Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00730

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00725 and DDA3937_RS00730 are separated by 41 nucleotidesDDA3937_RS00730 and DDA3937_RS00735 are separated by 6 nucleotides DDA3937_RS00725: DDA3937_RS00725 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 172,528 to 173,415 _RS00725 DDA3937_RS00730: DDA3937_RS00730 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 173,457 to 174,305 _RS00730 DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388 _RS00735 Position (kb) 173 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 172.570 kb on + strandat 172.571 kb on - strandat 172.658 kb on + strand, within DDA3937_RS00725at 172.658 kb on + strand, within DDA3937_RS00725at 172.658 kb on + strand, within DDA3937_RS00725at 172.658 kb on + strand, within DDA3937_RS00725at 172.658 kb on + strand, within DDA3937_RS00725at 172.659 kb on - strand, within DDA3937_RS00725at 172.659 kb on - strand, within DDA3937_RS00725at 172.659 kb on - strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strandat 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.726 kb on + strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.727 kb on - strand, within DDA3937_RS00725at 172.729 kb on + strand, within DDA3937_RS00725at 172.729 kb on + strand, within DDA3937_RS00725at 172.730 kb on - strand, within DDA3937_RS00725at 172.744 kb on + strand, within DDA3937_RS00725at 172.744 kb on + strand, within DDA3937_RS00725at 172.745 kb on - strand, within DDA3937_RS00725at 172.822 kb on + strand, within DDA3937_RS00725at 172.822 kb on + strand, within DDA3937_RS00725at 172.823 kb on - strand, within DDA3937_RS00725at 172.870 kb on + strand, within DDA3937_RS00725at 173.041 kb on + strand, within DDA3937_RS00725at 173.041 kb on + strand, within DDA3937_RS00725at 173.076 kb on + strand, within DDA3937_RS00725at 173.077 kb on - strand, within DDA3937_RS00725at 173.077 kb on - strand, within DDA3937_RS00725at 173.200 kb on + strand, within DDA3937_RS00725at 173.201 kb on - strand, within DDA3937_RS00725at 173.201 kb on - strand, within DDA3937_RS00725at 173.201 kb on - strand, within DDA3937_RS00725at 173.268 kb on + strand, within DDA3937_RS00725at 173.268 kb on + strand, within DDA3937_RS00725at 173.269 kb on - strand, within DDA3937_RS00725at 173.274 kb on + strand, within DDA3937_RS00725at 173.274 kb on + strand, within DDA3937_RS00725at 173.275 kb on - strand, within DDA3937_RS00725at 173.275 kb on - strand, within DDA3937_RS00725at 173.275 kb on - strand, within DDA3937_RS00725at 173.275 kb on - strand, within DDA3937_RS00725at 173.278 kb on + strand, within DDA3937_RS00725at 173.279 kb on - strand, within DDA3937_RS00725at 173.288 kb on - strand, within DDA3937_RS00725at 173.288 kb on - strand, within DDA3937_RS00725at 173.373 kb on - strandat 173.397 kb on + strandat 173.397 kb on + strandat 173.398 kb on - strandat 173.398 kb on - strandat 173.398 kb on - strandat 173.407 kb on + strandat 173.407 kb on + strandat 173.407 kb on + strandat 173.407 kb on + strandat 173.407 kb on + strandat 173.408 kb on - strandat 173.408 kb on - strandat 173.417 kb on + strandat 173.417 kb on + strandat 173.418 kb on - strandat 173.418 kb on - strandat 173.418 kb on - strandat 173.483 kb on + strandat 173.483 kb on + strandat 173.483 kb on + strandat 173.483 kb on + strandat 173.484 kb on - strandat 173.485 kb on + strandat 173.486 kb on - strandat 173.486 kb on - strandat 173.486 kb on - strandat 173.538 kb on + strandat 173.538 kb