Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00845

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00840 and DDA3937_RS00845 are separated by 246 nucleotidesDDA3937_RS00845 and DDA3937_RS00850 are separated by 335 nucleotides DDA3937_RS00840: DDA3937_RS00840 - CDF family cation-efflux transporter FieF, at 194,729 to 195,631 _RS00840 DDA3937_RS00845: DDA3937_RS00845 - 6-phosphofructokinase, at 195,878 to 196,840 _RS00845 DDA3937_RS00850: DDA3937_RS00850 - N-carbamoylputrescine amidase, at 197,176 to 198,060 _RS00850 Position (kb) 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 194.912 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.941 kb on + strand, within DDA3937_RS00840at 194.942 kb on - strand, within DDA3937_RS00840at 194.942 kb on - strandat 194.942 kb on - strand, within DDA3937_RS00840at 194.942 kb on - strand, within DDA3937_RS00840at 194.942 kb on - strand, within DDA3937_RS00840at 195.088 kb on + strand, within DDA3937_RS00840at 195.088 kb on + strand, within DDA3937_RS00840at 195.148 kb on + strand, within DDA3937_RS00840at 195.157 kb on + strand, within DDA3937_RS00840at 195.157 kb on + strand, within DDA3937_RS00840at 195.158 kb on - strand, within DDA3937_RS00840at 195.158 kb on - strand, within DDA3937_RS00840at 195.189 kb on - strand, within DDA3937_RS00840at 195.253 kb on + strand, within DDA3937_RS00840at 195.253 kb on + strand, within DDA3937_RS00840at 195.253 kb on + strand, within DDA3937_RS00840at 195.254 kb on - strand, within DDA3937_RS00840at 195.254 kb on - strand, within DDA3937_RS00840at 195.295 kb on + strand, within DDA3937_RS00840at 195.295 kb on + strand, within DDA3937_RS00840at 195.296 kb on - strand, within DDA3937_RS00840at 195.300 kb on + strand, within DDA3937_RS00840at 195.300 kb on + strand, within DDA3937_RS00840at 195.324 kb on - strand, within DDA3937_RS00840at 195.324 kb on - strand, within DDA3937_RS00840at 195.388 kb on + strand, within DDA3937_RS00840at 195.388 kb on + strand, within DDA3937_RS00840at 195.389 kb on - strandat 195.411 kb on + strandat 195.411 kb on + strand, within DDA3937_RS00840at 195.569 kb on - strandat 195.569 kb on - strandat 195.629 kb on + strandat 195.629 kb on + strandat 195.629 kb on + strandat 195.630 kb on - strandat 195.630 kb on - strandat 195.630 kb on - strandat 195.732 kb on + strandat 195.782 kb on - strandat 195.788 kb on + strandat 195.789 kb on - strandat 195.793 kb on + strandat 195.793 kb on + strandat 195.793 kb on + strandat 195.793 kb on + strandat 195.793 kb on + strandat 195.794 kb on - strandat 195.810 kb on - strandat 195.836 kb on - strandat 195.992 kb on + strandat 195.992 kb on + strand, within DDA3937_RS00845at 196.196 kb on + strand, within DDA3937_RS00845at 196.196 kb on + strand, within DDA3937_RS00845at 196.197 kb on - strand, within DDA3937_RS00845at 196.578 kb on - strandat 196.766 kb on - strandat 196.901 kb on + strandat 196.901 kb on + strandat 196.902 kb on - strandat 197.022 kb on + strandat 197.113 kb on + strandat 197.113 kb on + strandat 197.114 kb on - strandat 197.116 kb on + strandat 197.117 kb on - strandat 197.152 kb on + strandat 197.153 kb on - strandat 197.153 kb on - strandat 197.320 kb on + strand, within DDA3937_RS00850at 197.320 kb on + strand, within DDA3937_RS00850at 197.320 kb on + strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.321 kb on - strand, within DDA3937_RS00850at 197.350 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.464 kb on + strand, within DDA3937_RS00850at 197.465 kb on - strand, within DDA3937_RS00850at 197.467 kb on + strand, within DDA3937_RS00850at 197.467 kb on + strand, within DDA3937_RS00850at 197.468 kb on - strand, within DDA3937_RS00850at 197.516 kb on - strand, within DDA3937_RS00850at 197.618 kb on + strand, within DDA3937_RS00850at 197.619 kb on - strand, within DDA3937_RS00850at 197.766 kb on - strand, within DDA3937_RS00850at 197.839 kb on + strand, within DDA3937_RS00850at 197.840 kb on - strand, within DDA3937_RS00850at 197.840 kb on - strandat 197.840 kb on - strand, within DDA3937_RS00850

