Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00855

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00850 and DDA3937_RS00855 are separated by 3 nucleotidesDDA3937_RS00855 and DDA3937_RS00860 are separated by 94 nucleotides DDA3937_RS00850: DDA3937_RS00850 - N-carbamoylputrescine amidase, at 197,176 to 198,060 _RS00850 DDA3937_RS00855: DDA3937_RS00855 - agmatine deiminase, at 198,064 to 199,164 _RS00855 DDA3937_RS00860: DDA3937_RS00860 - alkaline phosphatase, at 199,259 to 200,698 _RS00860 Position (kb) 198 199 200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 197.113 kb on + strandat 197.113 kb on + strandat 197.114 kb on - strandat 197.116 kb on + strandat 197.117 kb on - strandat 197.152 kb on + strandat 197.153 kb on - strandat 197.153 kb on - strandat 197.320 kb on + strand, within DDA3937_RS00850at 197.320 kb on + strand, within DDA3937_RS00850at 197.320 kb on + strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.350 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.465 kb on - strand, within DDA3937_RS00850at 197.467 kb on + strand, within DDA3937_RS00850at 197.467 kb on + strand, within DDA3937_RS00850at 197.468 kb on - strand, within DDA3937_RS00850at 197.516 kb on - strand, within DDA3937_RS00850at 197.618 kb on + strand, within DDA3937_RS00850at 197.619 kb on - strand, within DDA3937_RS00850at 197.766 kb on - strand, within DDA3937_RS00850at 197.839 kb on + strand, within DDA3937_RS00850at 197.840 kb on - strand, within DDA3937_RS00850at 197.840 kb on - strandat 197.840 kb on - strand, within DDA3937_RS00850at 197.866 kb on + strand, within DDA3937_RS00850at 197.866 kb on + strand, within DDA3937_RS00850at 197.867 kb on - strand, within DDA3937_RS00850at 197.867 kb on - strand, within DDA3937_RS00850at 198.019 kb on + strandat 198.019 kb on + strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.020 kb on - strandat 198.027 kb on - strandat 198.058 kb on + strandat 198.058 kb on + strandat 198.058 kb on + strandat 198.058 kb on + strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.059 kb on - strandat 198.257 kb on + strand, within DDA3937_RS00855at 198.395 kb on + strand, within DDA3937_RS00855at 198.439 kb on + strand, within DDA3937_RS00855at 198.439 kb on + strand, within DDA3937_RS00855at 198.440 kb on - strand, within DDA3937_RS00855at 198.440 kb on - strand, within DDA3937_RS00855at 198.506 kb on - strand, within DDA3937_RS00855at 198.506 kb on - strand, within DDA3937_RS00855at 198.646 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.688 kb on + strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.689 kb on - strand, within DDA3937_RS00855at 198.691 kb on - strand, within DDA3937_RS00855at 198.787 kb on + strand, within DDA3937_RS00855at 198.788 kb on - strand, within DDA3937_RS00855at 198.808 kb on + strand, within DDA3937_RS00855at 198.809 kb on - strand, within DDA3937_RS00855at 198.886 kb on + strand, within DDA3937_RS00855at 198.887 kb on - strand, within DDA3937_RS00855at 198.887 kb on - strand, within DDA3937_RS00855at 198.887 kb on - strand, within DDA3937_RS00855at 198.940 kb on - strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.967 kb on + strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 198.968 kb on - strand, within DDA3937_RS00855at 199.003 kb on + strand, within DDA3937_RS00855at 199.003 kb on + strand, within DDA3937_RS00855at 199.004 kb on - strand, within DDA3937_RS00855at 199.004 kb on - strand, within DDA3937_RS00855at 199.069 kb on + strandat 199.069 kb on + strandat 199.162 kb on + strandat 199.163 kb on - strandat 199.163 kb on - strandat 199.260 kb on + strandat 199.260 kb on + strandat 199.290 kb on + strandat 199.291 kb on - strandat 199.291 kb on - strandat 199.291 kb on - strandat 199.291 kb on - strandat 199.405 kb on - strand, within DDA3937_RS00860at 199.721 kb on + strand, within DDA3937_RS00860at 199.785 kb on + strand, within DDA3937_RS00860at 199.786 kb on - strand, within DDA3937_RS00860at 199.950 kb on + strand, within DDA3937_RS00860

