422,460 to 423,404
_RS01890
DDA3937_RS01895: DDA3937_RS01895 - ABC transporter permease, at 423,432 to 424,247
_RS01895
DDA3937_RS01900: DDA3937_RS01900 - ABC transporter ATP-binding protein, at 424,244 to 425,851
_RS01900
DDA3937_RS01905: DDA3937_RS01905 - FAD-dependent oxidoreductase, at 426,358 to 428,049
_RS01905
Position (kb) 424
425
426 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.258 kb on + strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.259 kb on - strand, within DDA3937_RS01890 at 423.330 kb on + strand at 423.330 kb on + strand at 423.330 kb on + strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.331 kb on - strand at 423.423 kb on + strand at 423.424 kb on - strand at 423.424 kb on - strand at 423.796 kb on + strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.797 kb on - strand, within DDA3937_RS01895 at 423.865 kb on + strand, within DDA3937_RS01895 at 423.868 kb on + strand, within DDA3937_RS01895 at 424.211 kb on - strand at 424.211 kb on - strand at 424.226 kb on + strand at 424.226 kb on + strand at 424.319 kb on - strand at 424.324 kb on + strand at 424.324 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.327 kb on + strand at 424.328 kb on - strand at 424.328 kb on - strand at 424.414 kb on + strand, within DDA3937_RS01900 at 424.415 kb on - strand, within DDA3937_RS01900 at 424.421 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.436 kb on - strand, within DDA3937_RS01900 at 424.524 kb on - strand, within DDA3937_RS01900 at 424.708 kb on - strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.871 kb on + strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.872 kb on - strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.873 kb on + strand, within DDA3937_RS01900 at 424.874 kb on - strand, within DDA3937_RS01900 at 424.991 kb on + strand, within DDA3937_RS01900 at 424.991 kb on + strand, within DDA3937_RS01900 at 424.991 kb on + strand at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 424.992 kb on - strand, within DDA3937_RS01900 at 425.115 kb on + strand, within DDA3937_RS01900 at 425.115 kb on + strand, within DDA3937_RS01900 at 425.116 kb on - strand, within DDA3937_RS01900 at 425.116 kb on - strand, within DDA3937_RS01900 at 425.192 kb on - strand, within DDA3937_RS01900 at 425.373 kb on + strand, within DDA3937_RS01900 at 425.373 kb on + strand, within DDA3937_RS01900 at 425.373 kb on + strand, within DDA3937_RS01900 at 425.373 kb on + strand, within DDA3937_RS01900 at 425.373 kb on + strand, within DDA3937_RS01900 at 425.388 kb on + strand, within DDA3937_RS01900 at 425.388 kb on + strand, within DDA3937_RS01900 at 425.389 kb on - strand, within DDA3937_RS01900 at 425.389 kb on - strand, within DDA3937_RS01900 at 425.507 kb on - strand, within DDA3937_RS01900 at 425.636 kb on + strand, within DDA3937_RS01900 at 425.637 kb on - strand, within DDA3937_RS01900 at 425.637 kb on - strand, within DDA3937_RS01900 at 425.637 kb on - strand, within DDA3937_RS01900 at 425.637 kb on - strand, within DDA3937_RS01900 at 425.637 kb on - strand, within DDA3937_RS01900 at 425.637 kb on - strand, within DDA3937_RS01900 at 425.644 kb on + strand, within DDA3937_RS01900 at 425.710 kb on + strand at 425.710 kb on + strand at 425.710 kb on + strand at 425.762 kb on + strand at 425.762 kb on + strand at 425.762 kb on + strand at 425.762 kb on + strand at 425.763 kb on - strand at 425.763 kb on - strand at 425.763 kb on - strand at 425.763 kb on - strand at 425.763 kb on - strand at 425.857 kb on + strand at 425.857 kb on + strand at 425.886 kb on - strand at 425.886 kb on - strand at 425.886 kb on - strand at 425.886 kb on - strand at 425.886 kb on - strand at 425.927 kb on + strand at 425.927 kb on + strand at 425.927 kb on + strand at 425.927 kb on + strand at 425.927 kb on + strand at 425.927 kb on + strand at 425.928 kb on - strand at 425.928 kb on - strand at 425.928 kb on - strand at 425.928 kb on - strand at 425.928 kb on - strand at 425.928 kb on - strand at 425.928 kb on - strand at 425.992 kb on + strand at 425.993 kb on - strand at 425.993 kb on - strand at 426.019 kb on + strand at 426.019 kb on + strand at 426.036 kb on + strand at 426.037 kb on - strand at 426.037 kb on - strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.099 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.103 kb on + strand at 426.104 kb on - strand at 426.104 kb on - strand at 426.104 kb on - strand at 426.104 kb on - strand at 426.104 kb on - strand at 426.104 kb on - strand at 426.126 kb on + strand at 426.127 kb on - strand at 426.127 kb on - strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.171 kb on + strand at 426.172 kb on - strand at 426.172 kb on - strand at 426.172 kb on - strand at 426.172 kb on - strand at 426.172 kb on - strand at 426.216 kb on + strand at 426.216 kb on + strand at 426.216 kb on + strand at 426.216 kb on + strand at 426.217 kb on - strand at 426.217 kb on - strand at 426.217 kb on - strand at 426.237 kb on + strand at 426.237 kb on + strand at 426.248 kb on + strand at 426.249 kb on - strand at 426.249 kb on - strand at 426.253 kb on + strand at 426.254 kb on - strand at 426.256 kb on + strand at 426.256 kb on + strand at 426.256 kb on + strand at 426.257 kb on - strand at 426.257 kb on - strand at 426.283 kb on + strand at 426.283 kb on + strand at 426.284 kb on - strand at 426.284 kb on - strand at 426.284 kb on - strand at 426.288 kb on + strand at 426.288 kb on + strand at 426.289 kb on - strand at 426.298 kb on + strand at 426.299 kb on - strand at 426.301 kb on + strand at 426.301 kb on + strand at 426.308 kb on - strand at 426.310 kb on - strand at 426.310 kb on - strand at 426.312 kb on + strand at 426.312 kb on + strand at 426.312 kb on + strand at 426.313 kb on - strand at 426.319 kb on - strand at 426.326 kb on + strand at 426.327 kb on - strand at 426.331 kb on + strand at 426.332 kb on - strand at 426.355 kb