Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01725 and DDA3937_RS01730 are separated by 124 nucleotides DDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotides DDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides
DDA3937_RS01725: DDA3937_RS01725 - 4,5-DOPA dioxygenase extradiol, at 382,348 to 383,136
_RS01725
DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421
_RS01730
DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194
_RS01735
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 382.275 kb on + strand at 382.275 kb on + strand at 382.275 kb on + strand at 382.276 kb on - strand at 382.276 kb on - strand at 382.290 kb on - strand at 382.295 kb on + strand at 382.295 kb on + strand at 382.296 kb on - strand at 382.296 kb on - strand at 382.300 kb on + strand at 382.300 kb on + strand at 382.300 kb on + strand at 382.301 kb on - strand at 382.314 kb on - strand at 382.321 kb on - strand at 382.342 kb on - strand at 382.342 kb on - strand at 382.342 kb on - strand at 382.347 kb on + strand at 382.420 kb on + strand at 382.437 kb on + strand, within DDA3937_RS01725 at 382.475 kb on + strand, within DDA3937_RS01725 at 382.476 kb on - strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.495 kb on + strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.496 kb on - strand, within DDA3937_RS01725 at 382.528 kb on - strand, within DDA3937_RS01725 at 382.528 kb on - strand, within DDA3937_RS01725 at 382.651 kb on + strand, within DDA3937_RS01725 at 382.651 kb on + strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.652 kb on - strand, within DDA3937_RS01725 at 382.725 kb on + strand, within DDA3937_RS01725 at 382.771 kb on + strand, within DDA3937_RS01725 at 382.777 kb on + strand, within DDA3937_RS01725 at 382.777 kb on + strand, within DDA3937_RS01725 at 382.791 kb on + strand, within DDA3937_RS01725 at 382.792 kb on - strand, within DDA3937_RS01725 at 382.792 kb on - strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.038 kb on + strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.039 kb on - strand, within DDA3937_RS01725 at 383.151 kb on - strand at 383.166 kb on + strand at 383.166 kb on + strand at 383.167 kb on - strand at 383.183 kb on - strand at 383.200 kb on + strand at 383.201 kb on - strand at 383.201 kb on - strand at 383.220 kb on + strand at 383.229 kb on + strand at 383.229 kb on + strand at 383.229 kb on + strand at 383.229 kb on + strand at 383.230 kb on - strand at 383.230 kb on - strand at 383.230 kb on - strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.233 kb on + strand at 383.234 kb on - strand at 383.234 kb on - strand at 383.236 kb on + strand at 383.236 kb on + strand at 383.236 kb on + strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.237 kb on - strand at 383.240 kb on + strand at 383.240 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.249 kb on + strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.250 