Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00925

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00915 and DDA3937_RS00920 are separated by 9 nucleotidesDDA3937_RS00920 and DDA3937_RS00925 are separated by 85 nucleotidesDDA3937_RS00925 and DDA3937_RS00930 are separated by 51 nucleotides DDA3937_RS00915: DDA3937_RS00915 - HslU--HslV peptidase ATPase subunit, at 209,945 to 211,276 _RS00915 DDA3937_RS00920: DDA3937_RS00920 - ATP-dependent protease subunit HslV, at 211,286 to 211,816 _RS00920 DDA3937_RS00925: DDA3937_RS00925 - cell division protein FtsN, at 211,902 to 212,831 _RS00925 DDA3937_RS00930: DDA3937_RS00930 - DNA-binding transcriptional regulator CytR, at 212,883 to 213,953 _RS00930 Position (kb) 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 211.006 kb on - strand, within DDA3937_RS00915at 211.228 kb on + strandat 211.229 kb on - strandat 211.229 kb on - strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.230 kb on + strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.231 kb on - strandat 211.234 kb on + strandat 211.234 kb on + strandat 211.234 kb on + strandat 211.234 kb on + strandat 211.235 kb on - strandat 211.235 kb on - strandat 211.235 kb on - strandat 211.235 kb on - strandat 211.250 kb on + strandat 211.250 kb on + strandat 211.276 kb on + strandat 211.276 kb on + strandat 211.276 kb on + strandat 211.277 kb on - strandat 211.277 kb on - strandat 211.287 kb on + strandat 211.288 kb on - strandat 211.302 kb on - strandat 211.332 kb on + strandat 211.332 kb on + strandat 211.332 kb on + strandat 211.333 kb on - strandat 211.333 kb on - strandat 211.343 kb on - strand, within DDA3937_RS00920at 211.343 kb on - strand, within DDA3937_RS00920at 211.388 kb on + strand, within DDA3937_RS00920at 211.701 kb on + strand, within DDA3937_RS00920at 211.701 kb on + strand, within DDA3937_RS00920at 211.702 kb on - strand, within DDA3937_RS00920at 211.736 kb on + strand, within DDA3937_RS00920at 211.797 kb on - strandat 211.803 kb on - strandat 211.803 kb on - strandat 211.867 kb on - strandat 211.876 kb on - strandat 211.991 kb on - strandat 212.226 kb on + strand, within DDA3937_RS00925at 212.273 kb on + strand, within DDA3937_RS00925at 212.274 kb on - strand, within DDA3937_RS00925at 212.274 kb on - strand, within DDA3937_RS00925at 212.333 kb on + strand, within DDA3937_RS00925at 212.387 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.496 kb on - strand, within DDA3937_RS00925at 212.496 kb on - strand, within DDA3937_RS00925at 212.816 kb on - strandat 212.816 kb on - strandat 212.816 kb on - strandat 212.816 kb on - strandat 212.858 kb on + strandat 212.858 kb on + strandat 212.859 kb on - strandat 212.885 kb on - strandat 212.957 kb on + strandat 212.957 kb on + strandat 213.027 kb on + strand, within DDA3937_RS00930at 213.027 kb on + strand, within DDA3937_RS00930at 213.027 kb on + strand, within DDA3937_RS00930at 213.027 kb on + strand, within DDA3937_RS00930at 213.028 kb on - strand, within DDA3937_RS00930at 213.028 kb on - strand, within DDA3937_RS00930at 213.028 kb on - strandat 213.028 kb on - strand, within DDA3937_RS00930at 213.028 kb on - strand, within DDA3937_RS00930at 213.052 kb on + strand, within DDA3937_RS00930at 213.269 kb on - strand, within DDA3937_RS00930at 213.292 kb on + strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.335 kb on + strand, within DDA3937_RS00930at 213.335 kb on + strand, within DDA3937_RS00930at 213.335 kb on + strand, within DDA3937_RS00930at 213.336 kb on - strand, within DDA3937_RS00930at 213.336 kb on - strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.338 kb on - strand, within DDA3937_RS00930at 213.338 kb on - strand, within DDA3937_RS00930at 213.338 kb on - strand, within DDA3937_RS00930at 213.421 kb on + strand, within DDA3937_RS00930at 213.422 kb on - strand, within DDA3937_RS00930at 213.422 kb on - strand, within DDA3937_RS00930at 213.454 kb on + strand, within DDA3937_RS00930at 213.473 kb on + strand, within DDA3937_RS00930at 213.725 kb on + strand, within DDA3937_RS00930at 213.796 kb on + strand, within DDA3937_RS00930at 213.796 kb on + strand, within DDA3937_RS00930at 213.796 kb on + strand, within DDA3937_RS00930at 213.797 kb on - strand, within DDA3937_RS00930

