Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01640 and DDA3937_RS01645 are separated by 230 nucleotides DDA3937_RS01645 and DDA3937_RS01650 are separated by 4 nucleotides DDA3937_RS01650 and DDA3937_RS01655 are separated by 132 nucleotides DDA3937_RS01655 and DDA3937_RS01660 are separated by 73 nucleotides
DDA3937_RS01640: DDA3937_RS01640 - multidrug effflux MFS transporter, at 359,790 to 361,043
_RS01640
DDA3937_RS01645: DDA3937_RS01645 - stringent starvation protein A, at 361,274 to 361,915
_RS01645
DDA3937_RS01650: DDA3937_RS01650 - ClpXP protease specificity-enhancing factor, at 361,920 to 362,417
_RS01650
DDA3937_RS01655: DDA3937_RS01655 - GFA family protein, at 362,550 to 362,960
_RS01655
DDA3937_RS01660: DDA3937_RS01660 - FAD-dependent oxidoreductase, at 363,034 to 364,452
_RS01660
Position (kb) 361
362
363 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 360.952 kb on + strand at 360.952 kb on + strand at 360.952 kb on + strand at 360.952 kb on + strand at 360.953 kb on - strand at 360.953 kb on - strand at 360.953 kb on - strand at 360.976 kb on + strand at 360.976 kb on + strand at 360.976 kb on + strand at 360.977 kb on - strand at 360.977 kb on - strand at 360.984 kb on - strand at 360.984 kb on - strand at 360.984 kb on - strand at 360.998 kb on + strand at 361.052 kb on - strand at 361.052 kb on - strand at 361.084 kb on + strand at 361.113 kb on + strand at 361.113 kb on + strand at 361.113 kb on + strand at 361.131 kb on + strand at 361.131 kb on + strand at 361.131 kb on + strand at 361.132 kb on - strand at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.482 kb on - strand, within DDA3937_RS01645 at 361.492 kb on + strand, within DDA3937_RS01645 at 361.505 kb on + strand, within DDA3937_RS01645 at 361.636 kb on + strand, within DDA3937_RS01645 at 361.637 kb on - strand, within DDA3937_RS01645 at 361.637 kb on - strand, within DDA3937_RS01645 at 361.751 kb on + strand, within DDA3937_RS01645 at 361.752 kb on - strand, within DDA3937_RS01645 at 361.829 kb on + strand, within DDA3937_RS01645 at 361.830 kb on - strand, within DDA3937_RS01645 at 361.831 kb on + strand, within DDA3937_RS01645 at 361.831 kb on + strand, within DDA3937_RS01645 at 361.832 kb on - strand, within DDA3937_RS01645 at 361.971 kb on + strand, within DDA3937_RS01650 at 361.971 kb on + strand, within DDA3937_RS01650 at 361.971 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.415 kb on + strand at 362.443 kb on - strand at 362.487 kb on - strand at 362.576 kb on - strand at 362.576 kb on - strand at 362.587 kb on + strand at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.879 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.883 kb on - strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.895 