Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01580

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01570 and DDA3937_RS01575 are separated by 4 nucleotidesDDA3937_RS01575 and DDA3937_RS01580 are separated by 17 nucleotidesDDA3937_RS01580 and DDA3937_RS01585 overlap by 8 nucleotidesDDA3937_RS01585 and DDA3937_RS01590 are separated by 132 nucleotidesDDA3937_RS01590 and DDA3937_RS01595 are separated by 57 nucleotides DDA3937_RS01570: DDA3937_RS01570 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 347,975 to 348,757 _RS01570 DDA3937_RS01575: DDA3937_RS01575 - outer membrane lipid asymmetry maintenance protein MlaD, at 348,762 to 349,385 _RS01575 DDA3937_RS01580: DDA3937_RS01580 - phospholipid-binding protein MlaC, at 349,403 to 350,056 _RS01580 DDA3937_RS01585: DDA3937_RS01585 - lipid asymmetry maintenance protein MlaB, at 350,049 to 350,351 _RS01585 DDA3937_RS01590: DDA3937_RS01590 - BolA family iron metabolism protein IbaG, at 350,484 to 350,738 _RS01590 DDA3937_RS01595: DDA3937_RS01595 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 350,796 to 352,058 _RS01595 Position (kb) 349 350 351Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 348.574 kb on + strand, within DDA3937_RS01570at 348.574 kb on + strand, within DDA3937_RS01570at 348.575 kb on - strand, within DDA3937_RS01570at 348.575 kb on - strand, within DDA3937_RS01570at 348.638 kb on + strand, within DDA3937_RS01570at 348.796 kb on + strandat 348.796 kb on + strandat 348.797 kb on - strandat 348.823 kb on + strandat 348.833 kb on - strand, within DDA3937_RS01575at 348.879 kb on + strand, within DDA3937_RS01575at 348.880 kb on - strand, within DDA3937_RS01575at 348.880 kb on - strand, within DDA3937_RS01575at 348.905 kb on + strand, within DDA3937_RS01575at 348.917 kb on + strand, within DDA3937_RS01575at 348.917 kb on + strand, within DDA3937_RS01575at 348.972 kb on - strand, within DDA3937_RS01575at 348.993 kb on + strand, within DDA3937_RS01575at 348.993 kb on + strand, within DDA3937_RS01575at 348.993 kb on + strand, within DDA3937_RS01575at 348.994 kb on - strand, within DDA3937_RS01575at 349.017 kb on - strand, within DDA3937_RS01575at 349.029 kb on + strand, within DDA3937_RS01575at 349.092 kb on + strand, within DDA3937_RS01575at 349.092 kb on + strand, within DDA3937_RS01575at 349.092 kb on + strand, within DDA3937_RS01575at 349.213 kb on + strand, within DDA3937_RS01575at 349.213 kb on + strand, within DDA3937_RS01575at 349.214 kb on - strand, within DDA3937_RS01575at 349.214 kb on - strand, within DDA3937_RS01575at 349.215 kb on + strand, within DDA3937_RS01575at 349.215 kb on + strand, within DDA3937_RS01575at 349.215 kb on + strand, within DDA3937_RS01575at 349.216 kb on - strand, within DDA3937_RS01575at 349.216 kb on - strand, within DDA3937_RS01575at 349.216 kb on - strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.235 kb on + strand, within DDA3937_RS01575at 349.256 kb on + strand, within DDA3937_RS01575at 349.257 kb on - strand, within DDA3937_RS01575at 349.286 kb on + strand, within DDA3937_RS01575at 349.287 kb