Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01565

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01560 and DDA3937_RS01565 are separated by 281 nucleotidesDDA3937_RS01565 and DDA3937_RS01570 are separated by 3 nucleotidesDDA3937_RS01570 and DDA3937_RS01575 are separated by 4 nucleotides DDA3937_RS01560: DDA3937_RS01560 - calcium/sodium antiporter, at 345,918 to 346,880 _RS01560 DDA3937_RS01565: DDA3937_RS01565 - phospholipid ABC transporter ATP-binding protein MlaF, at 347,162 to 347,971 _RS01565 DDA3937_RS01570: DDA3937_RS01570 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 347,975 to 348,757 _RS01570 DDA3937_RS01575: DDA3937_RS01575 - outer membrane lipid asymmetry maintenance protein MlaD, at 348,762 to 349,385 _RS01575 Position (kb) 347 348Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 346.266 kb on - strand, within DDA3937_RS01560at 346.269 kb on - strand, within DDA3937_RS01560at 346.273 kb on + strand, within DDA3937_RS01560at 346.273 kb on + strand, within DDA3937_RS01560at 346.274 kb on - strand, within DDA3937_RS01560at 346.274 kb on - strand, within DDA3937_RS01560at 346.274 kb on - strand, within DDA3937_RS01560at 346.350 kb on + strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.351 kb on - strand, within DDA3937_RS01560at 346.463 kb on + strand, within DDA3937_RS01560at 346.464 kb on - strand, within DDA3937_RS01560at 346.464 kb on - strand, within DDA3937_RS01560at 346.464 kb on - strand, within DDA3937_RS01560at 346.530 kb on + strand, within DDA3937_RS01560at 346.531 kb on - strandat 346.531 kb on - strand, within DDA3937_RS01560at 346.531 kb on - strand, within DDA3937_RS01560at 346.633 kb on - strand, within DDA3937_RS01560at 346.633 kb on - strand, within DDA3937_RS01560at 346.662 kb on + strand, within DDA3937_RS01560at 346.663 kb on - strand, within DDA3937_RS01560at 346.746 kb on + strand, within DDA3937_RS01560at 346.747 kb on - strand, within DDA3937_RS01560at 346.747 kb on - strand, within DDA3937_RS01560at 346.747 kb on - strand, within DDA3937_RS01560at 346.832 kb on - strandat 346.843 kb on - strandat 346.846 kb on - strandat 346.846 kb on - strandat 346.846 kb on - strandat 346.857 kb on + strandat 346.858 kb on - strandat 346.858 kb on - strandat 346.858 kb on - strandat 346.863 kb on + strandat 346.900 kb on + strandat 346.900 kb on + strandat 346.902 kb on + strandat 346.902 kb on + strandat 346.902 kb on + strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.903 kb on - strandat 346.915 kb on - strandat 346.947 kb on - strandat 346.947 kb on - strandat 346.981 kb on + strandat 347.009 kb on - strandat 347.053 kb on + strandat 347.161 kb on + strandat 347.294 kb on - strand, within DDA3937_RS01565at 347.368 kb on + strand, within DDA3937_RS01565at 347.369 kb on - strand, within DDA3937_RS01565at 347.369 kb on - strand, within DDA3937_RS01565at 347.396 kb on + strand, within DDA3937_RS01565at 347.397 kb on - strand, within DDA3937_RS01565at 347.397 kb on - strand, within DDA3937_RS01565at 347.407 kb on + strand, within DDA3937_RS01565at 347.446 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.590 kb on - strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.965 kb on + strandat 