kb on + strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.905 kb on + strand, within DDA3937_RS01655 at 362.906 kb on - strand, within DDA3937_RS01655 at 362.947 kb on + strand at 362.948 kb on - strand at 362.948 kb on - strand at 362.952 kb on - strand at 362.995 kb on - strand at 363.035 kb on + strand at 363.036 kb on - strand at 363.036 kb on - strand at 363.047 kb on + strand at 363.047 kb on + strand at 363.047 kb on + strand at 363.048 kb on - strand at 363.048 kb on - strand at 363.048 kb on - strand at 363.363 kb on + strand, within DDA3937_RS01660 at 363.363 kb on + strand, within DDA3937_RS01660 at 363.364 kb on - strand, within DDA3937_RS01660 at 363.364 kb on - strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.376 kb on + strand, within DDA3937_RS01660 at 363.377 kb on - strand, within DDA3937_RS01660 at 363.377 kb on - strand, within DDA3937_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 360,952 + +0.6 360,952 + -0.4 360,952 + -2.5 360,952 + +2.9 360,953 - -1.2 360,953 - +0.0 360,953 - +1.2 360,976 + -0.4 360,976 + -1.1 360,976 + -1.6 360,977 - -1.7 360,977 - +1.0 360,984 - -2.2 360,984 - +1.0 360,984 - -1.4 360,998 + -1.0 361,052 - -2.6 361,052 - -1.2 361,084 + -0.1 361,113 + -1.3 361,113 + -1.8 361,113 + -0.4 361,131 + -1.0 361,131 + -0.8 361,131 + -1.4 361,132 - -2.3 361,481 + DDA3937_RS01645 0.32 +0.6 361,481 + DDA3937_RS01645 0.32 -0.1 361,481 + DDA3937_RS01645 0.32 -2.0 361,481 + DDA3937_RS01645 0.32 -2.0 361,481 + DDA3937_RS01645 0.32 +1.5 361,481 + DDA3937_RS01645 0.32 -0.4 361,482 - DDA3937_RS01645 0.32 -0.4 361,492 + DDA3937_RS01645 0.34 -1.0 361,505 + DDA3937_RS01645 0.36 -2.7 361,636 + DDA3937_RS01645 0.56 -1.6 361,637 - DDA3937_RS01645 0.57 +0.4 361,637 - DDA3937_RS01645 0.57 -2.4 361,751 + DDA3937_RS01645 0.74 +0.0 361,752 - DDA3937_RS01645 0.74 +0.6 361,829 + DDA3937_RS01645 0.86 -1.7 361,830 - DDA3937_RS01645 0.87 +0.7 361,831 + DDA3937_RS01645 0.87 -0.4 361,831 + DDA3937_RS01645 0.87 +1.6 361,832 - DDA3937_RS01645 0.87 -3.4 361,971 + DDA3937_RS01650 0.10 -3.0 361,971 + DDA3937_RS01650 0.10 -2.2 361,971 + DDA3937_RS01650 0.10 +0.1 362,081 + DDA3937_RS01650 0.32 -1.8 362,081 + DDA3937_RS01650 0.32 -1.8 362,081 + DDA3937_RS01650 0.32 -1.4 362,113 + DDA3937_RS01650 0.39 -1.0 362,113 + DDA3937_RS01650 0.39 -0.8 362,114 - DDA3937_RS01650 0.39 -1.2 362,114 - DDA3937_RS01650 0.39 -2.4 362,114 - DDA3937_RS01650 0.39 -2.8 362,114 - DDA3937_RS01650 0.39 -2.7 362,199 + DDA3937_RS01650 0.56 -0.3 362,199 + DDA3937_RS01650 0.56 -2.8 362,199 + DDA3937_RS01650 0.56 -2.5 362,199 + DDA3937_RS01650 0.56 -1.8 362,199 + DDA3937_RS01650 0.56 -1.2 362,415 + +0.8 362,443 - +0.2 362,487 - -2.2 362,576 - -0.2 362,576 - -1.4 362,587 + -1.2 