on + strand at 426.355 kb on + strand at 426.355 kb on + strand at 426.355 kb on + strand at 426.355 kb on + strand at 426.355 kb on + strand at 426.356 kb on - strand at 426.356 kb on - strand at 426.356 kb on - strand at 426.356 kb on - strand at 426.357 kb on + strand at 426.358 kb on - strand at 426.358 kb on - strand at 426.358 kb on - strand at 426.358 kb on - strand at 426.358 kb on - strand at 426.358 kb on - strand at 426.413 kb on - strand at 426.413 kb on - strand at 426.418 kb on + strand at 426.419 kb on - strand at 426.419 kb on - strand at 426.464 kb on - strand at 426.502 kb on - strand at 426.503 kb on + strand at 426.504 kb on - strand at 426.564 kb on + strand, within DDA3937_RS01905 at 426.564 kb on + strand, within DDA3937_RS01905 at 426.564 kb on + strand, within DDA3937_RS01905 at 426.565 kb on - strand, within DDA3937_RS01905 at 426.567 kb on + strand, within DDA3937_RS01905 at 426.567 kb on + strand, within DDA3937_RS01905 at 426.567 kb on + strand, within DDA3937_RS01905 at 426.567 kb on + strand, within DDA3937_RS01905 at 426.567 kb on + strand, within DDA3937_RS01905 at 426.568 kb on - strand, within DDA3937_RS01905 at 426.568 kb on - strand, within DDA3937_RS01905 at 426.594 kb on + strand, within DDA3937_RS01905 at 426.697 kb on + strand, within DDA3937_RS01905 at 426.698 kb on - strand, within DDA3937_RS01905 at 426.717 kb on + strand, within DDA3937_RS01905 at 426.718 kb on - strand, within DDA3937_RS01905 at 426.718 kb on - strand, within DDA3937_RS01905 at 426.759 kb on + strand, within DDA3937_RS01905 at 426.759 kb on + strand, within DDA3937_RS01905 at 426.760 kb on - strand, within DDA3937_RS01905 at 426.789 kb on + strand, within DDA3937_RS01905 at 426.789 kb on + strand, within DDA3937_RS01905 at 426.790 kb on - strand, within DDA3937_RS01905 at 426.790 kb on - strand, within DDA3937_RS01905 at 426.821 kb on + strand, within DDA3937_RS01905 at 426.833 kb on + strand, within DDA3937_RS01905 at 426.833 kb on + strand, within DDA3937_RS01905 at 426.833 kb on + strand, within DDA3937_RS01905 at 426.834 kb on - strand, within DDA3937_RS01905 at 426.834 kb on - strand, within DDA3937_RS01905 at 426.834 kb on - strand, within DDA3937_RS01905 at 426.834 kb on - strand, within DDA3937_RS01905 at 426.834 kb on - strand, within DDA3937_RS01905 at 426.834 kb on - strand, within DDA3937_RS01905
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 423,258 + DDA3937_RS01890 0.84 -1.8 423,258 + DDA3937_RS01890 0.84 +2.2 423,258 + DDA3937_RS01890 0.84 -1.0 423,258 + DDA3937_RS01890 0.84 -0.2 423,258 + DDA3937_RS01890 0.84 -0.5 423,258 + DDA3937_RS01890 0.84 -0.7 423,258 + DDA3937_RS01890 0.84 -0.1 423,259 - DDA3937_RS01890 0.85 -2.6 423,259 - DDA3937_RS01890 0.85 -0.3 423,259 - DDA3937_RS01890 0.85 -1.2 423,259 - DDA3937_RS01890 0.85 -1.3 423,259 - DDA3937_RS01890 0.85 -0.3 423,259 - DDA3937_RS01890 0.85 -4.1 423,259 - DDA3937_RS01890 0.85 +0.2 423,330 + -0.2 423,330 + -1.6 423,330 + +1.4 