Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01560 and DDA3937_RS01565 are separated by 281 nucleotides DDA3937_RS01565 and DDA3937_RS01570 are separated by 3 nucleotides DDA3937_RS01570 and DDA3937_RS01575 are separated by 4 nucleotides
DDA3937_RS01560: DDA3937_RS01560 - calcium/sodium antiporter, at 345,918 to 346,880
_RS01560
DDA3937_RS01565: DDA3937_RS01565 - phospholipid ABC transporter ATP-binding protein MlaF, at 347,162 to 347,971
_RS01565
DDA3937_RS01570: DDA3937_RS01570 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 347,975 to 348,757
_RS01570
DDA3937_RS01575: DDA3937_RS01575 - outer membrane lipid asymmetry maintenance protein MlaD, at 348,762 to 349,385
_RS01575
Position (kb)
347
348 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 346.266 kb on - strand, within DDA3937_RS01560 at 346.269 kb on - strand, within DDA3937_RS01560 at 346.273 kb on + strand, within DDA3937_RS01560 at 346.273 kb on + strand, within DDA3937_RS01560 at 346.274 kb on - strand, within DDA3937_RS01560 at 346.274 kb on - strand, within DDA3937_RS01560 at 346.274 kb on - strand, within DDA3937_RS01560 at 346.350 kb on + strand, within DDA3937_RS01560 at 346.351 kb on - strand, within DDA3937_RS01560 at 346.351 kb on - strand, within DDA3937_RS01560 at 346.351 kb on - strand, within DDA3937_RS01560 at 346.351 kb on - strand, within DDA3937_RS01560 at 346.463 kb on + strand, within DDA3937_RS01560 at 346.464 kb on - strand, within DDA3937_RS01560 at 346.464 kb on - strand, within DDA3937_RS01560 at 346.464 kb on - strand, within DDA3937_RS01560 at 346.530 kb on + strand, within DDA3937_RS01560 at 346.531 kb on - strand at 346.531 kb on - strand, within DDA3937_RS01560 at 346.531 kb on - strand, within DDA3937_RS01560 at 346.633 kb on - strand, within DDA3937_RS01560 at 346.633 kb on - strand, within DDA3937_RS01560 at 346.662 kb on + strand, within DDA3937_RS01560 at 346.663 kb on - strand, within DDA3937_RS01560 at 346.746 kb on + strand, within DDA3937_RS01560 at 346.747 kb on - strand, within DDA3937_RS01560 at 346.747 kb on - strand, within DDA3937_RS01560 at 346.747 kb on - strand, within DDA3937_RS01560 at 346.832 kb on - strand at 346.843 kb on - strand at 346.846 kb on - strand at 346.846 kb on - strand at 346.846 kb on - strand at 346.857 kb on + strand at 346.858 kb on - strand at 346.858 kb on - strand at 346.858 kb on - strand at 346.863 kb on + strand at 346.900 kb on + strand at 346.900 kb on + strand at 346.902 kb on + strand at 346.902 kb on + strand at 346.902 kb on + strand at 346.903 kb on - strand at 346.903 kb on - strand at 346.903 kb on - strand at 346.903 kb on - strand at 346.903 kb on - strand at 346.903 kb on - strand at 346.915 kb on - strand at 346.947 kb on - strand at 346.947 kb on - strand at 346.981 kb on + strand