347.969 kb on + strandat 347.970 kb on - strandat 347.980 kb on - strandat 347.980 kb on - strandat 347.980 kb on - strandat 347.983 kb on - strandat 347.983 kb on - strandat 348.054 kb on + strand, within DDA3937_RS01570at 348.054 kb on + strand, within DDA3937_RS01570at 348.055 kb on - strand, within DDA3937_RS01570at 348.119 kb on + strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.121 kb on + strand, within DDA3937_RS01570at 348.122 kb on - strand, within DDA3937_RS01570at 348.166 kb on - strand, within DDA3937_RS01570at 348.166 kb on - strand, within DDA3937_RS01570at 348.166 kb on - strand, within DDA3937_RS01570at 348.175 kb on + strand, within DDA3937_RS01570at 348.211 kb on + strand, within DDA3937_RS01570at 348.211 kb on + strand, within DDA3937_RS01570at 348.212 kb on - strand, within DDA3937_RS01570at 348.212 kb on - strand, within DDA3937_RS01570at 348.212 kb on - strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.216 kb on - strand, within DDA3937_RS01570at 348.216 kb on - strand, within DDA3937_RS01570at 348.368 kb on - strand, within DDA3937_RS01570at 348.574 kb on + strand, within DDA3937_RS01570at 348.574 kb on + strand, within DDA3937_RS01570at 348.575 kb on - strand, within DDA3937_RS01570at 348.575 kb on - strand, within DDA3937_RS01570at 348.638 kb on + strand, within DDA3937_RS01570at 348.796 kb on + strandat 348.796 kb on + strandat 348.797 kb on - strandat 348.823 kb on + strandat 348.833 kb on - strand, within DDA3937_RS01575at 348.879 kb on + strand, within DDA3937_RS01575at 348.880 kb on - strand, within DDA3937_RS01575at 348.880 kb on - strand, within DDA3937_RS01575at 348.905 kb on + strand, within DDA3937_RS01575at 348.917 kb on + strand, within DDA3937_RS01575at 348.917 kb on + strand, within DDA3937_RS01575

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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346,266 - DDA3937_RS01560 0.36 -1.7
346,269 - DDA3937_RS01560 0.36 -3.6
346,273 + DDA3937_RS01560 0.37 +0.6
346,273 + DDA3937_RS01560 0.37 -2.8
346,274 - DDA3937_RS01560 0.37 -0.5
346,274 - DDA3937_RS01560 0.37 +0.5
346,274 - DDA3937_RS01560 0.37 -0.0
346,350 + DDA3937_RS01560 0.45 -1.0
346,351 - DDA3937_RS01560 0.45 +2.2
346,351 - DDA3937_RS01560 0.45 +0.2
346,351 - DDA3937_RS01560 0.45 -1.0
346,351 - DDA3937_RS01560 0.45 -0.2
346,463 + DDA3937_RS01560 0.57 -1.0
346,464 - DDA3937_RS01560 0.57 +1.4
346,464 - DDA3937_RS01560 0.57 -0.2
346,464 - DDA3937_RS01560 0.57 -0.4
346,530 + DDA3937_RS01560 0.64 -0.6
346,531 - +0.6
346,531 - DDA3937_RS01560 0.64 +0.8
346,531 - DDA3937_RS01560 0.64 +0.2
346,633 - DDA3937_RS01560 0.74 +1.2
346,633 - DDA3937_RS01560 0.74 -0.4
346,662 + DDA3937_RS01560 0.77 +2.3
346,663 - DDA3937_RS01560 0.77 +0.7
346,746 + DDA3937_RS01560 0.86 +0.0
346,747 - DDA3937_RS01560 0.86 -1.1
346,747 - DDA3937_RS01560 0.86 +0.9
346,747 - DDA3937_RS01560 0.86 +0.4
346,832 - -3.1
346,843 - +1.6
346,846 - -2.1
346,846 - +1.7
346,846 - +1.1
346,857 + +3.6
346,858 - -1.6
346,858 - -1.6
346,858 - +0.2
346,863 + -0.4
346,900 + +0.6
346,900 + -0.2
346,902 + -2.0
346,902 + -0.4
346,902 + +0.2
346,903 - +1.1
346,903 - -0.7
346,903 - -0.9
346,903 - -0.2
346,903 - -1.4
346,903 - -1.4
346,915 - +0.1
346,947 - -1.2
