Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01765 and DDA3937_RS01770 are separated by 12 nucleotides DDA3937_RS01770 and DDA3937_RS01775 are separated by 50 nucleotides DDA3937_RS01775 and DDA3937_RS01780 are separated by 277 nucleotides
DDA3937_RS01765: DDA3937_RS01765 - DNA topoisomerase IV subunit B, at 390,060 to 391,955
_RS01765
DDA3937_RS01770: DDA3937_RS01770 - LysR family transcriptional regulator, at 391,968 to 392,864
_RS01770
DDA3937_RS01775: DDA3937_RS01775 - NAD(P)H-dependent oxidoreductase, at 392,915 to 393,496
_RS01775
DDA3937_RS01780: DDA3937_RS01780 - DNA topoisomerase IV subunit A, at 393,774 to 396,050
_RS01780
Position (kb) 391
392
393 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 392.161 kb on + strand, within DDA3937_RS01770 at 392.162 kb on - strand, within DDA3937_RS01770 at 392.162 kb on - strand, within DDA3937_RS01770 at 392.225 kb on - strand, within DDA3937_RS01770 at 392.330 kb on + strand, within DDA3937_RS01770 at 392.330 kb on + strand, within DDA3937_RS01770 at 392.330 kb on + strand, within DDA3937_RS01770 at 392.331 kb on - strand, within DDA3937_RS01770 at 392.331 kb on - strand, within DDA3937_RS01770 at 392.348 kb on + strand, within DDA3937_RS01770 at 392.364 kb on - strand, within DDA3937_RS01770 at 392.385 kb on - strand, within DDA3937_RS01770 at 392.481 kb on + strand, within DDA3937_RS01770 at 392.482 kb on - strand, within DDA3937_RS01770 at 392.499 kb on - strand, within DDA3937_RS01770 at 392.565 kb on - strand, within DDA3937_RS01770 at 392.598 kb on + strand, within DDA3937_RS01770 at 392.598 kb on + strand, within DDA3937_RS01770 at 392.598 kb on + strand, within DDA3937_RS01770 at 392.598 kb on + strand, within DDA3937_RS01770 at 392.599 kb on - strand, within DDA3937_RS01770 at 392.599 kb on - strand, within DDA3937_RS01770 at 392.599 kb on - strand, within DDA3937_RS01770 at 392.602 kb on - strand, within DDA3937_RS01770 at 392.677 kb on + strand, within DDA3937_RS01770 at 392.677 kb on + strand, within DDA3937_RS01770 at 392.677 kb on + strand, within DDA3937_RS01770 at 392.677 kb on + strand, within DDA3937_RS01770 at 392.677 kb on + strand, within DDA3937_RS01770 at 392.678 kb on - strand, within DDA3937_RS01770 at 392.678 kb on - strand, within DDA3937_RS01770 at 392.785 kb on - strand at 392.862 kb on + strand at 392.862 kb on + strand at 392.863 kb on - strand at 392.863 kb on - strand at 392.892 kb on - strand at 392.897 kb on - strand at 392.999 kb on - strand, within DDA3937_RS01775 at 392.999 kb on - strand, within DDA3937_RS01775 at 392.999 kb on - strand, within DDA3937_RS01775 at 393.054 kb on + strand, within DDA3937_RS01775 at 393.054 kb on + strand, within DDA3937_RS01775 at 393.055 kb on - strand, within DDA3937_RS01775 at 393.141 kb on + strand, within DDA3937_RS01775 at 393.141 kb on + strand, within DDA3937_RS01775 at 393.141 kb on + strand, within DDA3937_RS01775 at 393.142 kb on - strand, within DDA3937_RS01775 at 393.142 