Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01470 and DDA3937_RS01475 are separated by 31 nucleotides DDA3937_RS01475 and DDA3937_RS01480 are separated by 13 nucleotides DDA3937_RS01480 and DDA3937_RS01485 are separated by 6 nucleotides DDA3937_RS01485 and DDA3937_RS01490 are separated by 116 nucleotides
DDA3937_RS01470: DDA3937_RS01470 - AaeX family protein, at 331,263 to 331,466
_RS01470
DDA3937_RS01475: DDA3937_RS01475 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 331,498 to 332,421
_RS01475
DDA3937_RS01480: DDA3937_RS01480 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 332,435 to 334,384
_RS01480
DDA3937_RS01485: DDA3937_RS01485 - DUF1543 domain-containing protein, at 334,391 to 334,891
_RS01485
DDA3937_RS01490: DDA3937_RS01490 - LysE family transporter, at 335,008 to 335,634
_RS01490
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 331.440 kb on + strand, within DDA3937_RS01470 at 331.440 kb on + strand, within DDA3937_RS01470 at 331.440 kb on + strand, within DDA3937_RS01470 at 331.532 kb on + strand at 331.532 kb on + strand at 331.571 kb on + strand at 331.571 kb on + strand at 331.582 kb on + strand at 331.583 kb on - strand at 331.774 kb on + strand, within DDA3937_RS01475 at 331.774 kb on + strand, within DDA3937_RS01475 at 331.774 kb on + strand, within DDA3937_RS01475 at 331.774 kb on + strand, within DDA3937_RS01475 at 331.775 kb on - strand, within DDA3937_RS01475 at 331.775 kb on - strand, within DDA3937_RS01475 at 331.775 kb on - strand, within DDA3937_RS01475 at 331.777 kb on + strand, within DDA3937_RS01475 at 331.777 kb on + strand, within DDA3937_RS01475 at 331.951 kb on - strand, within DDA3937_RS01475 at 331.951 kb on - strand, within DDA3937_RS01475 at 332.011 kb on + strand, within DDA3937_RS01475 at 332.011 kb on + strand, within DDA3937_RS01475 at 332.012 kb on - strand, within DDA3937_RS01475 at 332.063 kb on - strand, within DDA3937_RS01475 at 332.074 kb on + strand, within DDA3937_RS01475 at 332.074 kb on + strand, within DDA3937_RS01475 at 332.075 kb on - strand, within DDA3937_RS01475 at 332.075 kb on - strand, within DDA3937_RS01475 at 332.075 kb on - strand, within DDA3937_RS01475 at 332.075 kb on - strand, within DDA3937_RS01475 at 332.075 kb on - strand, within DDA3937_RS01475 at 332.075 kb on - strand, within DDA3937_RS01475 at 332.076 kb on + strand, within DDA3937_RS01475 at 332.077 kb on - strand, within DDA3937_RS01475 at 332.169 kb on + strand, within DDA3937_RS01475 at 332.199 kb on + strand, within DDA3937_RS01475 at 332.199 kb on + strand, within DDA3937_RS01475 at 332.200 kb on - strand at 332.200 kb on - strand, within DDA3937_RS01475 at 332.200 kb on - strand, within DDA3937_RS01475 at 332.200 kb on - strand, within DDA3937_RS01475 at 332.200 kb on - strand, within DDA3937_RS01475 at 332.276 kb on + strand, within DDA3937_RS01475 at 332.355 kb on + strand at 332.355 kb on + strand at 332.431 kb on + strand at 332.431 kb on + strand at 332.431 kb on + strand at 332.431 kb on + strand at 332.431 kb on + strand at 332.431 kb on + strand at 332.482 kb on + strand at 332.482 kb on + strand at 332.483 kb on - strand at 332.766 kb on + strand, within DDA3937_RS01480 at 332.783 kb on + strand, within DDA3937_RS01480 at 332.783 kb on + strand at 332.784 kb on - strand, within DDA3937_RS01480 at 332.784 kb on - strand, within DDA3937_RS01480 at 332.944 kb on - strand, within DDA3937_RS01480 at 332.990 kb on + strand, within DDA3937_RS01480 at 332.991 kb on - strand, within DDA3937_RS01480 at 333.065 kb on - strand, within DDA3937_RS01480 at 333.096 kb on + strand, within DDA3937_RS01480 at 333.096 kb on + strand, within DDA3937_RS01480 at 333.241 kb on + strand, within DDA3937_RS01480 at 333.241 kb on + strand, within DDA3937_RS01480 at 333.241 kb on + strand, within DDA3937_RS01480 at 333.241 kb on + strand, within DDA3937_RS01480 at 333.242 kb on - strand, within DDA3937_RS01480 at 333.242 kb on - strand, within DDA3937_RS01480 at 333.242 kb on - strand at 333.242 kb on - strand, within DDA3937_RS01480 at 333.675 kb on + strand, within DDA3937_RS01480 at 333.817 kb on + strand, within DDA3937_RS01480 at 333.943 kb on + strand, within DDA3937_RS01480 at 333.969 kb on + strand, within DDA3937_RS01480 at 333.969 kb on + strand, within DDA3937_RS01480 at 333.970 kb on - strand, within DDA3937_RS01480 at 333.973 kb on + strand, within DDA3937_RS01480 at 333.974 kb on - strand, within DDA3937_RS01480 at 334.052 kb on + strand, within DDA3937_RS01480 at 334.052 kb on + strand, within DDA3937_RS01480 at 334.052 kb on + strand, within DDA3937_RS01480 at 334.053 kb on - strand, within DDA3937_RS01480 at 334.053 kb on - strand, within DDA3937_RS01480 at 334.053 kb on - strand, within DDA3937_RS01480 at 334.103 kb on + strand, within DDA3937_RS01480 at 334.104 kb on - strand, within DDA3937_RS01480 at 334.281 kb on - strand at 334.281 kb on - strand at 334.290 kb on + strand at 334.291 kb on - strand at 334.291 kb on - strand at 334.392 kb on + strand at 334.393 kb on - strand at 334.404 kb on + strand at 334.428 kb on - strand at 334.610 kb on + strand, within DDA3937_RS01485 at 334.610 kb on + strand, within DDA3937_RS01485 at 334.611 kb on - strand, within DDA3937_RS01485 at 334.646 kb on - strand, within DDA3937_RS01485 at 334.699 kb on + strand, within DDA3937_RS01485 at 334.704 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.731 kb on + strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.732 kb on - strand, within DDA3937_RS01485 at 334.735 kb on + strand, within DDA3937_RS01485 at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.869 kb on + strand at 334.870 kb on - strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.872 kb on + strand at 334.873 kb on - strand at 334.873 kb on - strand at 334.873 kb on - strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.876 kb on + strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.877 kb on - strand at 334.880 kb on + strand at 334.880 kb on + strand at 334.880 kb on + strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.881 kb on - strand at 334.943 kb on + strand