at 347.009 kb on - strand at 347.053 kb on + strand at 347.161 kb on + strand at 347.294 kb on - strand, within DDA3937_RS01565 at 347.368 kb on + strand, within DDA3937_RS01565 at 347.369 kb on - strand, within DDA3937_RS01565 at 347.369 kb on - strand, within DDA3937_RS01565 at 347.396 kb on + strand, within DDA3937_RS01565 at 347.397 kb on - strand, within DDA3937_RS01565 at 347.397 kb on - strand, within DDA3937_RS01565 at 347.407 kb on + strand, within DDA3937_RS01565 at 347.446 kb on + strand, within DDA3937_RS01565 at 347.494 kb on + strand, within DDA3937_RS01565 at 347.494 kb on + strand, within DDA3937_RS01565 at 347.494 kb on + strand, within DDA3937_RS01565 at 347.494 kb on + strand, within DDA3937_RS01565 at 347.495 kb on - strand, within DDA3937_RS01565 at 347.495 kb on - strand, within DDA3937_RS01565 at 347.495 kb on - strand, within DDA3937_RS01565 at 347.589 kb on + strand, within DDA3937_RS01565 at 347.589 kb on + strand, within DDA3937_RS01565 at 347.589 kb on + strand, within DDA3937_RS01565 at 347.590 kb on - strand, within DDA3937_RS01565 at 347.795 kb on + strand, within DDA3937_RS01565 at 347.795 kb on + strand, within DDA3937_RS01565 at 347.795 kb on + strand, within DDA3937_RS01565 at 347.796 kb on - strand, within DDA3937_RS01565 at 347.796 kb on - strand, within DDA3937_RS01565 at 347.796 kb on - strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.801 kb on + strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.802 kb on - strand, within DDA3937_RS01565 at 347.965 kb on + strand at 347.969 kb on + strand at 347.970 kb on - strand at 347.980 kb on - strand at 347.980 kb on - strand at 347.980 kb on - strand at 347.983 kb on - strand at 347.983 kb on - strand at 348.054 kb on + strand, within DDA3937_RS01570 at 348.054 kb on + strand, within DDA3937_RS01570 at 348.055 kb on - strand, within DDA3937_RS01570 at 348.119 kb on + strand, within DDA3937_RS01570 at 348.120 kb on - strand, within DDA3937_RS01570 at 348.120 kb on - strand, within DDA3937_RS01570 at 348.120 kb on - strand, within DDA3937_RS01570 at 348.120 kb on - strand, within DDA3937_RS01570 at 348.121 kb on + strand, within DDA3937_RS01570 at 348.122 kb on - strand, within DDA3937_RS01570 at 348.166 kb on - strand, within DDA3937_RS01570 at 348.166 kb on - strand, within DDA3937_RS01570 at 348.166 kb on - strand, within DDA3937_RS01570 at 348.175 kb on + strand, within DDA3937_RS01570 at 348.211 kb on + strand, within DDA3937_RS01570 at 348.211 kb on + strand, within DDA3937_RS01570 at 348.212 kb on - strand, within DDA3937_RS01570 at 348.212 kb on - strand, within DDA3937_RS01570 at 348.212 kb on - strand, within DDA3937_RS01570 at 348.215 kb on + strand, within DDA3937_RS01570 at 348.215 kb on + strand, within DDA3937_RS01570 at 348.215 kb