on + strandat 173.538 kb on + strandat 173.538 kb on + strandat 173.538 kb on + strandat 173.539 kb on - strandat 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.634 kb on + strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.635 kb on - strand, within DDA3937_RS00730at 173.653 kb on + strand, within DDA3937_RS00730at 173.769 kb on + strand, within DDA3937_RS00730at 173.770 kb on - strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strandat 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.892 kb on + strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.893 kb on - strand, within DDA3937_RS00730at 173.933 kb on + strand, within DDA3937_RS00730at 173.933 kb on + strand, within DDA3937_RS00730at 174.083 kb on + strand, within DDA3937_RS00730at 174.084 kb on - strand, within DDA3937_RS00730at 174.084 kb on - strand, within DDA3937_RS00730at 174.087 kb on + strand, within DDA3937_RS00730at 174.087 kb on + strand, within DDA3937_RS00730at 174.088 kb on - strand, within DDA3937_RS00730at 174.088 kb on - strand, within DDA3937_RS00730at 174.088 kb on - strand, within DDA3937_RS00730at 174.102 kb on + strand, within DDA3937_RS00730at 174.102 kb on + strand, within DDA3937_RS00730at 174.102 kb on + strand, within DDA3937_RS00730at 174.103 kb on - strand, within DDA3937_RS00730at 174.103 kb on - strand, within DDA3937_RS00730at 174.294 kb on - strandat 174.294 kb on - strandat 174.303 kb on + strandat 174.311 kb on + strandat 174.312 kb on - strandat 174.312 kb on - strandat 174.312 kb on - strandat 174.323 kb on - strandat 174.348 kb on + strandat 174.348 kb on + strandat 174.349 kb on - strandat 174.443 kb on + strand, within DDA3937_RS00735at 174.443 kb on + strand, within DDA3937_RS00735at 174.443 kb on + strand, within DDA3937_RS00735at 174.444 kb on - strand, within DDA3937_RS00735at 174.444 kb on - strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strandat 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.495 kb on + strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.496 kb on - strand, within DDA3937_RS00735at 174.565 kb on - strand, within DDA3937_RS00735at 174.565 kb on - strand, within DDA3937_RS00735at 174.592 kb on - strand, within DDA3937_RS00735at 174.606 kb on + strand, within DDA3937_RS00735at 174.879 kb on + strand, within DDA3937_RS00735at 174.879 kb on + strand, within DDA3937_RS00735at 174.880 kb on - strand, within DDA3937_RS00735at 174.978 kb on + strand, within DDA3937_RS00735at 174.979 kb on - strand, within DDA3937_RS00735

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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172,570 + -1.6
172,571 - -0.8
172,658 + DDA3937_RS00725 0.15 -3.2
172,658 + DDA3937_RS00725 0.15 -1.8
172,658 + DDA3937_RS00725 0.15 +0.7
172,658 + DDA3937_RS00725 0.15 +1.0
172,658 + DDA3937_RS00725 0.15 -1.7
172,659 - DDA3937_RS00725 0.15 +0.2
172,659 - DDA3937_RS00725 0.15 +1.6
172,659 - DDA3937_RS00725 0.15 -3.2
172,726 + DDA3937_RS00725 0.22 -1.0
172,726 + DDA3937_RS00725 0.22 -0.4
172,726 + DDA3937_RS00725 0.22 -3.4
172,726 + DDA3937_RS00725 0.22 -1.7
172,726 + DDA3937_RS00725 0.22 +1.3
172,726 + DDA3937_RS00725 0.22 -1.6
172,726 + DDA3937_RS00725 0.22 +1.6
172,726 + DDA3937_RS00725 0.22 -0.5
172,726 + DDA3937_RS00725 0.22 +2.5
172,726 + +1.6
172,726 + DDA3937_RS00725 0.22 +0.2
172,726 + DDA3937_RS00725 0.22 -2.6
172,726 + DDA3937_RS00725 0.22 -1.4
172,727 - DDA3937_RS00725 0.22 +0.7
172,727 - DDA3937_RS00725 0.22 +0.0
172,727 - DDA3937_RS00725 0.22 -1.7
172,727 - DDA3937_RS00725 0.22 +1.9