346,947 - +2.0
346,981 + +0.2
347,009 - -0.4
347,053 + -0.5
347,161 + -1.0
347,294 - DDA3937_RS01565 0.16 -0.4
347,368 + DDA3937_RS01565 0.25 -1.1
347,369 - DDA3937_RS01565 0.26 -1.8
347,369 - DDA3937_RS01565 0.26 -1.9
347,396 + DDA3937_RS01565 0.29 -2.6
347,397 - DDA3937_RS01565 0.29 +1.0
347,397 - DDA3937_RS01565 0.29 +0.0
347,407 + DDA3937_RS01565 0.30 -2.3
347,446 + DDA3937_RS01565 0.35 -3.3
347,494 + DDA3937_RS01565 0.41 -2.8
347,494 + DDA3937_RS01565 0.41 -2.0
347,494 + DDA3937_RS01565 0.41 -2.7
347,494 + DDA3937_RS01565 0.41 -2.3
347,495 - DDA3937_RS01565 0.41 -0.2
347,495 - DDA3937_RS01565 0.41 -2.6
347,495 - DDA3937_RS01565 0.41 +0.0
347,589 + DDA3937_RS01565 0.53 -1.2
347,589 + DDA3937_RS01565 0.53 -1.3
347,589 + DDA3937_RS01565 0.53 +1.0
347,590 - DDA3937_RS01565 0.53 +0.4
347,795 + DDA3937_RS01565 0.78 -2.8
347,795 + DDA3937_RS01565 0.78 -0.9
347,795 + DDA3937_RS01565 0.78 -2.7
347,796 - DDA3937_RS01565 0.78 -2.6
347,796 - DDA3937_RS01565 0.78 -3.8
347,796 - DDA3937_RS01565 0.78 +0.0
347,801 + DDA3937_RS01565 0.79 -2.4
347,801 + DDA3937_RS01565 0.79 -1.6
347,801 + DDA3937_RS01565 0.79 -0.7
347,801 + DDA3937_RS01565 0.79 -2.9
347,801 + DDA3937_RS01565 0.79 +0.3
347,801 + DDA3937_RS01565 0.79 -4.1
347,801 + DDA3937_RS01565 0.79 -0.6
347,801 + DDA3937_RS01565 0.79 -2.6
347,802 - DDA3937_RS01565 0.79 -2.5
347,802 - DDA3937_RS01565 0.79 -2.4
347,802 - DDA3937_RS01565 0.79 -2.2
347,802 - DDA3937_RS01565 0.79 -2.8
347,802 - DDA3937_RS01565 0.79 +0.0
347,802 - DDA3937_RS01565 0.79 +0.5
347,802 - DDA3937_RS01565 0.79 -1.8
347,802 - DDA3937_RS01565 0.79 +0.6
347,965 + -3.8
347,969 + -2.0
347,970 - -2.9
347,980 - -1.7
347,980 - -0.1
347,980 - -3.2
347,983 - -1.2
347,983 - -1.6
348,054 + DDA3937_RS01570 0.10 -1.8
348,054 + DDA3937_RS01570 0.10 -3.8
348,055 - DDA3937_RS01570 0.10 -0.4
348,119 + DDA3937_RS01570 0.18 -1.9
348,120 - DDA3937_RS01570 0.19 -1.2
348,120 - DDA3937_RS01570 0.19 -2.3
348,120 - DDA3937_RS01570 0.19 -3.2
348,120 - DDA3937_RS01570 0.19 -1.7
348,121 + DDA3937_RS01570 0.19 -0.7
348,122 - DDA3937_RS01570 0.19 -1.7
348,166 - DDA3937_RS01570 0.24 -0.1
348,166 - DDA3937_RS01570 0.24 -1.7
348,166 - DDA3937_RS01570 0.24 -2.1
348,175 + DDA3937_RS01570 0.26 -1.4
348,211 + DDA3937_RS01570 0.30 -2.6
348,211 + DDA3937_RS01570 0.30 +1.4
348,212 - DDA3937_RS01570 0.30 -3.2
348,212 - DDA3937_RS01570 0.30 -2.0
348,212 - DDA3937_RS01570 0.30 -0.6
348,215 + DDA3937_RS01570 0.31 -0.2
348,215 + DDA3937_RS01570 0.31 -3.4
348,215 + DDA3937_RS01570 0.31 -2.4
348,215 + DDA3937_RS01570 0.31 -2.1
348,215 + DDA3937_RS01570 0.31 -2.3
348,216 - DDA3937_RS01570 0.31 -3.4
348,216 - DDA3937_RS01570 0.31 -2.0
348,368 - DDA3937_RS01570 0.50 -2.1
348,574 + DDA3937_RS01570 0.77 -2.3
348,574 + DDA3937_RS01570 0.77 +2.2
348,575 - DDA3937_RS01570 0.77 -2.9
348,575 - DDA3937_RS01570 0.77 -2.8
348,638 + DDA3937_RS01570 0.85 -2.4
348,796 + -1.2
348,796 + -3.5
348,797 - -0.4
348,823 + -1.0
348,833 - DDA3937_RS01575 0.11 +0.0
348,879 + DDA3937_RS01575 0.19 +0.7
348,880 - DDA3937_RS01575 0.19 -2.0
348,880 - DDA3937_RS01575 0.19 -2.7
348,905 + DDA3937_RS01575 0.23 -0.8
348,917 + DDA3937_RS01575 0.25 -0.8
348,917 + DDA3937_RS01575 0.25 -1.7

Or see this region's nucleotide sequence