Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01795 and DDA3937_RS01800 are separated by 187 nucleotides DDA3937_RS01800 and DDA3937_RS01805 are separated by 466 nucleotides
DDA3937_RS01795: DDA3937_RS01795 - 2,5-didehydrogluconate reductase DkgA, at 398,594 to 399,439
_RS01795
DDA3937_RS01800: DDA3937_RS01800 - alcohol dehydrogenase, at 399,627 to 400,790
_RS01800
DDA3937_RS01805: DDA3937_RS01805 - AraC family transcriptional regulator, at 401,257 to 402,168
_RS01805
Position (kb) 399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 398.678 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.678 kb on + strand at 398.679 kb on - strand, within DDA3937_RS01795 at 399.026 kb on - strand, within DDA3937_RS01795 at 399.061 kb on + strand, within DDA3937_RS01795 at 399.093 kb on + strand, within DDA3937_RS01795 at 399.093 kb on + strand, within DDA3937_RS01795 at 399.093 kb on + strand, within DDA3937_RS01795 at 399.094 kb on - strand, within DDA3937_RS01795 at 399.129 kb on + strand, within DDA3937_RS01795 at 399.141 kb on + strand, within DDA3937_RS01795 at 399.141 kb on + strand, within DDA3937_RS01795 at 399.142 kb on - strand, within DDA3937_RS01795 at 399.229 kb on + strand, within DDA3937_RS01795 at 399.258 kb on - strand, within DDA3937_RS01795 at 399.258 kb on - strand, within DDA3937_RS01795 at 399.288 kb on + strand, within DDA3937_RS01795 at 399.288 kb on + strand, within DDA3937_RS01795 at 399.289 kb on - strand, within DDA3937_RS01795 at 399.292 kb on + strand, within DDA3937_RS01795 at 399.386 kb on + strand at 399.386 kb on + strand at 399.400 kb on + strand at 399.401 kb on - strand at 399.401 kb on - strand at 399.419 kb on - strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.454 kb on + strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.455 kb on - strand at 399.598 kb on + strand at 399.599 kb on - strand at 399.605 kb on - strand at 399.605 kb on - strand at 399.605 kb on - strand at 399.643 kb on + strand at 399.643 kb on + strand at 399.644 kb on - strand at 399.644 kb on - strand at 399.644 kb on - strand at 399.871 kb on + strand, within DDA3937_RS01800 at 399.872 kb on - strand, within DDA3937_RS01800 at 399.933 kb on - strand, within DDA3937_RS01800 at 400.078 kb on + strand, within DDA3937_RS01800 at 400.078 kb on + strand, within DDA3937_RS01800 at 400.078 kb on + strand, within DDA3937_RS01800 at 400.079 kb on - strand at 400.079 kb on - strand, within DDA3937_RS01800 at 400.079 kb on - strand, within DDA3937_RS01800 at 400.079 kb on - strand, within DDA3937_RS01800 at 400.183 kb on + strand, within DDA3937_RS01800 at 400.184 kb on - strand, within DDA3937_RS01800 at 400.184 kb on - strand, within DDA3937_RS01800 at 400.197 kb on - strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.249 kb on + strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand, within DDA3937_RS01800 at 400.250 kb on - strand at 400.462 kb on + strand, within DDA3937_RS01800 at 400.463 kb on - strand, within DDA3937_RS01800 at 400.463 kb on - strand at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.615 kb on - strand, within DDA3937_RS01800 at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.769 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.807 kb on + strand at 400.807 kb on + strand at 400.807 kb on + strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.840 kb on - strand at 400.840 kb on - strand at 400.863 kb on + strand at 400.863 kb on + strand at 400.864 kb on - strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.867 kb on - strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.879 kb on - strand at 400.918 kb on + strand at 400.918 kb on + strand at 400.919 kb on - strand at 400.955 kb on + strand at 400.956 kb on - strand at 401.001 kb on + strand at 401.066 kb on - strand at 401.080 kb on + strand at 401.080 kb on + strand at 401.080 kb on + strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.082 kb on + strand at 401.082 kb on + strand at 401.082 kb on + strand at 401.119 kb on - strand at 401.166 kb on + strand at 401.167 kb on - strand at 401.207 kb on + strand at 401.216 kb on + strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.240 kb on + strand at 401.243 kb on + strand at 401.257 kb on - strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.306 kb on - strand at 401.306 kb on - strand at 401.306 kb on - strand at 401.359 kb on + strand, within DDA3937_RS01805 at 401.359 kb on + strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.396 kb on - strand, within DDA3937_RS01805 at 401.396 kb on - strand, within DDA3937_RS01805 at 401.440 kb on + strand, within DDA3937_RS01805 at 401.441 kb on - strand, within DDA3937_RS01805 at 401.441 kb on - strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.480 kb on - strand, within DDA3937_RS01805 at 401.480 kb on - strand, within DDA3937_RS01805 at 401.569 kb on - strand, within DDA3937_RS01805 at 401.764 kb on + strand, within DDA3937_RS01805 at 401.764 kb on + strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 398,678 + -2.7 398,678 + +0.6 398,678 + +1.0 398,678 + -0.2 398,678 + -2.8 398,679 - DDA3937_RS01795 0.10 +1.4 399,026 - DDA3937_RS01795 0.51 +2.0 399,061 + DDA3937_RS01795 0.55 -0.3 399,093 + DDA3937_RS01795 0.59 +1.4 399,093 + DDA3937_RS01795 0.59 +0.7 399,093 + DDA3937_RS01795 0.59 +0.3 399,094 - DDA3937_RS01795 0.59 +0.0 399,129 + DDA3937_RS01795 0.63 -2.6 399,141 + DDA3937_RS01795 0.65 +0.2 399,141 + DDA3937_RS01795 0.65 -1.0 399,142 - DDA3937_RS01795 0.65 +2.1 399,229 + DDA3937_RS01795 0.75 +0.2 399,258 - DDA3937_RS01795 0.78 +1.0 399,258 - DDA3937_RS01795 0.78 -1.2 399,288 + DDA3937_RS01795 0.82 -1.6 399,288 + DDA3937_RS01795 0.82 -0.9 399,289 - DDA3937_RS01795 0.82 +1.3 399,292 + DDA3937_RS01795 0.83 -1.4 399,386 + -2.7 399,386 + +2.0 399,400 + -1.0 399,401 - +2.1 399,401 - -2.1 399,419 - -1.7 399,454 + -1.7 399,454 + -0.9 399,454 + +1.9 399,454 + +0.1 399,454 + -2.6 399,454 + -3.0 399,454 + -2.9 399,454 + +1.5 399,454 + +0.3 399,454 + +0.6 399,454 + +2.4 399,455 - +0.4 399,455 - -1.8 399,455 - -1.2 399,455 - +0.6 399,455 - +0.3 399,455 - -2.4 399,455 - -2.1 399,455 - +0.7 399,455 - +0.0 399,455 - -0.1 399,598 + -2.7 399,599 - -1.2 399,605 - -0.4 399,605 - +2.7 399,605 - -0.4 399,643 + -2.9 399,643 + -0.7 399,644 - +0.4 399,644 - +0.8 399,644 - -1.6 399,871 + DDA3937_RS01800 0.21 +1.1 399,872 - DDA3937_RS01800 0.21 +0.9 399,933 - DDA3937_RS01800 0.26 +0.8 400,078 + DDA3937_RS01800 0.39 -0.7 400,078 + DDA3937_RS01800 0.39 -0.7 400,078 + DDA3937_RS01800 0.39 -1.6 400,079 - +0.0 400,079 - DDA3937_RS01800 0.39 +0.3 400,079 - DDA3937_RS01800 0.39 +0.8 400,079 - DDA3937_RS01800 0.39 -0.2 400,183 + DDA3937_RS01800 0.48 +0.8 400,184 - DDA3937_RS01800 0.48 -0.8 400,184 - DDA3937_RS01800 0.48 -2.9 400,197 - DDA3937_RS01800 0.49 -1.1 400,249 + DDA3937_RS01800 0.53 -3.2 400,249 + DDA3937_RS01800 0.53 -2.4 400,249 + DDA3937_RS01800 0.53 -1.4 400,249 + DDA3937_RS01800 0.53 -1.4 400,250 - DDA3937_RS01800 0.54 -2.4 400,250 - DDA3937_RS01800 0.54 -2.8 400,250 - DDA3937_RS01800 0.54 -0.2 400,250 - DDA3937_RS01800 0.54 -3.1 400,250 - +0.6 400,462 + DDA3937_RS01800 0.72 -2.3 400,463 - DDA3937_RS01800 0.72 +0.0 400,463 - +0.0 400,614 + DDA3937_RS01800 0.85 -0.7 400,614 + DDA3937_RS01800 0.85 -0.7 400,614 + DDA3937_RS01800 0.85 +0.6 400,614 + DDA3937_RS01800 0.85 -2.1 