on + strand, within DDA3937_RS01570 at 348.215 kb on + strand, within DDA3937_RS01570 at 348.215 kb on + strand, within DDA3937_RS01570 at 348.216 kb on - strand, within DDA3937_RS01570 at 348.216 kb on - strand, within DDA3937_RS01570 at 348.368 kb on - strand, within DDA3937_RS01570 at 348.574 kb on + strand, within DDA3937_RS01570 at 348.574 kb on + strand, within DDA3937_RS01570 at 348.575 kb on - strand, within DDA3937_RS01570 at 348.575 kb on - strand, within DDA3937_RS01570 at 348.638 kb on + strand, within DDA3937_RS01570 at 348.796 kb on + strand at 348.796 kb on + strand at 348.797 kb on - strand at 348.823 kb on + strand at 348.833 kb on - strand, within DDA3937_RS01575 at 348.879 kb on + strand, within DDA3937_RS01575 at 348.880 kb on - strand, within DDA3937_RS01575 at 348.880 kb on - strand, within DDA3937_RS01575 at 348.905 kb on + strand, within DDA3937_RS01575 at 348.917 kb on + strand, within DDA3937_RS01575 at 348.917 kb on + strand, within DDA3937_RS01575
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 346,266 - DDA3937_RS01560 0.36 -1.7 346,269 - DDA3937_RS01560 0.36 -3.6 346,273 + DDA3937_RS01560 0.37 +0.6 346,273 + DDA3937_RS01560 0.37 -2.8 346,274 - DDA3937_RS01560 0.37 -0.5 346,274 - DDA3937_RS01560 0.37 +0.5 346,274 - DDA3937_RS01560 0.37 -0.0 346,350 + DDA3937_RS01560 0.45 -1.0 346,351 - DDA3937_RS01560 0.45 +2.2 346,351 - DDA3937_RS01560 0.45 +0.2 346,351 - DDA3937_RS01560 0.45 -1.0 346,351 - DDA3937_RS01560 0.45 -0.2 346,463 + DDA3937_RS01560 0.57 -1.0 346,464 - DDA3937_RS01560 0.57 +1.4 346,464 - DDA3937_RS01560 0.57 -0.2 346,464 - DDA3937_RS01560 0.57 -0.4 346,530 + DDA3937_RS01560 0.64 -0.6 346,531 - +0.6 346,531 - DDA3937_RS01560 0.64 +0.8 346,531 - DDA3937_RS01560 0.64 +0.2 346,633 - DDA3937_RS01560 0.74 +1.2 346,633 - DDA3937_RS01560 0.74 -0.4 346,662 + DDA3937_RS01560 0.77 +2.3 346,663 - DDA3937_RS01560 0.77 +0.7 346,746 + DDA3937_RS01560 0.86 +0.0 346,747 - DDA3937_RS01560 0.86 -1.1 346,747 - DDA3937_RS01560 0.86 +0.9 346,747 - DDA3937_RS01560 0.86 +0.4 346,832 - -3.1 346,843 - +1.6 346,846 - -2.1 346,846 - +1.7 346,846 - +1.1 346,857 + +3.6 346,858 - -1.6 346,858 - -1.6 346,858 - +0.2 346,863 + -0.4 346,900 + +0.6 346,900 + -0.2 346,902 + -2.0 346,902 + -0.4 346,902 + +0.2 346,903 - +1.1 346,903 - -0.7 346,903 - -0.9 346,903 - -0.2 346,903 - -1.4 346,903 - -1.4 346,915 - +0.1 346,947 - -1.2 346,947 - +2.0 346,981 + +0.2 347,009 - -0.4 347,053 + -0.5 347,161 + -1.0 347,294 - DDA3937_RS01565 0.16 -0.4 347,368 + DDA3937_RS01565 0.25 -1.1 347,369 - DDA3937_RS01565 0.26 -1.8 347,369 - DDA3937_RS01565 0.26 -1.9 347,396 + DDA3937_RS01565 0.29 -2.6 347,397 - DDA3937_RS01565 0.29 +1.0 347,397 - DDA3937_RS01565 0.29 +0.0 347,407 + DDA3937_RS01565 0.30 -2.3 347,446 + DDA3937_RS01565 0.35 -3.3 347,494 + DDA3937_RS01565 