at 334.988 kb on + strand at 335.007 kb on - strand at 335.032 kb on + strand at 335.032 kb on + strand at 335.089 kb on - strand, within DDA3937_RS01490 at 335.231 kb on + strand, within DDA3937_RS01490 at 335.232 kb on - strand, within DDA3937_RS01490 at 335.252 kb on - strand, within DDA3937_RS01490 at 335.252 kb on - strand, within DDA3937_RS01490 at 335.268 kb on + strand, within DDA3937_RS01490 at 335.350 kb on + strand, within DDA3937_RS01490 at 335.350 kb on + strand, within DDA3937_RS01490 at 335.365 kb on - strand, within DDA3937_RS01490 at 335.365 kb on - strand, within DDA3937_RS01490 at 335.365 kb on - strand, within DDA3937_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 331,440 + DDA3937_RS01470 0.87 +0.3 331,440 + DDA3937_RS01470 0.87 -2.3 331,440 + DDA3937_RS01470 0.87 -2.8 331,532 + -0.1 331,532 + -0.9 331,571 + -1.4 331,571 + +0.7 331,582 + -1.0 331,583 - -1.3 331,774 + DDA3937_RS01475 0.30 +0.4 331,774 + DDA3937_RS01475 0.30 +0.9 331,774 + DDA3937_RS01475 0.30 -0.9 331,774 + DDA3937_RS01475 0.30 -1.4 331,775 - DDA3937_RS01475 0.30 -1.0 331,775 - DDA3937_RS01475 0.30 -0.0 331,775 - DDA3937_RS01475 0.30 -0.8 331,777 + DDA3937_RS01475 0.30 +0.3 331,777 + DDA3937_RS01475 0.30 +0.4 331,951 - DDA3937_RS01475 0.49 +1.4 331,951 - DDA3937_RS01475 0.49 -2.0 332,011 + DDA3937_RS01475 0.56 -1.3 332,011 + DDA3937_RS01475 0.56 +0.5 332,012 - DDA3937_RS01475 0.56 -0.2 332,063 - DDA3937_RS01475 0.61 -2.3 332,074 + DDA3937_RS01475 0.62 -3.2 332,074 + DDA3937_RS01475 0.62 -2.0 332,075 - DDA3937_RS01475 0.62 -0.5 332,075 - DDA3937_RS01475 0.62 -2.0 332,075 - DDA3937_RS01475 0.62 -1.3 332,075 - DDA3937_RS01475 0.62 -0.8 332,075 - DDA3937_RS01475 0.62 +0.6 332,075 - DDA3937_RS01475 0.62 -1.4 332,076 + DDA3937_RS01475 0.63 -0.3 332,077 - DDA3937_RS01475 0.63 +0.4 332,169 + DDA3937_RS01475 0.73 -2.4 332,199 + DDA3937_RS01475 0.76 -0.2 332,199 + DDA3937_RS01475 0.76 -1.3 332,200 - +1.6 332,200 - DDA3937_RS01475 0.76 -0.2 332,200 - DDA3937_RS01475 0.76 -0.3 332,200 - DDA3937_RS01475 0.76 -1.6 332,200 - DDA3937_RS01475 0.76 -1.0 332,276 + DDA3937_RS01475 0.84 -0.3 332,355 + -2.8 332,355 + -2.1 332,431 + +0.6 332,431 + -1.3 332,431 + +1.4 332,431 + -0.6 332,431 + -0.4 332,431 + +0.9 332,482 + +2.8 332,482 + -1.3 332,483 - -1.4 332,766 + DDA3937_RS01480 0.17 -0.6 332,783 + DDA3937_RS01480 0.18 -1.8 332,783 + -0.4 332,784 - DDA3937_RS01480 0.18 -1.0 332,784 - DDA3937_RS01480 0.18 -1.7 332,944 - DDA3937_RS01480 0.26 -0.2 332,990 + DDA3937_RS01480 0.28 -1.4 332,991 - DDA3937_RS01480 0.29 -2.1 333,065 - DDA3937_RS01480 0.32 -0.6 333,096 + DDA3937_RS01480 0.34 -2.9 333,096 + DDA3937_RS01480 0.34 -2.7 333,241 + DDA3937_RS01480 0.41 -1.8 333,241 + DDA3937_RS01480 0.41 +1.7 333,241 + DDA3937_RS01480 0.41 -2.0 333,241 + DDA3937_RS01480 0.41 -0.9 333,242 - DDA3937_RS01480 0.41 +0.1 333,242 - DDA3937_RS01480 0.41 -0.9 333,242 - +1.6 333,242 - DDA3937_RS01480 0.41 -2.5 333,675 + DDA3937_RS01480 0.64 +1.4 333,817 + DDA3937_RS01480 0.71 -1.0 333,943 + DDA3937_RS01480 0.77 +1.0 333,969 + DDA3937_RS01480 0.79 -0.4 