400,614 + DDA3937_RS01800 0.85 -0.5 400,615 - DDA3937_RS01800 0.85 +3.3 400,684 + -1.6 400,684 + -0.7 400,684 + +1.6 400,684 + -3.1 400,684 + -0.6 400,685 - -1.7 400,685 - -1.2 400,685 - -0.8 400,685 - -1.4 400,769 + -1.6 400,796 + -2.0 400,796 + +0.7 400,796 + +1.3 400,796 + -0.4 400,797 - -1.9 400,797 - -1.0 400,797 - -0.7 400,797 - -2.5 400,807 + +0.2 400,807 + -0.7 400,807 + -3.0 400,808 - -0.9 400,808 - -0.4 400,808 - -0.7 400,808 - -0.1 400,840 - +1.7 400,840 - -2.5 400,863 + -0.1 400,863 + -1.9 400,864 - +0.6 400,866 + -0.6 400,866 + -0.3 400,866 + -1.7 400,866 + +1.1 400,867 - -3.1 400,872 + -1.0 400,872 + -0.5 400,872 + -1.1 400,872 + -3.0 400,872 + -1.5 400,873 - -0.1 400,873 - -1.0 400,873 - +0.5 400,873 - -2.8 400,873 - -1.0 400,873 - -2.4 400,873 - -1.4 400,879 - -2.2 400,918 + -1.7 400,918 + +1.7 400,919 - -0.5 400,955 + -0.4 400,956 - +0.6 401,001 + -1.9 401,066 - +0.9 401,080 + +1.6 401,080 + -0.4 401,080 + -1.0 401,081 - +1.5 401,081 - -2.7 401,081 - -1.1 401,081 - -3.5 401,081 - +0.1 401,082 + -0.6 401,082 + +0.0 401,082 + -1.4 401,119 - -0.7 401,166 + -1.4 401,167 - +1.3 401,207 + -1.2 401,216 + -2.0 401,217 - +2.0 401,217 - +0.8 401,217 - +0.6 401,217 - +0.9 401,218 + +1.3 401,218 + -1.7 401,218 + -1.0 401,218 + -0.5 401,218 + -3.3 401,218 + +1.6 401,218 + -1.6 401,218 + -3.8 401,218 + -1.9 401,218 + -2.1 401,218 + -1.3 401,218 + -0.1 401,218 + -1.0 401,218 + -0.4 401,218 + -1.3 401,218 + -0.8 401,218 + +0.7 401,218 + -2.7 401,218 + +0.6 401,218 + -0.7 401,218 + -2.3 401,218 + -1.0 401,218 + -2.4 401,218 + -1.2 401,218 + -3.3 401,218 + -0.6 401,218 + -0.6 401,218 + -2.1 401,218 + -3.6 401,218 + -2.3 401,218 + -2.3 401,218 + -0.7 401,219 - -0.1 401,219 - +3.0 401,219 - -1.5 401,219 - +2.3 401,219 - -1.2 401,219 - -1.0 401,219 - +1.1 401,219 - -1.7 401,219 - -1.2 401,219 - +0.6 401,219 - +1.3 401,219 - -0.2 401,219 - -0.1 401,219 - +0.4 401,219 - +0.4 401,219 - -4.0 401,219 - -3.1 401,219 - +1.5 401,219 - +1.2 401,219 - -0.7 401,219 - -1.7 401,219 - -1.4 401,219 - -0.5 401,219 - -1.3 401,219 - -0.4 401,219 - +0.3 401,219 - -1.5 401,219 - +1.6 401,219 - +0.0 401,219 - +3.8 401,219 - -0.1 401,219 - -0.4 401,219 - -0.9 401,219 - -2.2 401,219 - -0.8 401,219 - -0.4 401,219 - -0.3 401,219 - +0.1 401,219 - +1.3 401,240 + -1.1 401,243 + -3.8 401,257 - +0.1 401,305 + -0.9 401,305 + +0.8 401,305 + -1.3 401,305 + -1.7 401,306 - +1.8 401,306 - -3.5 401,306 - -1.3 401,359 + DDA3937_RS01805 0.11 -3.0 401,359 + DDA3937_RS01805 0.11 +1.9 401,360 - DDA3937_RS01805 0.11 +0.9 401,360 - DDA3937_RS01805 0.11 +1.7 401,360 - DDA3937_RS01805 0.11 -2.8 401,360 - DDA3937_RS01805 0.11 +1.7 401,395 + DDA3937_RS01805 0.15 -1.4 401,395 + DDA3937_RS01805 0.15 +3.1 401,395 + DDA3937_RS01805 0.15 +2.1 401,395 + DDA3937_RS01805 0.15 -1.9 401,395 + DDA3937_RS01805 0.15 -1.7 401,395 + DDA3937_RS01805 0.15 -1.0 401,396 - DDA3937_RS01805 0.15 +0.5 401,396 - DDA3937_RS01805 0.15 +0.4 401,440 + DDA3937_RS01805 0.20 -1.6 401,441 - DDA3937_RS01805 0.20 -0.3 401,441 - DDA3937_RS01805 0.20 -1.0 401,479 + DDA3937_RS01805 0.24 +0.6 401,479 + DDA3937_RS01805 0.24 -2.9 401,479 + DDA3937_RS01805 0.24 +2.0 401,479 + DDA3937_RS01805 0.24 -2.1 401,479 + DDA3937_RS01805 0.24 +0.3 401,479 + DDA3937_RS01805 0.24 +0.6 401,479 + DDA3937_RS01805 0.24 +1.2 401,479 + DDA3937_RS01805 0.24 -2.2 401,479 + DDA3937_RS01805 0.24 +0.4 401,480 - DDA3937_RS01805 0.24 -0.0 401,480 - DDA3937_RS01805 0.24 -1.9 401,569 - DDA3937_RS01805 0.34 +0.1 401,764 + DDA3937_RS01805 0.56 +1.9 401,764 + DDA3937_RS01805 0.56 -1.0 401,765 - DDA3937_RS01805 0.56 -2.0 401,765 - DDA3937_RS01805 0.56 -3.9 401,765 - DDA3937_RS01805 0.56 -0.9
Or see this region's nucleotide sequence