on - strand, within DDA3937_RS01575at 349.307 kb on + strand, within DDA3937_RS01575at 349.308 kb on - strand, within DDA3937_RS01575at 349.383 kb on + strandat 349.417 kb on - strandat 349.492 kb on + strand, within DDA3937_RS01580at 349.493 kb on - strand, within DDA3937_RS01580at 349.499 kb on + strand, within DDA3937_RS01580at 349.543 kb on + strand, within DDA3937_RS01580at 349.544 kb on - strand, within DDA3937_RS01580at 349.544 kb on - strand, within DDA3937_RS01580at 349.564 kb on + strand, within DDA3937_RS01580at 349.564 kb on + strand, within DDA3937_RS01580at 349.565 kb on - strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.631 kb on + strandat 349.632 kb on - strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.662 kb on - strand, within DDA3937_RS01580at 349.662 kb on - strand, within DDA3937_RS01580at 349.694 kb on + strand, within DDA3937_RS01580at 349.715 kb on + strand, within DDA3937_RS01580at 349.715 kb on + strand, within DDA3937_RS01580at 349.716 kb on - strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.731 kb on - strand, within DDA3937_RS01580at 349.731 kb on - strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.766 kb on + strand, within DDA3937_RS01580at 349.767 kb on - strand, within DDA3937_RS01580at 349.876 kb on + strand, within DDA3937_RS01580at 349.876 kb on + strand, within DDA3937_RS01580at 349.877 kb on - strand, within DDA3937_RS01580at 349.877 kb on - strand, within DDA3937_RS01580at 349.877 kb on - strand, within DDA3937_RS01580at 349.907 kb on + strand, within DDA3937_RS01580at 349.907 kb on + strand, within DDA3937_RS01580at 349.908 kb on - strand, within DDA3937_RS01580at 349.908 kb on - strand, within DDA3937_RS01580at 349.939 kb on + strand, within DDA3937_RS01580at 349.940 kb on - strand, within DDA3937_RS01580at 350.118 kb on - strand, within DDA3937_RS01585at 350.233 kb on - strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.308 kb on + strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.309 kb on - strand, within DDA3937_RS01585at 350.310 kb on + strand, within DDA3937_RS01585at 350.310 kb on + strand, within DDA3937_RS01585at 350.310 kb on + strandat 350.310 kb on + strand, within DDA3937_RS01585at 350.311 kb on - strand, within DDA3937_RS01585at 350.311 kb on - strand, within DDA3937_RS01585at 350.311 kb on - strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.312 kb on + strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.313 kb on - strand, within DDA3937_RS01585at 350.416 kb on + strandat 350.416 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.437 kb on + strandat 350.442 kb on + strandat 350.454 kb on + strandat 350.454 kb on + strandat 350.470 kb on + strandat 350.470 kb on + strandat 350.501 kb on + strandat 350.501 kb on + strandat 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.649 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.691 kb on + strand, within DDA3937_RS01590at 350.693 kb on + strand, within DDA3937_RS01590at 350.693 kb on + strand, within DDA3937_RS01590at 350.693 kb on + strand, within DDA3937_RS01590at 350.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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348,574 + DDA3937_RS01570 0.77 -2.3
