Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01105 and DDA3937_RS01110 are separated by 177 nucleotides DDA3937_RS01110 and DDA3937_RS01115 are separated by 43 nucleotides
DDA3937_RS01105: DDA3937_RS01105 - DNA-directed RNA polymerase subunit beta', at 251,342 to 255,565
_RS01105
DDA3937_RS01110: DDA3937_RS01110 - hypothetical protein, at 255,743 to 256,000
_RS01110
DDA3937_RS01115: DDA3937_RS01115 - DUF1176 domain-containing protein, at 256,044 to 257,141
_RS01115
Position (kb) 255
256
257 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 255.624 kb on - strand at 255.625 kb on + strand at 255.625 kb on + strand at 255.626 kb on - strand at 255.632 kb on - strand at 255.651 kb on + strand at 255.652 kb on - strand at 255.682 kb on + strand at 255.682 kb on + strand at 255.682 kb on + strand at 255.743 kb on - strand at 255.800 kb on - strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.898 kb on + strand, within DDA3937_RS01110 at 255.998 kb on + strand at 255.998 kb on + strand at 255.998 kb on + strand at 255.999 kb on - strand at 255.999 kb on - strand at 255.999 kb on - strand at 255.999 kb on - strand at 256.007 kb on + strand at 256.007 kb on + strand at 256.008 kb on - strand at 256.009 kb on + strand at 256.009 kb on + strand at 256.009 kb on + strand at 256.010 kb on - strand at 256.010 kb on - strand at 256.010 kb on - strand at 256.150 kb on + strand at 256.150 kb on + strand at 256.151 kb on - strand at 256.151 kb on - strand at 256.169 kb on + strand, within DDA3937_RS01115 at 256.205 kb on + strand, within DDA3937_RS01115 at 256.216 kb on - strand, within DDA3937_RS01115 at 256.216 kb on - strand, within DDA3937_RS01115 at 256.232 kb on - strand, within DDA3937_RS01115 at 256.302 kb on + strand, within DDA3937_RS01115 at 256.303 kb on - strand, within DDA3937_RS01115 at 256.371 kb on + strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.564 kb on + strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.636 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.892 kb on + strand, within DDA3937_RS01115 at 256.893 kb on - strand, within DDA3937_RS01115 at 256.947 kb on + strand, within DDA3937_RS01115 at 256.948 kb on - strand, within DDA3937_RS01115 at 256.971 kb on + strand, within DDA3937_RS01115 at 256.972 kb on - strand, within DDA3937_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 255,624 - -0.7 255,625 + -0.3 255,625 + +1.9 255,626 - -0.2 255,632 - +2.3 255,651 + -2.3 255,652 - -1.2 255,682 + -1.2 255,682 + -3.4 255,682 + -1.0 255,743 - -1.8 255,800 - DDA3937_RS01110 0.22 -0.8 255,820 + DDA3937_RS01110 0.30 -0.2 255,820 + DDA3937_RS01110 0.30 +3.0 255,820 + DDA3937_RS01110 0.30 +0.5 255,898 + DDA3937_RS01110 0.60 +2.2 255,998 + +0.0 255,998 + -4.0 255,998 + -0.9 255,999 - -3.3 255,999 - +0.6 255,999 - +0.6 255,999 - +0.9 256,007 + +1.5 256,007 + -0.7 256,008 - -2.4 256,009 + -1.6 256,009 + -1.2 256,009 + -2.3 256,010 - -1.0 256,010 - -1.5 256,010 - -3.8 256,150 + -0.2 256,150 + +1.0 256,151 - +0.0 256,151 - -3.0 256,169 + DDA3937_RS01115 0.11 -0.3 256,205 + DDA3937_RS01115 0.15 -0.6 256,216 - DDA3937_RS01115 0.16 -1.4 256,216 - DDA3937_RS01115 0.16 -1.4 256,232 - DDA3937_RS01115 0.17 +0.3 256,302 + DDA3937_RS01115 0.23 +0.4 256,303 - DDA3937_RS01115 0.24 -1.1 256,371 + DDA3937_RS01115 0.30 -1.6 256,372 - DDA3937_RS01115 0.30 -3.0 256,372 - DDA3937_RS01115 0.30 +2.0 256,372 - DDA3937_RS01115 0.30 -0.5 256,372 - DDA3937_RS01115 0.30 +0.8 256,372 - DDA3937_RS01115 0.30 -2.3 256,564 + DDA3937_RS01115 0.47 +1.6 256,565 - DDA3937_RS01115 0.47 +0.0 256,565 - DDA3937_RS01115 0.47 -0.6 256,565 - DDA3937_RS01115 0.47 -0.7 256,635 + DDA3937_RS01115 0.54 +0.6 256,635 + DDA3937_RS01115 0.54 -1.6 256,635 + DDA3937_RS01115 0.54 +0.8 256,635 + DDA3937_RS01115 0.54 -0.7 256,636 - DDA3937_RS01115 0.54 +0.3 256,670 - DDA3937_RS01115 0.57 +0.7 256,670 - DDA3937_RS01115 0.57 +2.1 256,670 - DDA3937_RS01115 0.57 -0.7 256,892 + DDA3937_RS01115 0.77 -1.4 256,893 - DDA3937_RS01115 0.77 +0.2 256,947 + DDA3937_RS01115 0.82 +0.7 256,948 - DDA3937_RS01115 0.82 -1.0 256,971 + DDA3937_RS01115 0.84 +1.0 256,972 - DDA3937_RS01115 0.85 -1.7
Or see this region's nucleotide sequence