423,331 - -1.6 423,331 - -0.6 423,331 - -0.1 423,331 - -1.2 423,423 + -1.0 423,424 - +0.1 423,424 - +0.0 423,796 + DDA3937_RS01895 0.45 +0.5 423,797 - DDA3937_RS01895 0.45 -0.4 423,797 - DDA3937_RS01895 0.45 -2.5 423,865 + DDA3937_RS01895 0.53 -1.4 423,868 + DDA3937_RS01895 0.53 +0.0 424,211 - -0.7 424,211 - -2.2 424,226 + +0.8 424,226 + +3.0 424,319 - -1.2 424,324 + -1.6 424,324 + -0.5 424,327 + -2.8 424,327 + +1.4 424,327 + -1.2 424,328 - -1.2 424,328 - -2.2 424,414 + DDA3937_RS01900 0.11 -1.3 424,415 - DDA3937_RS01900 0.11 +1.9 424,421 - DDA3937_RS01900 0.11 -1.0 424,436 - DDA3937_RS01900 0.12 -2.1 424,436 - DDA3937_RS01900 0.12 +0.6 424,436 - DDA3937_RS01900 0.12 -0.7 424,436 - DDA3937_RS01900 0.12 -2.1 424,436 - DDA3937_RS01900 0.12 -1.0 424,436 - DDA3937_RS01900 0.12 -1.1 424,524 - DDA3937_RS01900 0.17 -1.8 424,708 - DDA3937_RS01900 0.29 -0.6 424,871 + DDA3937_RS01900 0.39 -1.0 424,871 + DDA3937_RS01900 0.39 +0.6 424,871 + DDA3937_RS01900 0.39 -1.6 424,871 + DDA3937_RS01900 0.39 -1.0 424,871 + DDA3937_RS01900 0.39 -1.4 424,871 + DDA3937_RS01900 0.39 -0.7 424,872 - DDA3937_RS01900 0.39 -0.4 424,872 - DDA3937_RS01900 0.39 +1.6 424,872 - DDA3937_RS01900 0.39 -0.6 424,872 - DDA3937_RS01900 0.39 +1.6 424,873 + DDA3937_RS01900 0.39 -2.2 424,873 + DDA3937_RS01900 0.39 -0.4 424,873 + DDA3937_RS01900 0.39 +0.3 424,874 - DDA3937_RS01900 0.39 +2.8 424,991 + DDA3937_RS01900 0.46 +1.1 424,991 + DDA3937_RS01900 0.46 +0.8 424,991 + +0.0 424,992 - DDA3937_RS01900 0.47 -2.2 424,992 - DDA3937_RS01900 0.47 -1.6 424,992 - DDA3937_RS01900 0.47 -1.3 424,992 - DDA3937_RS01900 0.47 -2.1 425,115 + DDA3937_RS01900 0.54 -0.7 425,115 + DDA3937_RS01900 0.54 -1.5 425,116 - DDA3937_RS01900 0.54 -3.1 425,116 - DDA3937_RS01900 0.54 -1.4 425,192 - DDA3937_RS01900 0.59 -1.3 425,373 + DDA3937_RS01900 0.70 -0.1 425,373 + DDA3937_RS01900 0.70 -3.3 425,373 + DDA3937_RS01900 0.70 -2.0 425,373 + DDA3937_RS01900 0.70 -0.0 425,373 + DDA3937_RS01900 0.70 -1.6 425,388 + DDA3937_RS01900 0.71 +0.7 425,388 + DDA3937_RS01900 0.71 -1.8 425,389 - DDA3937_RS01900 0.71 -1.6 425,389 - DDA3937_RS01900 0.71 +0.8 425,507 - DDA3937_RS01900 0.79 -1.4 425,636 + DDA3937_RS01900 0.87 -1.6 425,637 - DDA3937_RS01900 0.87 -0.1 425,637 - DDA3937_RS01900 0.87 -1.2 425,637 - DDA3937_RS01900 0.87 -3.0 425,637 - DDA3937_RS01900 0.87 -2.9 425,637 - DDA3937_RS01900 0.87 -0.7 425,637 - DDA3937_RS01900 0.87 -1.6 425,644 + DDA3937_RS01900 0.87 -1.2 425,710 + -0.2 425,710 + +1.5 425,710 + -2.5 425,762 + +1.2 425,762 + -1.7 425,762 + -0.7 425,762 + -0.1 425,763 - -2.3 425,763 - -1.2 425,763 - -0.4 425,763 - -0.4 425,763 - -2.0 425,857 + -0.1 425,857 + -1.2 425,886 - -2.8 425,886 - -1.8 425,886 - -2.0 425,886 - -1.0 425,886 - -1.4 425,927 + +2.4 425,927 + +0.9 425,927 + -1.7 425,927 + +0.5 425,927 + +1.3 425,927 + +0.4 425,928 - +0.7 425,928 - -0.3 425,928 - -1.0 425,928 - -0.3 425,928 - -3.7 425,928 - +0.6 425,928 - +1.0 425,992 + -2.5 425,993 - -0.4 425,993 - -1.5 426,019 + -1.0 