348,574 + DDA3937_RS01570 0.77 +2.2
348,575 - DDA3937_RS01570 0.77 -2.9
348,575 - DDA3937_RS01570 0.77 -2.8
348,638 + DDA3937_RS01570 0.85 -2.4
348,796 + -1.2
348,796 + -3.5
348,797 - -0.4
348,823 + -1.0
348,833 - DDA3937_RS01575 0.11 +0.0
348,879 + DDA3937_RS01575 0.19 +0.7
348,880 - DDA3937_RS01575 0.19 -2.0
348,880 - DDA3937_RS01575 0.19 -2.7
348,905 + DDA3937_RS01575 0.23 -0.8
348,917 + DDA3937_RS01575 0.25 -0.8
348,917 + DDA3937_RS01575 0.25 -1.7
348,972 - DDA3937_RS01575 0.34 -0.0
348,993 + DDA3937_RS01575 0.37 -1.6
348,993 + DDA3937_RS01575 0.37 -3.1
348,993 + DDA3937_RS01575 0.37 +1.2
348,994 - DDA3937_RS01575 0.37 -1.2
349,017 - DDA3937_RS01575 0.41 -4.9
349,029 + DDA3937_RS01575 0.43 -3.2
349,092 + DDA3937_RS01575 0.53 -1.2
349,092 + DDA3937_RS01575 0.53 +0.4
349,092 + DDA3937_RS01575 0.53 -1.3
349,213 + DDA3937_RS01575 0.72 -0.5
349,213 + DDA3937_RS01575 0.72 -2.4
349,214 - DDA3937_RS01575 0.72 +1.2
349,214 - DDA3937_RS01575 0.72 -1.0
349,215 + DDA3937_RS01575 0.73 +1.2
349,215 + DDA3937_RS01575 0.73 +0.6
349,215 + DDA3937_RS01575 0.73 -1.3
349,216 - DDA3937_RS01575 0.73 -0.6
349,216 - DDA3937_RS01575 0.73 +0.6
349,216 - DDA3937_RS01575 0.73 -1.6
349,217 + DDA3937_RS01575 0.73 +0.1
349,217 + DDA3937_RS01575 0.73 +0.0
349,217 + DDA3937_RS01575 0.73 -2.0
349,217 + DDA3937_RS01575 0.73 -1.9
349,217 + DDA3937_RS01575 0.73 -0.4
349,217 + DDA3937_RS01575 0.73 -0.6
349,217 + DDA3937_RS01575 0.73 -1.4
349,218 - DDA3937_RS01575 0.73 -2.7
349,218 - DDA3937_RS01575 0.73 -3.7
349,218 - DDA3937_RS01575 0.73 -1.5
349,218 - DDA3937_RS01575 0.73 -1.6
349,218 - DDA3937_RS01575 0.73 -1.2
349,218 - DDA3937_RS01575 0.73 -3.1
349,218 - DDA3937_RS01575 0.73 -2.0
349,218 - DDA3937_RS01575 0.73 -3.7
349,235 + DDA3937_RS01575 0.76 -2.1
349,256 + DDA3937_RS01575 0.79 -2.0
349,257 - DDA3937_RS01575 0.79 -2.8
349,286 + DDA3937_RS01575 0.84 -0.8
349,287 - DDA3937_RS01575 0.84 -2.1
349,307 + DDA3937_RS01575 0.87 +0.0
349,308 - DDA3937_RS01575 0.88 -1.3
349,383 + +0.7
349,417 - -2.3
349,492 + DDA3937_RS01580 0.14 -1.6
349,493 - DDA3937_RS01580 0.14 -0.4
349,499 + DDA3937_RS01580 0.15 -1.9
349,543 + DDA3937_RS01580 0.21 +0.2
349,544 - DDA3937_RS01580 0.22 -2.3
349,544 - DDA3937_RS01580 0.22 -0.9
349,564 + DDA3937_RS01580 0.25 -0.6
349,564 + DDA3937_RS01580 0.25 -1.6
349,565 - DDA3937_RS01580 0.25 -2.0
349,580 + DDA3937_RS01580 0.27 -1.5
349,580 + DDA3937_RS01580 0.27 +1.6
349,580 + DDA3937_RS01580 0.27 -0.7
349,581 - DDA3937_RS01580 0.27 -2.5
349,581 - DDA3937_RS01580 0.27 -2.0
349,581 - DDA3937_RS01580 0.27 -0.6
349,616 + DDA3937_RS01580 0.33 -2.0
349,616 + DDA3937_RS01580 0.33 -1.8
349,616 + DDA3937_RS01580 0.33 -3.1
349,617 - DDA3937_RS01580 0.33 -3.8
349,617 - DDA3937_RS01580 0.33 -1.6
349,617 - DDA3937_RS01580 0.33 -2.0
349,617 - DDA3937_RS01580 0.33 -0.4
349,631 + -0.7
349,632 - DDA3937_RS01580 0.35 -1.2
349,661 + DDA3937_RS01580 0.39 -1.3
349,661 + DDA3937_RS01580 0.39 +0.6