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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197,113 + -2.7
197,113 + -1.4
197,114 - -1.9
197,116 + -2.2
197,117 - -1.6
197,152 + -3.2
197,153 - -0.7
197,153 - -0.6
197,320 + DDA3937_RS00850 0.16 -2.0
197,320 + DDA3937_RS00850 0.16 -0.2
197,320 + DDA3937_RS00850 0.16 -2.5
197,321 - DDA3937_RS00850 0.16 -0.6
197,321 - DDA3937_RS00850 0.16 -4.0
197,321 - DDA3937_RS00850 0.16 -0.8
197,350 + DDA3937_RS00850 0.20 +1.1
197,464 + DDA3937_RS00850 0.33 +0.3
197,464 + DDA3937_RS00850 0.33 -2.1
197,464 + DDA3937_RS00850 0.33 +0.6
197,465 - DDA3937_RS00850 0.33 -2.0
197,467 + DDA3937_RS00850 0.33 -0.2
197,467 + DDA3937_RS00850 0.33 +0.7
197,468 - DDA3937_RS00850 0.33 +0.6
197,516 - DDA3937_RS00850 0.38 -0.3
197,618 + DDA3937_RS00850 0.50 +1.3
197,619 - DDA3937_RS00850 0.50 -2.4
197,766 - DDA3937_RS00850 0.67 -1.8
197,839 + DDA3937_RS00850 0.75 +0.4
197,840 - DDA3937_RS00850 0.75 +0.5
197,840 - +1.6
197,840 - DDA3937_RS00850 0.75 -2.3
197,866 + DDA3937_RS00850 0.78 -1.3
197,866 + DDA3937_RS00850 0.78 +0.6
197,867 - DDA3937_RS00850 0.78 -1.6
197,867 - DDA3937_RS00850 0.78 +0.2
198,019 + -0.1
198,019 + +0.0
198,020 - -2.4
198,020 - -0.7
198,020 - +1.4
198,020 - -1.0
198,020 - -0.7
198,020 - -1.1
198,027 - +0.4
198,058 + -2.4
198,058 + -1.0
198,058 + +0.0
198,058 + -1.6
198,059 - -3.0
198,059 - -0.2
198,059 - +0.8
198,059 - -0.7
198,059 - +0.7
198,059 - -0.2
198,257 + DDA3937_RS00855 0.18 -0.7
198,395 + DDA3937_RS00855 0.30 -1.2
198,439 + DDA3937_RS00855 0.34 -1.4
198,439 + DDA3937_RS00855 0.34 -0.7
198,440 - DDA3937_RS00855 0.34 -2.7
198,440 - DDA3937_RS00855 0.34 -0.6
198,506 - DDA3937_RS00855 0.40 +0.0
198,506 - DDA3937_RS00855 0.40 -2.1
198,646 + DDA3937_RS00855 0.53 +1.2
198,688 + DDA3937_RS00855 0.57 -1.2
198,688 + DDA3937_RS00855 0.57 -2.0
198,688 + DDA3937_RS00855 0.57 -2.0
198,688 + DDA3937_RS00855 0.57 -1.2
198,689 - DDA3937_RS00855 0.57 -2.6
198,689 - DDA3937_RS00855 0.57 +2.6
198,689 - DDA3937_RS00855 0.57 -3.2
198,689 - DDA3937_RS00855 0.57 -2.6
198,689 - DDA3937_RS00855 0.57 -0.1
198,689 - DDA3937_RS00855 0.57 +0.0
198,691 - DDA3937_RS00855 0.57 -1.1
198,787 + DDA3937_RS00855 0.66 -0.4
198,788 - DDA3937_RS00855 0.66 +0.6
198,808 + DDA3937_RS00855 0.68 -1.6
198,809 - DDA3937_RS00855 0.68 +0.4
198,886 + DDA3937_RS00855 0.75 -2.6
198,887 - DDA3937_RS00855 0.75 -0.9
198,887 - DDA3937_RS00855 0.75 -3.3
198,887 - DDA3937_RS00855 0.75 -0.8
198,940 - DDA3937_RS00855 0.80 -0.9
198,967 + DDA3937_RS00855 0.82 -0.2
198,967 + DDA3937_RS00855 0.82 -0.1
198,967 + DDA3937_RS00855 0.82 -1.8
198,967 + DDA3937_RS00855 0.82 +0.3
198,967 + DDA3937_RS00855 0.82 -3.1
198,967 + DDA3937_RS00855 0.82 -0.9
198,967 + DDA3937_RS00855 0.82 -3.5
198,968 - DDA3937_RS00855 0.82 -3.6
198,968 - DDA3937_RS00855 0.82 -0.1
198,968 - DDA3937_RS00855 0.82 -1.6
198,968 - DDA3937_RS00855 0.82 +1.1
198,968 - DDA3937_RS00855 0.82 -1.7
198,968 - DDA3937_RS00855 0.82 +0.7
198,968 - DDA3937_RS00855 0.82 -2.4
199,003 + DDA3937_RS00855 0.85 -1.0
199,003 + DDA3937_RS00855 0.85 -0.5
199,004 - DDA3937_RS00855 0.85 -0.2
199,004 - DDA3937_RS00855 0.85 -1.0
199,069 + +1.3
199,069 + -0.8
199,162 + -0.1
199,163 - -0.8
199,163 - -0.7
199,260 + -0.9
199,260 + -2.1
199,290 + +1.1
199,291 - -1.6
199,291 - -0.6
199,291 - +1.6
199,291 - -2.4
199,405 - DDA3937_RS00860 0.10 +0.0
199,721 + DDA3937_RS00860 0.32 -1.0
199,785 + DDA3937_RS00860 0.37 +0.6
199,786 - DDA3937_RS00860 0.37 -0.7
199,950 + DDA3937_RS00860 0.48 +2.0

Or see this region's nucleotide sequence