333,969 + DDA3937_RS01480 0.79 +0.6 333,970 - DDA3937_RS01480 0.79 -0.6 333,973 + DDA3937_RS01480 0.79 -2.0 333,974 - DDA3937_RS01480 0.79 +0.0 334,052 + DDA3937_RS01480 0.83 -0.1 334,052 + DDA3937_RS01480 0.83 +0.2 334,052 + DDA3937_RS01480 0.83 +0.0 334,053 - DDA3937_RS01480 0.83 -2.3 334,053 - DDA3937_RS01480 0.83 +1.1 334,053 - DDA3937_RS01480 0.83 -2.1 334,103 + DDA3937_RS01480 0.86 -1.0 334,104 - DDA3937_RS01480 0.86 +0.2 334,281 - -2.8 334,281 - +4.9 334,290 + -1.6 334,291 - +1.4 334,291 - +1.6 334,392 + +1.8 334,393 - -0.7 334,404 + -2.1 334,428 - +0.7 334,610 + DDA3937_RS01485 0.44 -1.1 334,610 + DDA3937_RS01485 0.44 -0.2 334,611 - DDA3937_RS01485 0.44 -2.6 334,646 - DDA3937_RS01485 0.51 -0.6 334,699 + DDA3937_RS01485 0.61 -0.5 334,704 + DDA3937_RS01485 0.62 -0.7 334,731 + DDA3937_RS01485 0.68 +0.4 334,731 + DDA3937_RS01485 0.68 -0.3 334,731 + DDA3937_RS01485 0.68 -0.3 334,731 + DDA3937_RS01485 0.68 -1.7 334,731 + DDA3937_RS01485 0.68 -0.1 334,731 + DDA3937_RS01485 0.68 +0.5 334,731 + DDA3937_RS01485 0.68 -0.6 334,731 + DDA3937_RS01485 0.68 -2.9 334,731 + DDA3937_RS01485 0.68 -0.2 334,731 + DDA3937_RS01485 0.68 +0.5 334,731 + DDA3937_RS01485 0.68 -1.0 334,731 + DDA3937_RS01485 0.68 -0.0 334,731 + DDA3937_RS01485 0.68 -1.2 334,731 + DDA3937_RS01485 0.68 -1.9 334,731 + DDA3937_RS01485 0.68 -1.4 334,731 + DDA3937_RS01485 0.68 -0.6 334,732 - DDA3937_RS01485 0.68 +3.6 334,732 - DDA3937_RS01485 0.68 -1.9 334,732 - DDA3937_RS01485 0.68 -1.0 334,732 - DDA3937_RS01485 0.68 +0.9 334,732 - DDA3937_RS01485 0.68 -0.4 334,735 + DDA3937_RS01485 0.69 -0.9 334,869 + +0.4 334,869 + -2.1 334,869 + +0.7 334,869 + +0.7 334,869 + -0.0 334,869 + +0.6 334,869 + -0.5 334,869 + -0.6 334,869 + -0.4 334,869 + -1.1 334,869 + +0.4 334,869 + -1.0 334,870 - +2.6 334,872 + -1.3 334,872 + +1.5 334,872 + +0.2 334,872 + -0.1 334,872 + -0.6 334,872 + -0.3 334,872 + -0.1 334,873 - +0.6 334,873 - +0.2 334,873 - -0.0 334,876 + -0.7 334,876 + -0.1 334,876 + -0.1 334,876 + +0.0 334,876 + +0.0 334,876 + +0.8 334,876 + -1.2 334,876 + -0.1 334,876 + +0.6 334,876 + -2.9 334,876 + -0.6 334,876 + -0.1 334,876 + +1.0 334,876 + -0.6 334,876 + +0.1 334,876 + +0.9 334,876 + -3.2 334,876 + -0.7 334,876 + -0.1 334,876 + +0.3 334,876 + +0.8 334,876 + -0.8 334,876 + -0.6 334,876 + -1.0 334,876 + -0.5 334,876 + -1.5 334,876 + -0.2 334,876 + -0.1 334,876 + +0.2 334,877 - +2.5 334,877 - -0.6 334,877 - +0.4 334,877 - -1.9 334,877 - -0.2 334,880 + +0.1 334,880 + -0.5 334,880 + +0.8 334,881 - -1.9 334,881 - -3.3 334,881 - -0.9 334,881 - -0.4 334,881 - -2.0 334,943 + -0.7 334,988 + -0.4 335,007 - -0.2 335,032 + -1.4 335,032 + +0.0 335,089 - DDA3937_RS01490 0.13 -2.0 335,231 + DDA3937_RS01490 0.36 -2.6 335,232 - DDA3937_RS01490 0.36 +1.0 335,252 - DDA3937_RS01490 0.39 +0.3 335,252 - DDA3937_RS01490 0.39 +0.9 335,268 + DDA3937_RS01490 0.41 -1.2 335,350 + DDA3937_RS01490 0.55 +1.0 335,350 + DDA3937_RS01490 0.55 -0.6 335,365 - DDA3937_RS01490 0.57 -0.4 335,365 - DDA3937_RS01490 0.57 -2.1 335,365 - DDA3937_RS01490 0.57 -0.4
Or see this region's nucleotide sequence