362,612 + DDA3937_RS01655 0.15 -2.5 362,612 + DDA3937_RS01655 0.15 +0.2 362,612 + DDA3937_RS01655 0.15 -1.1 362,612 + DDA3937_RS01655 0.15 -0.1 362,612 + DDA3937_RS01655 0.15 -3.1 362,612 + DDA3937_RS01655 0.15 -0.4 362,612 + DDA3937_RS01655 0.15 +0.4 362,612 + DDA3937_RS01655 0.15 +0.5 362,612 + DDA3937_RS01655 0.15 -0.3 362,612 + DDA3937_RS01655 0.15 +0.8 362,613 - DDA3937_RS01655 0.15 -1.5 362,613 - DDA3937_RS01655 0.15 -0.4 362,613 - DDA3937_RS01655 0.15 +1.8 362,613 - DDA3937_RS01655 0.15 -2.1 362,613 - DDA3937_RS01655 0.15 +1.0 362,613 - DDA3937_RS01655 0.15 -1.6 362,613 - DDA3937_RS01655 0.15 -1.0 362,613 - DDA3937_RS01655 0.15 +0.3 362,613 - DDA3937_RS01655 0.15 +0.6 362,613 - DDA3937_RS01655 0.15 -0.8 362,613 - DDA3937_RS01655 0.15 -1.7 362,625 + DDA3937_RS01655 0.18 -1.0 362,625 + DDA3937_RS01655 0.18 +1.4 362,625 + DDA3937_RS01655 0.18 +0.3 362,625 + DDA3937_RS01655 0.18 -1.0 362,625 + DDA3937_RS01655 0.18 -0.5 362,625 + DDA3937_RS01655 0.18 -0.4 362,625 + DDA3937_RS01655 0.18 +0.0 362,626 - DDA3937_RS01655 0.18 +0.1 362,626 - DDA3937_RS01655 0.18 -0.5 362,626 - DDA3937_RS01655 0.18 +1.3 362,626 - DDA3937_RS01655 0.18 -0.4 362,626 - DDA3937_RS01655 0.18 +0.7 362,626 - DDA3937_RS01655 0.18 +0.8 362,626 - DDA3937_RS01655 0.18 +0.8 362,626 - DDA3937_RS01655 0.18 +1.6 362,643 - DDA3937_RS01655 0.23 -0.9 362,643 - DDA3937_RS01655 0.23 -0.7 362,643 - DDA3937_RS01655 0.23 -0.4 362,643 - DDA3937_RS01655 0.23 -1.4 362,814 + DDA3937_RS01655 0.64 -2.2 362,814 + DDA3937_RS01655 0.64 -0.7 362,871 + DDA3937_RS01655 0.78 +2.2 362,871 + DDA3937_RS01655 0.78 -1.6 362,872 - DDA3937_RS01655 0.78 -1.5 362,872 - DDA3937_RS01655 0.78 -2.6 362,872 - DDA3937_RS01655 0.78 +1.5 362,872 - DDA3937_RS01655 0.78 -1.8 362,879 + DDA3937_RS01655 0.80 +1.4 362,882 + DDA3937_RS01655 0.81 +0.9 362,882 + DDA3937_RS01655 0.81 +1.9 362,883 - DDA3937_RS01655 0.81 -0.4 362,892 + DDA3937_RS01655 0.83 +0.7 362,892 + DDA3937_RS01655 0.83 -0.1 362,895 + DDA3937_RS01655 0.84 -3.3 362,896 - DDA3937_RS01655 0.84 -1.2 362,896 - DDA3937_RS01655 0.84 -1.3 362,905 + DDA3937_RS01655 0.86 -2.2 362,906 - DDA3937_RS01655 0.87 -3.2 362,947 + -1.8 362,948 - -1.6 362,948 - -2.6 362,952 - +2.9 362,995 - -4.6 363,035 + +0.6 363,036 - +1.2 363,036 - -2.0 363,047 + -1.2 363,047 + +1.3 363,047 + -0.9 363,048 - -1.7 363,048 - +0.4 363,048 - -1.1 363,363 + DDA3937_RS01660 0.23 +2.1 363,363 + DDA3937_RS01660 0.23 -1.8 363,364 - DDA3937_RS01660 0.23 -2.3 363,364 - DDA3937_RS01660 0.23 -0.3 363,376 + DDA3937_RS01660 0.24 -1.4 363,376 + DDA3937_RS01660 0.24 -1.8 363,376 + DDA3937_RS01660 0.24 +0.0 363,376 + DDA3937_RS01660 0.24 +0.8 363,377 - DDA3937_RS01660 0.24 -0.3 363,377 - DDA3937_RS01660 0.24 +1.1
Or see this region's nucleotide sequence