426,019 + +2.0 426,036 + -0.1 426,037 - -2.2 426,037 - +0.2 426,099 + -2.7 426,099 + +1.6 426,099 + -0.3 426,099 + +0.5 426,099 + -0.7 426,099 + -2.8 426,099 + -1.4 426,099 + +1.4 426,103 + -2.0 426,103 + +0.9 426,103 + -1.1 426,103 + -0.6 426,103 + -1.0 426,103 + -1.0 426,103 + +0.5 426,103 + +0.6 426,103 + -0.7 426,104 - +1.3 426,104 - -1.8 426,104 - +0.3 426,104 - -1.8 426,104 - -2.4 426,104 - +1.8 426,126 + -1.2 426,127 - -0.2 426,127 - -3.1 426,171 + -2.1 426,171 + +1.6 426,171 + -1.3 426,171 + +0.0 426,171 + -0.0 426,171 + +0.5 426,171 + -1.1 426,171 + -2.6 426,171 + -2.9 426,172 - +1.0 426,172 - -2.0 426,172 - -1.4 426,172 - +1.9 426,172 - -1.4 426,216 + +0.0 426,216 + -2.1 426,216 + -0.0 426,216 + -1.8 426,217 - +1.1 426,217 - -2.2 426,217 - -1.6 426,237 + +2.5 426,237 + +1.2 426,248 + -2.2 426,249 - -3.2 426,249 - -1.0 426,253 + +1.7 426,254 - -2.5 426,256 + +0.2 426,256 + +1.9 426,256 + -0.4 426,257 - -3.2 426,257 - -2.1 426,283 + +0.3 426,283 + -3.3 426,284 - -2.9 426,284 - -2.5 426,284 - +1.2 426,288 + +1.2 426,288 + -2.5 426,289 - +1.6 426,298 + -0.4 426,299 - -1.5 426,301 + -0.7 426,301 + -1.7 426,308 - +1.8 426,310 - -1.4 426,310 - -3.1 426,312 + +0.6 426,312 + +1.0 426,312 + -0.7 426,313 - +1.8 426,319 - +0.2 426,326 + -1.5 426,327 - +3.6 426,331 + -1.5 426,332 - -1.3 426,355 + +3.9 426,355 + +0.4 426,355 + -3.6 426,355 + +0.9 426,355 + -1.3 426,355 + -0.2 426,356 - -0.5 426,356 - -1.2 426,356 - +2.2 426,356 - -0.7 426,357 + -2.5 426,358 - +0.0 426,358 - -3.0 426,358 - -1.8 426,358 - -2.2 426,358 - -0.0 426,358 - -0.7 426,413 - +1.5 426,413 - -1.0 426,418 + -2.1 426,419 - -1.8 426,419 - -0.7 426,464 - +0.6 426,502 - -0.1 426,503 + -1.1 426,504 - -2.8 426,564 + DDA3937_RS01905 0.12 +1.0 426,564 + DDA3937_RS01905 0.12 -1.8 426,564 + DDA3937_RS01905 0.12 -3.4 426,565 - DDA3937_RS01905 0.12 -0.7 426,567 + DDA3937_RS01905 0.12 -0.2 426,567 + DDA3937_RS01905 0.12 -1.4 426,567 + DDA3937_RS01905 0.12 +0.1 426,567 + DDA3937_RS01905 0.12 +0.5 426,567 + DDA3937_RS01905 0.12 +2.1 426,568 - DDA3937_RS01905 0.12 -2.0 426,568 - DDA3937_RS01905 0.12 -2.5 426,594 + DDA3937_RS01905 0.14 -1.8 426,697 + DDA3937_RS01905 0.20 +1.4 426,698 - DDA3937_RS01905 0.20 -1.8 426,717 + DDA3937_RS01905 0.21 -3.2 426,718 - DDA3937_RS01905 0.21 +2.9 426,718 - DDA3937_RS01905 0.21 -0.2 426,759 + DDA3937_RS01905 0.24 +1.9 426,759 + DDA3937_RS01905 0.24 +0.8 426,760 - DDA3937_RS01905 0.24 -1.1 426,789 + DDA3937_RS01905 0.25 -1.6 426,789 + DDA3937_RS01905 0.25 +0.9 426,790 - DDA3937_RS01905 0.26 -0.7 426,790 - DDA3937_RS01905 0.26 -1.6 426,821 + DDA3937_RS01905 0.27 +0.9 426,833 + DDA3937_RS01905 0.28 -0.4 426,833 + DDA3937_RS01905 0.28 -0.7 426,833 + DDA3937_RS01905 0.28 +0.3 426,834 - DDA3937_RS01905 0.28 -1.0 426,834 - DDA3937_RS01905 0.28 +1.0 426,834 - DDA3937_RS01905 0.28 +0.8 426,834 - DDA3937_RS01905 0.28 -0.5 426,834 - DDA3937_RS01905 0.28 -2.3 426,834 - DDA3937_RS01905 0.28 -0.2
Or see this region's nucleotide sequence