kb on - strand at 383.253 kb on + strand at 383.254 kb on - strand at 383.254 kb on - strand at 383.276 kb on - strand at 383.283 kb on + strand at 383.306 kb on - strand at 383.347 kb on + strand at 383.379 kb on + strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.380 kb on - strand, within DDA3937_RS01730 at 383.422 kb on + strand, within DDA3937_RS01730 at 383.527 kb on - strand, within DDA3937_RS01730 at 383.563 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.790 kb on - strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.802 kb on + strand, within DDA3937_RS01730 at 383.803 kb on - strand, within DDA3937_RS01730 at 383.846 kb on + strand, within DDA3937_RS01730 at 383.847 kb on - strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.850 kb on + strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.851 kb on - strand, within DDA3937_RS01730 at 383.902 kb on + strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.903 kb on - strand, within DDA3937_RS01730 at 383.970 kb on + strand, within DDA3937_RS01730 at 384.049 kb on - strand, within DDA3937_RS01730 at 384.064 kb on + strand, within DDA3937_RS01730 at 384.109 kb on - strand, within DDA3937_RS01730 at 384.129 kb on + strand, within DDA3937_RS01730 at 384.130 kb on - strand at 384.301 kb on + strand, within DDA3937_RS01730 at 384.301 kb on + strand, within DDA3937_RS01730 at 384.302 kb on - strand, within DDA3937_RS01730 at 384.309 kb on + strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.310 kb on - strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.312 kb on + strand at 384.313 kb on - strand at 384.313 kb on - strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.342 kb on + strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.343 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.367 kb on - strand at 384.435 kb on - strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.907 kb on - strand, within DDA3937_RS01735 at 384.953 kb on + strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 385.058 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.138 kb on - strand at 385.254 kb on - strand at 385.259 kb on + strand at 385.260 kb on - strand at 385.262 kb on + strand at 385.262 kb on + strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.279 kb on + strand at 385.301 kb on + strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.323 kb on + strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 382,275 + -0.7 382,275 + -0.8 382,275 + -1.2 382,276 - -2.2 382,276 - -1.7 382,290 - +0.1 382,295 + -0.3 382,295 + +1.3 382,296 - -2.5 382,296 - -2.9 382,300 + +0.6 382,300 + +0.4 382,300 + +1.6 382,301 - -0.5 382,314 - +1.6 382,321 - -2.8 382,342 - +0.8 382,342 - +1.2 382,342 - -0.6 382,347 + +0.0 382,420 + +0.8 382,437 + DDA3937_RS01725 0.11 -1.4 382,475 + DDA3937_RS01725 0.16 -0.8 382,476 - DDA3937_RS01725 0.16 -2.6 382,495 + DDA3937_RS01725 0.19 +0.4 382,495 + DDA3937_RS01725 0.19 +2.6 