349,661 + DDA3937_RS01580 0.39 -1.2
349,662 - DDA3937_RS01580 0.40 -1.7
349,662 - DDA3937_RS01580 0.40 -2.4
349,694 + DDA3937_RS01580 0.44 +0.8
349,715 + DDA3937_RS01580 0.48 -3.7
349,715 + DDA3937_RS01580 0.48 -1.0
349,716 - DDA3937_RS01580 0.48 -1.8
349,730 + DDA3937_RS01580 0.50 -3.2
349,730 + DDA3937_RS01580 0.50 -3.1
349,730 + DDA3937_RS01580 0.50 +0.3
349,731 - DDA3937_RS01580 0.50 -2.4
349,731 - DDA3937_RS01580 0.50 -2.8
349,751 + DDA3937_RS01580 0.53 -2.1
349,751 + DDA3937_RS01580 0.53 +0.7
349,751 + DDA3937_RS01580 0.53 -3.0
349,751 + DDA3937_RS01580 0.53 -1.2
349,751 + DDA3937_RS01580 0.53 -3.4
349,766 + DDA3937_RS01580 0.56 -1.6
349,766 + DDA3937_RS01580 0.56 -0.7
349,766 + DDA3937_RS01580 0.56 -4.8
349,766 + DDA3937_RS01580 0.56 -1.4
349,767 - DDA3937_RS01580 0.56 -1.4
349,876 + DDA3937_RS01580 0.72 -1.6
349,876 + DDA3937_RS01580 0.72 -1.6
349,877 - DDA3937_RS01580 0.72 -2.8
349,877 - DDA3937_RS01580 0.72 -1.7
349,877 - DDA3937_RS01580 0.72 +2.1
349,907 + DDA3937_RS01580 0.77 +0.9
349,907 + DDA3937_RS01580 0.77 -1.8
349,908 - DDA3937_RS01580 0.77 -2.4
349,908 - DDA3937_RS01580 0.77 -1.0
349,939 + DDA3937_RS01580 0.82 -0.7
349,940 - DDA3937_RS01580 0.82 -1.7
350,118 - DDA3937_RS01585 0.23 -0.2
350,233 - DDA3937_RS01585 0.61 -1.6
350,308 + DDA3937_RS01585 0.85 -2.5
350,308 + DDA3937_RS01585 0.85 -2.0
350,308 + DDA3937_RS01585 0.85 +0.5
350,308 + DDA3937_RS01585 0.85 +0.2
350,308 + DDA3937_RS01585 0.85 +0.5
350,308 + DDA3937_RS01585 0.85 +0.1
350,308 + DDA3937_RS01585 0.85 -1.0
350,309 - DDA3937_RS01585 0.86 +2.8
350,309 - DDA3937_RS01585 0.86 -2.9
350,309 - DDA3937_RS01585 0.86 -1.2
350,309 - DDA3937_RS01585 0.86 -1.8
350,309 - DDA3937_RS01585 0.86 -1.4
350,309 - DDA3937_RS01585 0.86 -0.8
350,310 + DDA3937_RS01585 0.86 -0.7
350,310 + DDA3937_RS01585 0.86 -3.2
350,310 + -0.4
350,310 + DDA3937_RS01585 0.86 -1.8
350,311 - DDA3937_RS01585 0.86 -1.4
350,311 - DDA3937_RS01585 0.86 +0.9
350,311 - DDA3937_RS01585 0.86 -2.1
350,312 + DDA3937_RS01585 0.87 -1.3
350,312 + DDA3937_RS01585 0.87 -1.2
350,312 + DDA3937_RS01585 0.87 -2.0
350,312 + DDA3937_RS01585 0.87 -2.3
350,313 - DDA3937_RS01585 0.87 -2.7
350,313 - DDA3937_RS01585 0.87 +0.1
350,313 - DDA3937_RS01585 0.87 +0.6
350,313 - DDA3937_RS01585 0.87 -1.6
350,416 + -2.4
350,416 + +0.8
350,437 + +1.9
350,437 + -3.1
350,437 + -1.8
350,437 + -0.1
350,437 + -2.9
350,437 + -0.7
350,437 + +0.2
350,442 + -1.0
350,454 + -3.0
350,454 + -1.5
350,470 + -2.5
350,470 + -0.4
350,501 + -1.9
350,501 + -0.6
350,649 + DDA3937_RS01590 0.65 -1.2
350,649 + DDA3937_RS01590 0.65 -2.0
350,649 + DDA3937_RS01590 0.65 -2.5
350,649 + DDA3937_RS01590 0.65 +0.2
350,649 + DDA3937_RS01590 0.65 -0.4
350,649 + DDA3937_RS01590 0.65 -0.4
350,649 + DDA3937_RS01590 0.65 -2.0
350,691 + DDA3937_RS01590 0.81 -2.9
350,691 + DDA3937_RS01590 0.81 +0.6
350,691 + DDA3937_RS01590 0.81 +0.6
350,691 + DDA3937_RS01590 0.81 -0.6
350,691 + DDA3937_RS01590 0.81 -0.4
350,693 + DDA3937_RS01590 0.82 -0.2
350,693 + DDA3937_RS01590 0.82 -1.7
350,693 + DDA3937_RS01590 0.82 -0.5
350,765 + +0.6

Or see this region's nucleotide sequence