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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211,006 - DDA3937_RS00915 0.80 -1.5
211,228 + -0.4
211,229 - -0.0
211,229 - -0.2
211,230 + -1.7
211,230 + +1.3
211,230 + -0.4
211,230 + -1.8
211,230 + -3.0
211,230 + -1.7
211,230 + +1.1
211,230 + -1.0
211,230 + +2.6
211,230 + -0.7
211,230 + +0.0
211,230 + -1.1
211,230 + -3.7
211,230 + -2.6
211,230 + -2.6
211,230 + -1.2
211,231 - -0.3
211,231 - -1.4
211,231 - +1.4
211,231 - -1.8
211,231 - -1.2
211,231 - -0.6
211,231 - -0.8
211,231 - +3.3
211,231 - -0.7
211,231 - -1.6
211,231 - -0.1
211,231 - -0.4
211,231 - +0.5
211,234 + -1.2
211,234 + -1.8
211,234 + +0.9
211,234 + +0.2
211,235 - -2.4
211,235 - +1.6
211,235 - +1.4
211,235 - -1.2
211,250 + -0.7
211,250 + +0.3
211,276 + -2.0
211,276 + +1.6
211,276 + +2.1
211,277 - -2.6
211,277 - +1.4
211,287 + -2.0
211,288 - -1.6
211,302 - +0.9
211,332 + -1.5
211,332 + -2.2
211,332 + -0.3
211,333 - -0.6
211,333 - -0.3
211,343 - DDA3937_RS00920 0.11 -2.7
211,343 - DDA3937_RS00920 0.11 -1.6
211,388 + DDA3937_RS00920 0.19 -0.3
211,701 + DDA3937_RS00920 0.78 -0.7
211,701 + DDA3937_RS00920 0.78 -1.8
211,702 - DDA3937_RS00920 0.78 +2.5
211,736 + DDA3937_RS00920 0.85 -0.7
211,797 - +0.8
211,803 - -1.0
211,803 - +0.3
211,867 - -0.9
211,876 - -0.1
211,991 - -4.2
212,226 + DDA3937_RS00925 0.35 -1.7
212,273 + DDA3937_RS00925 0.40 -0.7
212,274 - DDA3937_RS00925 0.40 +0.3
212,274 - DDA3937_RS00925 0.40 -1.2
212,333 + DDA3937_RS00925 0.46 -2.5
212,387 + DDA3937_RS00925 0.52 -2.0
212,416 + DDA3937_RS00925 0.55 +0.5
212,416 + DDA3937_RS00925 0.55 -1.5
212,416 + DDA3937_RS00925 0.55 -2.2
212,416 + DDA3937_RS00925 0.55 -1.5
212,417 - DDA3937_RS00925 0.55 +0.6
212,417 - DDA3937_RS00925 0.55 -0.7
212,417 - DDA3937_RS00925 0.55 -1.6
212,417 - DDA3937_RS00925 0.55 +0.4
212,417 - DDA3937_RS00925 0.55 +0.6
212,496 - DDA3937_RS00925 0.64 -1.4
212,496 - DDA3937_RS00925 0.64 -2.3
212,816 - -2.1
212,816 - +1.6
212,816 - -0.0
212,816 - +0.0
212,858 + -1.3
212,858 + -1.7
212,859 - +0.9
212,885 - -1.9
212,957 + -2.1
212,957 + -0.0
213,027 + DDA3937_RS00930 0.13 +0.9
213,027 + DDA3937_RS00930 0.13 -2.6
213,027 + DDA3937_RS00930 0.13 -1.6
213,027 + DDA3937_RS00930 0.13 -0.3
213,028 - DDA3937_RS00930 0.14 -2.1
213,028 - DDA3937_RS00930 0.14 -3.3
213,028 - +0.6
213,028 - DDA3937_RS00930 0.14 -0.2
213,028 - DDA3937_RS00930 0.14 -1.7
213,052 + DDA3937_RS00930 0.16 +2.2
213,269 - DDA3937_RS00930 0.36 +1.2
213,292 + DDA3937_RS00930 0.38 +1.1
213,293 - DDA3937_RS00930 0.38 +0.3
213,293 - DDA3937_RS00930 0.38 -0.6
213,293 - DDA3937_RS00930 0.38 -1.7
213,293 - DDA3937_RS00930 0.38 +1.8
213,293 - DDA3937_RS00930 0.38 -2.7
213,335 + DDA3937_RS00930 0.42 -0.3
213,335 + DDA3937_RS00930 0.42 +1.9
213,335 + DDA3937_RS00930 0.42 -0.6
213,336 - DDA3937_RS00930 0.42 +1.0
213,336 - DDA3937_RS00930 0.42 +0.1
213,337 + DDA3937_RS00930 0.42 -0.2
213,337 + DDA3937_RS00930 0.42 -2.0
213,337 + DDA3937_RS00930 0.42 -1.6
213,337 + DDA3937_RS00930 0.42 +0.2
213,338 - DDA3937_RS00930 0.42 -0.0
213,338 - DDA3937_RS00930 0.42 -0.6
213,338 - DDA3937_RS00930 0.42 -2.5
213,421 + DDA3937_RS00930 0.50 -0.3
213,422 - DDA3937_RS00930 0.50 -0.4
213,422 - DDA3937_RS00930 0.50 -0.1
213,454 + DDA3937_RS00930 0.53 -0.6
213,473 + DDA3937_RS00930 0.55 +1.6
213,725 + DDA3937_RS00930 0.79 -1.4
213,796 + DDA3937_RS00930 0.85 +0.6
213,796 + DDA3937_RS00930 0.85 -0.3
213,796 + DDA3937_RS00930 0.85 -1.1
213,797 - DDA3937_RS00930 0.85 +0.0

Or see this region's nucleotide sequence