kb on - strand, within DDA3937_RS01775 at 393.217 kb on - strand, within DDA3937_RS01775 at 393.255 kb on + strand, within DDA3937_RS01775 at 393.303 kb on + strand, within DDA3937_RS01775 at 393.304 kb on - strand, within DDA3937_RS01775 at 393.355 kb on - strand, within DDA3937_RS01775 at 393.485 kb on + strand at 393.486 kb on - strand at 393.490 kb on + strand at 393.491 kb on - strand at 393.491 kb on - strand at 393.491 kb on - strand at 393.491 kb on - strand at 393.491 kb on - strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.522 kb on + strand at 393.523 kb on - strand at 393.523 kb on - strand at 393.523 kb on - strand at 393.523 kb on - strand at 393.546 kb on - strand at 393.546 kb on - strand at 393.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 392,161 + DDA3937_RS01770 0.22 -2.3 392,162 - DDA3937_RS01770 0.22 -2.2 392,162 - DDA3937_RS01770 0.22 -0.9 392,225 - DDA3937_RS01770 0.29 -3.5 392,330 + DDA3937_RS01770 0.40 -3.0 392,330 + DDA3937_RS01770 0.40 -1.6 392,330 + DDA3937_RS01770 0.40 -3.7 392,331 - DDA3937_RS01770 0.40 -4.2 392,331 - DDA3937_RS01770 0.40 +0.6 392,348 + DDA3937_RS01770 0.42 -3.0 392,364 - DDA3937_RS01770 0.44 -1.5 392,385 - DDA3937_RS01770 0.46 -1.9 392,481 + DDA3937_RS01770 0.57 -1.6 392,482 - DDA3937_RS01770 0.57 -1.0 392,499 - DDA3937_RS01770 0.59 -0.8 392,565 - DDA3937_RS01770 0.67 -2.6 392,598 + DDA3937_RS01770 0.70 -1.0 392,598 + DDA3937_RS01770 0.70 -0.7 392,598 + DDA3937_RS01770 0.70 -1.3 392,598 + DDA3937_RS01770 0.70 -3.3 392,599 - DDA3937_RS01770 0.70 -0.6 392,599 - DDA3937_RS01770 0.70 -2.5 392,599 - DDA3937_RS01770 0.70 -2.7 392,602 - DDA3937_RS01770 0.71 -2.1 392,677 + DDA3937_RS01770 0.79 -2.6 392,677 + DDA3937_RS01770 0.79 -1.2 392,677 + DDA3937_RS01770 0.79 -2.0 392,677 + DDA3937_RS01770 0.79 -2.5 392,677 + DDA3937_RS01770 0.79 -0.7 392,678 - DDA3937_RS01770 0.79 -3.0 392,678 - DDA3937_RS01770 0.79 -0.4 392,785 - -0.7 392,862 + -1.2 392,862 + +3.1 392,863 - -1.6 392,863 - +0.0 392,892 - -1.3 392,897 - -2.4 392,999 - DDA3937_RS01775 0.14 -0.8 392,999 - DDA3937_RS01775 0.14 -4.0 392,999 - DDA3937_RS01775 0.14 -1.0 393,054 + DDA3937_RS01775 0.24 -4.5 393,054 + DDA3937_RS01775 0.24 -1.1 393,055 - DDA3937_RS01775 0.24 -1.4 393,141 + DDA3937_RS01775 0.39 -1.2 393,141 + DDA3937_RS01775 0.39 -2.5 393,141 + DDA3937_RS01775 0.39 -0.7 393,142 - DDA3937_RS01775 0.39 -1.0 393,142 - DDA3937_RS01775 0.39 -1.8 393,217 - DDA3937_RS01775 0.52 -1.4 393,255 + DDA3937_RS01775 0.58 -1.0 393,303 + DDA3937_RS01775 0.67 -2.0 393,304 - DDA3937_RS01775 0.67 -2.1 393,355 - DDA3937_RS01775 0.76 -0.7 393,485 + -3.7 393,486 - -0.2 393,490 + -1.6 393,491 - -2.2 393,491 - -2.0 393,491 - -1.9 393,491 - -2.7 393,491 - -2.1 393,522 + -2.2 393,522 + -2.6 393,522 + -3.6 393,522 + -0.7 393,522 + -1.2 393,522 + -2.3 393,522 + -0.6 393,522 + -1.9 393,523 - -0.6 393,523 - +0.5 393,523 - -2.3 393,523 - -0.4 393,546 - +0.5 393,546 - -2.4 393,678 + +0.3
Or see this region's nucleotide sequence