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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194,912 + DDA3937_RS00840 0.20 -0.2
194,941 + DDA3937_RS00840 0.23 +0.8
194,941 + DDA3937_RS00840 0.23 +0.4
194,941 + DDA3937_RS00840 0.23 -3.4
194,941 + DDA3937_RS00840 0.23 -0.5
194,941 + DDA3937_RS00840 0.23 -1.0
194,941 + DDA3937_RS00840 0.23 -0.2
194,941 + DDA3937_RS00840 0.23 -1.0
194,941 + DDA3937_RS00840 0.23 -0.5
194,941 + DDA3937_RS00840 0.23 -1.6
194,942 - DDA3937_RS00840 0.24 -0.7
194,942 - +0.0
194,942 - DDA3937_RS00840 0.24 -0.7
194,942 - DDA3937_RS00840 0.24 -0.4
194,942 - DDA3937_RS00840 0.24 -0.8
195,088 + DDA3937_RS00840 0.40 +0.9
195,088 + DDA3937_RS00840 0.40 +0.3
195,148 + DDA3937_RS00840 0.46 -0.2
195,157 + DDA3937_RS00840 0.47 -1.3
195,157 + DDA3937_RS00840 0.47 +1.1
195,158 - DDA3937_RS00840 0.48 +2.5
195,158 - DDA3937_RS00840 0.48 -2.5
195,189 - DDA3937_RS00840 0.51 +0.0
195,253 + DDA3937_RS00840 0.58 +0.8
195,253 + DDA3937_RS00840 0.58 +1.1
195,253 + DDA3937_RS00840 0.58 -1.7
195,254 - DDA3937_RS00840 0.58 +1.9
195,254 - DDA3937_RS00840 0.58 +2.2
195,295 + DDA3937_RS00840 0.63 -0.2
195,295 + DDA3937_RS00840 0.63 -0.3
195,296 - DDA3937_RS00840 0.63 -1.0
195,300 + DDA3937_RS00840 0.63 +1.1
195,300 + DDA3937_RS00840 0.63 -3.3
195,324 - DDA3937_RS00840 0.66 +0.8
195,324 - DDA3937_RS00840 0.66 -2.1
195,388 + DDA3937_RS00840 0.73 -2.2
195,388 + DDA3937_RS00840 0.73 +2.0
195,389 - +0.0
195,411 + +0.0
195,411 + DDA3937_RS00840 0.76 -2.6
195,569 - -1.1
195,569 - -2.5
195,629 + +0.0
195,629 + +1.2
195,629 + +0.5
195,630 - +3.0
195,630 - -1.0
195,630 - +1.2
195,732 + -0.7
195,782 - -2.6
195,788 + -1.0
195,789 - -1.6
195,793 + +0.2
195,793 + -0.4
195,793 + -0.6
195,793 + -0.7
195,793 + -2.3
195,794 - -0.7
195,810 - -1.6
195,836 - -0.4
195,992 + -0.7
195,992 + DDA3937_RS00845 0.12 -1.2
196,196 + DDA3937_RS00845 0.33 -1.6
196,196 + DDA3937_RS00845 0.33 -1.6
196,197 - DDA3937_RS00845 0.33 -1.7
196,578 - -1.0
196,766 - +0.0
196,901 + +0.1
196,901 + -2.2
196,902 - -1.6
197,022 + -2.6
197,113 + -2.7
197,113 + -1.4
197,114 - -1.9
197,116 + -2.2
197,117 - -1.6
197,152 + -3.2
197,153 - -0.7
197,153 - -0.6
197,320 + DDA3937_RS00850 0.16 -2.0
197,320 + DDA3937_RS00850 0.16 -0.2
197,320 + DDA3937_RS00850 0.16 -2.5
197,321 - DDA3937_RS00850 0.16 -0.6
197,321 - DDA3937_RS00850 0.16 -4.0
197,321 - DDA3937_RS00850 0.16 -0.8
197,350 + DDA3937_RS00850 0.20 +1.1
197,464 + DDA3937_RS00850 0.33 +0.3
197,464 + DDA3937_RS00850 0.33 -2.1
197,464 + DDA3937_RS00850 0.33 +0.6
197,465 - DDA3937_RS00850 0.33 -2.0
197,467 + DDA3937_RS00850 0.33 -0.2
197,467 + DDA3937_RS00850 0.33 +0.7
197,468 - DDA3937_RS00850 0.33 +0.6
197,516 - DDA3937_RS00850 0.38 -0.3
197,618 + DDA3937_RS00850 0.50 +1.3
197,619 - DDA3937_RS00850 0.50 -2.4
197,766 - DDA3937_RS00850 0.67 -1.8
197,839 + DDA3937_RS00850 0.75 +0.4
197,840 - DDA3937_RS00850 0.75 +0.5
197,840 - +1.6
197,840 - DDA3937_RS00850 0.75 -2.3

Or see this region's nucleotide sequence