382,495 + DDA3937_RS01725 0.19 -0.0 382,495 + DDA3937_RS01725 0.19 +1.2 382,495 + DDA3937_RS01725 0.19 -0.4 382,495 + DDA3937_RS01725 0.19 -1.5 382,495 + DDA3937_RS01725 0.19 +0.6 382,496 - DDA3937_RS01725 0.19 +3.0 382,496 - DDA3937_RS01725 0.19 +1.6 382,496 - DDA3937_RS01725 0.19 -2.0 382,496 - DDA3937_RS01725 0.19 -3.4 382,528 - DDA3937_RS01725 0.23 -2.1 382,528 - DDA3937_RS01725 0.23 -2.1 382,651 + DDA3937_RS01725 0.38 -0.7 382,651 + DDA3937_RS01725 0.38 +0.6 382,652 - DDA3937_RS01725 0.39 +0.8 382,652 - DDA3937_RS01725 0.39 -0.7 382,652 - DDA3937_RS01725 0.39 -1.7 382,652 - DDA3937_RS01725 0.39 +2.0 382,725 + DDA3937_RS01725 0.48 -0.1 382,771 + DDA3937_RS01725 0.54 -3.5 382,777 + DDA3937_RS01725 0.54 -0.4 382,777 + DDA3937_RS01725 0.54 -1.0 382,791 + DDA3937_RS01725 0.56 -1.4 382,792 - DDA3937_RS01725 0.56 +0.9 382,792 - DDA3937_RS01725 0.56 +1.9 383,038 + DDA3937_RS01725 0.87 +0.6 383,038 + DDA3937_RS01725 0.87 -1.4 383,038 + DDA3937_RS01725 0.87 +1.3 383,038 + DDA3937_RS01725 0.87 +1.5 383,038 + DDA3937_RS01725 0.87 -1.0 383,038 + DDA3937_RS01725 0.87 -0.5 383,038 + DDA3937_RS01725 0.87 +0.5 383,038 + DDA3937_RS01725 0.87 -2.4 383,038 + DDA3937_RS01725 0.87 +1.3 383,038 + DDA3937_RS01725 0.87 +2.9 383,039 - DDA3937_RS01725 0.88 -2.3 383,039 - DDA3937_RS01725 0.88 -0.7 383,039 - DDA3937_RS01725 0.88 -1.9 383,039 - DDA3937_RS01725 0.88 -2.6 383,039 - DDA3937_RS01725 0.88 -1.0 383,151 - -0.5 383,166 + -0.5 383,166 + +0.6 383,167 - -0.0 383,183 - -2.3 383,200 + +0.8 383,201 - -1.3 383,201 - +0.7 383,220 + +0.5 383,229 + -0.1 383,229 + -2.0 383,229 + -1.2 383,229 + -0.9 383,230 - -1.6 383,230 - +1.3 383,230 - +0.3 383,233 + -2.2 383,233 + +0.2 383,233 + +1.7 383,233 + -1.4 383,233 + +0.1 383,234 - -0.3 383,234 - -0.6 383,236 + -1.5 383,236 + -0.5 383,236 + -3.5 383,237 - -2.2 383,237 - -0.3 383,237 - -0.7 383,237 - +0.7 383,237 - -0.7 383,237 - -1.1 383,237 - -0.0 383,237 - -2.2 383,240 + -1.9 383,240 + -2.7 383,249 + -1.6 383,249 + -0.5 383,249 + -2.7 383,249 + -1.2 383,249 + -2.7 383,249 + +1.0 383,249 + -0.2 383,249 + +2.3 383,250 - +0.3 383,250 - +0.7 383,250 - +1.9 383,250 - -2.4 383,250 - -0.4 383,250 - +0.7 383,250 - -0.9 383,250 - -0.6 383,250 - -0.1 383,253 + -2.0 383,254 - +0.5 383,254 - +2.2 383,276 - -1.9 383,283 + -0.0 383,306 - -2.2 383,347 + -0.6 383,379 + DDA3937_RS01730 0.10 -2.1 383,380 - DDA3937_RS01730 0.10 -3.3 383,380 - DDA3937_RS01730 0.10 -1.7 383,380 - DDA3937_RS01730 0.10 -0.4 383,380 - DDA3937_RS01730 0.10 -0.2 383,380 - DDA3937_RS01730 0.10 +1.0 383,422 + DDA3937_RS01730 0.14 +0.6 383,527 - DDA3937_RS01730 0.23 -1.6 383,563 - DDA3937_RS01730 0.26 -1.7 383,790 - DDA3937_RS01730 0.46 -1.3 383,790 - DDA3937_RS01730 0.46 -0.4 383,790 - DDA3937_RS01730 0.46 +0.9 383,802 + DDA3937_RS01730 0.47 -0.6 383,802 + DDA3937_RS01730 0.47 -1.2 383,803 - DDA3937_RS01730 0.47 -0.5 383,846 + DDA3937_RS01730 0.50 -0.2 383,847 - DDA3937_RS01730 0.50 -2.0 383,850 + DDA3937_RS01730 0.51 -2.2 383,850 + DDA3937_RS01730 0.51 +0.6 383,850 + DDA3937_RS01730 0.51 -2.5 383,851 - DDA3937_RS01730 0.51 +0.6 383,851 - DDA3937_RS01730 0.51 -1.0 383,851 - DDA3937_RS01730 0.51 -1.2 383,851 - DDA3937_RS01730 0.51 +1.3 383,851 - DDA3937_RS01730 0.51 -0.7 383,851 - DDA3937_RS01730 0.51 -2.3 383,851 - DDA3937_RS01730 0.51 -1.0 383,902 + DDA3937_RS01730 0.55 +1.0 383,903 - DDA3937_RS01730 0.55 -1.4 383,903 - DDA3937_RS01730 0.55 -1.0 383,970 + DDA3937_RS01730 0.61 +0.2 384,049 - DDA3937_RS01730 0.68 -1.8 384,064 + DDA3937_RS01730 0.69 -2.0 384,109 - DDA3937_RS01730 0.73 -0.7 384,129 + DDA3937_RS01730 0.75 +0.0 384,130 - +0.6 384,301 + DDA3937_RS01730 0.90 +0.9 384,301 + DDA3937_RS01730 0.90 +0.4 384,302 - DDA3937_RS01730 0.90 -0.3 384,309 + +0.7 384,310 - +0.4 384,310 - -1.3 384,310 - +0.4 384,310 - -1.7 384,312 + -2.1 384,312 + +1.2 384,312 + -0.7 384,313 - -3.4 384,313 - -0.1 384,342 + -2.1 384,342 + -0.7 384,342 + +0.3 384,342 + -0.3 384,342 + -1.9 384,342 + -2.0 384,342 + -1.8 384,342 + -1.2 384,343 - +0.9 384,343 - -0.4 384,343 - +0.6 384,367 - +0.3 384,367 - -1.6 384,367 - -0.5 384,435 - +1.1 384,507 + +0.4 384,507 + +0.0 384,507 + -1.2 384,508 - -1.6 384,508 - +0.0 384,508 - +0.5 384,731 + DDA3937_RS01735 0.39 +2.0 384,731 + DDA3937_RS01735 0.39 -0.9 384,731 + DDA3937_RS01735 0.39 +1.5 384,731 + DDA3937_RS01735 0.39 -1.0 384,731 + DDA3937_RS01735 0.39 +0.7 384,731 + DDA3937_RS01735 0.39 -0.5 384,731 + DDA3937_RS01735 0.39 -0.1 384,731 + DDA3937_RS01735 0.39 -3.2 384,731 + DDA3937_RS01735 0.39 -0.5 384,731 + DDA3937_RS01735 0.39 -1.4 384,731 + DDA3937_RS01735 0.39 +2.3 384,731 + DDA3937_RS01735 0.39 +0.6 384,731 + DDA3937_RS01735 0.39 +2.5 384,732 - DDA3937_RS01735 0.39 +0.0 384,732 - DDA3937_RS01735 0.39 -0.2 384,732 - DDA3937_RS01735 0.39 +1.0 384,732 - DDA3937_RS01735 0.39 +0.4 384,732 - DDA3937_RS01735 0.39 -1.3 384,732 - DDA3937_RS01735 0.39 -1.9 384,732 - DDA3937_RS01735 0.39 -2.0 384,732 - DDA3937_RS01735 0.39 -0.5 384,732 - DDA3937_RS01735 0.39 -1.7 384,906 + DDA3937_RS01735 0.62 +1.5 384,906 + DDA3937_RS01735 0.62 -1.5 384,907 - DDA3937_RS01735 0.62 -1.7 384,953 + DDA3937_RS01735 0.68 -1.1 384,994 - DDA3937_RS01735 0.74 -2.3 384,994 - DDA3937_RS01735 0.74 -0.7 384,995 + DDA3937_RS01735 0.74 -0.4 384,995 + DDA3937_RS01735 0.74 +0.0 384,995 + DDA3937_RS01735 0.74 -0.5 384,996 - DDA3937_RS01735 0.74 -1.0 384,996 - DDA3937_RS01735 0.74 -0.1 384,996 - DDA3937_RS01735 0.74 +0.0 384,996 - DDA3937_RS01735 0.74 -0.6 384,996 - DDA3937_RS01735 0.74 -1.7 384,996 - DDA3937_RS01735 0.74 -1.4 385,058 + DDA3937_RS01735 0.82 -1.4 385,101 + DDA3937_RS01735 0.88 -1.9 385,101 + DDA3937_RS01735 0.88 -1.9 385,138 - +0.6 385,254 - -0.6 385,259 + +1.1 385,260 - +1.1 385,262 + +3.0 385,262 + -1.4 385,263 - +0.2 385,263 - -1.9 385,263 - +1.0 385,279 + +1.3 385,301 + -0.2 385,302 - -0.6 385,302 - +0.3 385,302 - -1.8 385,323 + -1.0 385,324 - -0.9 385,324 - -0.4 385,324 - +1.5 385,395 + +0.4
Or see this region's nucleotide sequence