0.41 -2.8 347,494 + DDA3937_RS01565 0.41 -2.0 347,494 + DDA3937_RS01565 0.41 -2.7 347,494 + DDA3937_RS01565 0.41 -2.3 347,495 - DDA3937_RS01565 0.41 -0.2 347,495 - DDA3937_RS01565 0.41 -2.6 347,495 - DDA3937_RS01565 0.41 +0.0 347,589 + DDA3937_RS01565 0.53 -1.2 347,589 + DDA3937_RS01565 0.53 -1.3 347,589 + DDA3937_RS01565 0.53 +1.0 347,590 - DDA3937_RS01565 0.53 +0.4 347,795 + DDA3937_RS01565 0.78 -2.8 347,795 + DDA3937_RS01565 0.78 -0.9 347,795 + DDA3937_RS01565 0.78 -2.7 347,796 - DDA3937_RS01565 0.78 -2.6 347,796 - DDA3937_RS01565 0.78 -3.8 347,796 - DDA3937_RS01565 0.78 +0.0 347,801 + DDA3937_RS01565 0.79 -2.4 347,801 + DDA3937_RS01565 0.79 -1.6 347,801 + DDA3937_RS01565 0.79 -0.7 347,801 + DDA3937_RS01565 0.79 -2.9 347,801 + DDA3937_RS01565 0.79 +0.3 347,801 + DDA3937_RS01565 0.79 -4.1 347,801 + DDA3937_RS01565 0.79 -0.6 347,801 + DDA3937_RS01565 0.79 -2.6 347,802 - DDA3937_RS01565 0.79 -2.5 347,802 - DDA3937_RS01565 0.79 -2.4 347,802 - DDA3937_RS01565 0.79 -2.2 347,802 - DDA3937_RS01565 0.79 -2.8 347,802 - DDA3937_RS01565 0.79 +0.0 347,802 - DDA3937_RS01565 0.79 +0.5 347,802 - DDA3937_RS01565 0.79 -1.8 347,802 - DDA3937_RS01565 0.79 +0.6 347,965 + -3.8 347,969 + -2.0 347,970 - -2.9 347,980 - -1.7 347,980 - -0.1 347,980 - -3.2 347,983 - -1.2 347,983 - -1.6 348,054 + DDA3937_RS01570 0.10 -1.8 348,054 + DDA3937_RS01570 0.10 -3.8 348,055 - DDA3937_RS01570 0.10 -0.4 348,119 + DDA3937_RS01570 0.18 -1.9 348,120 - DDA3937_RS01570 0.19 -1.2 348,120 - DDA3937_RS01570 0.19 -2.3 348,120 - DDA3937_RS01570 0.19 -3.2 348,120 - DDA3937_RS01570 0.19 -1.7 348,121 + DDA3937_RS01570 0.19 -0.7 348,122 - DDA3937_RS01570 0.19 -1.7 348,166 - DDA3937_RS01570 0.24 -0.1 348,166 - DDA3937_RS01570 0.24 -1.7 348,166 - DDA3937_RS01570 0.24 -2.1 348,175 + DDA3937_RS01570 0.26 -1.4 348,211 + DDA3937_RS01570 0.30 -2.6 348,211 + DDA3937_RS01570 0.30 +1.4 348,212 - DDA3937_RS01570 0.30 -3.2 348,212 - DDA3937_RS01570 0.30 -2.0 348,212 - DDA3937_RS01570 0.30 -0.6 348,215 + DDA3937_RS01570 0.31 -0.2 348,215 + DDA3937_RS01570 0.31 -3.4 348,215 + DDA3937_RS01570 0.31 -2.4 348,215 + DDA3937_RS01570 0.31 -2.1 348,215 + DDA3937_RS01570 0.31 -2.3 348,216 - DDA3937_RS01570 0.31 -3.4 348,216 - DDA3937_RS01570 0.31 -2.0 348,368 - DDA3937_RS01570 0.50 -2.1 348,574 + DDA3937_RS01570 0.77 -2.3 348,574 + DDA3937_RS01570 0.77 +2.2 348,575 - DDA3937_RS01570 0.77 -2.9 348,575 - DDA3937_RS01570 0.77 -2.8 348,638 + DDA3937_RS01570 0.85 -2.4 348,796 + -1.2 348,796 + -3.5 348,797 - -0.4 348,823 + -1.0 348,833 - DDA3937_RS01575 0.11 +0.0 348,879 + DDA3937_RS01575 0.19 +0.7 348,880 - DDA3937_RS01575 0.19 -2.0 348,880 - DDA3937_RS01575 0.19 -2.7 348,905 + DDA3937_RS01575 0.23 -0.8 348,917 + DDA3937_RS01575 0.25 -0.8 348,917 + DDA3937_RS01575 0.25 -1.7
Or see this region's nucleotide sequence