172,727 - DDA3937_RS00725 0.22 -0.5
172,727 - DDA3937_RS00725 0.22 -1.2
172,727 - DDA3937_RS00725 0.22 +1.5
172,727 - DDA3937_RS00725 0.22 -1.6
172,729 + DDA3937_RS00725 0.23 +0.0
172,729 + DDA3937_RS00725 0.23 -0.4
172,730 - DDA3937_RS00725 0.23 +1.4
172,744 + DDA3937_RS00725 0.24 -0.5
172,744 + DDA3937_RS00725 0.24 -2.4
172,745 - DDA3937_RS00725 0.24 -0.4
172,822 + DDA3937_RS00725 0.33 -0.9
172,822 + DDA3937_RS00725 0.33 -0.8
172,823 - DDA3937_RS00725 0.33 -1.2
172,870 + DDA3937_RS00725 0.39 +1.3
173,041 + DDA3937_RS00725 0.58 -1.7
173,041 + DDA3937_RS00725 0.58 -1.0
173,076 + DDA3937_RS00725 0.62 +1.6
173,077 - DDA3937_RS00725 0.62 -2.2
173,077 - DDA3937_RS00725 0.62 -0.7
173,200 + DDA3937_RS00725 0.76 -0.5
173,201 - DDA3937_RS00725 0.76 -1.1
173,201 - DDA3937_RS00725 0.76 +1.1
173,201 - DDA3937_RS00725 0.76 -0.2
173,268 + DDA3937_RS00725 0.83 -0.1
173,268 + DDA3937_RS00725 0.83 -1.6
173,269 - DDA3937_RS00725 0.83 +0.5
173,274 + DDA3937_RS00725 0.84 -2.0
173,274 + DDA3937_RS00725 0.84 +0.7
173,275 - DDA3937_RS00725 0.84 +0.6
173,275 - DDA3937_RS00725 0.84 -0.5
173,275 - DDA3937_RS00725 0.84 +1.6
173,275 - DDA3937_RS00725 0.84 -0.1
173,278 + DDA3937_RS00725 0.84 -2.4
173,279 - DDA3937_RS00725 0.85 -1.8
173,288 - DDA3937_RS00725 0.86 +0.5
173,288 - DDA3937_RS00725 0.86 +0.0
173,373 - +0.5
173,397 + -0.6
173,397 + -1.0
173,398 - -0.8
173,398 - -2.9
173,398 - -1.6
173,407 + -0.8
173,407 + +2.9
173,407 + -0.6
173,407 + -1.3
173,407 + +0.0
173,408 - +0.5
173,408 - +0.7
173,417 + -1.0
173,417 + -2.2
173,418 - -0.6
173,418 - -2.3
173,418 - -2.0
173,483 + +0.8
173,483 + -1.0
173,483 + +2.6
173,483 + -0.8
173,484 - -0.8
173,485 + +0.4
173,486 - -1.0
173,486 - -0.8
173,486 - +0.6
173,538 + +0.6
173,538 + +0.1
173,538 + +0.0
173,538 + -2.6
173,538 + -1.6
173,539 - +0.9
173,634 + DDA3937_RS00730 0.21 +0.8
173,634 + DDA3937_RS00730 0.21 -0.3
173,634 + DDA3937_RS00730 0.21 +1.8
173,634 + DDA3937_RS00730 0.21 +0.6
173,634 + DDA3937_RS00730 0.21 +0.5
173,634 + DDA3937_RS00730 0.21 +0.0
173,634 + DDA3937_RS00730 0.21 -2.0
173,634 + DDA3937_RS00730 0.21 -1.7
173,634 + DDA3937_RS00730 0.21 -1.5
173,634 + DDA3937_RS00730 0.21 -1.7
173,634 + DDA3937_RS00730 0.21 +0.9
173,634 + DDA3937_RS00730 0.21 +0.7
173,634 + DDA3937_RS00730 0.21 -0.9
173,634 + DDA3937_RS00730 0.21 -0.7
173,634 + DDA3937_RS00730 0.21 -0.2
173,634 + DDA3937_RS00730 0.21 -3.2
173,634 + DDA3937_RS00730 0.21 -2.6
173,635 - DDA3937_RS00730 0.21 -0.2
173,635 - DDA3937_RS00730 0.21 -1.0
173,635 - DDA3937_RS00730 0.21 -0.2
173,635 - DDA3937_RS00730 0.21 -0.7
173,635 - DDA3937_RS00730 0.21 +0.3
173,635 - DDA3937_RS00730 0.21 -2.4
173,635 - DDA3937_RS00730 0.21 +0.2
173,635 - DDA3937_RS00730 0.21 -3.7
173,635 - DDA3937_RS00730 0.21 +0.3
173,653 + DDA3937_RS00730 0.23 -0.4
173,769 + DDA3937_RS00730 0.37 -0.2
173,770 - DDA3937_RS00730 0.37 -0.8
173,892 + DDA3937_RS00730 0.51 +0.9
173,892 + DDA3937_RS00730 0.51 -2.4
173,892 + DDA3937_RS00730 0.51 +0.8
173,892 + DDA3937_RS00730 0.51 -2.8
173,892 + +0.0
173,892 + DDA3937_RS00730 0.51 -0.4
173,892 + DDA3937_RS00730 0.51 +0.8
173,892 + DDA3937_RS00730 0.51 +0.5
173,892 + DDA3937_RS00730 0.51 -1.1
173,892 + DDA3937_RS00730 0.51 -0.3
173,892 + DDA3937_RS00730 0.51 -1.6
173,892 + DDA3937_RS00730 0.51 -3.4
173,892 + DDA3937_RS00730 0.51 -1.4
173,892 + DDA3937_RS00730 0.51 +1.4
173,892 + DDA3937_RS00730 0.51 +1.2
173,892 + DDA3937_RS00730 0.51 -1.9
173,893 - DDA3937_RS00730 0.51 -0.0
173,893 - DDA3937_RS00730 0.51 -3.0
173,893 - DDA3937_RS00730 0.51 +0.3
173,893 - DDA3937_RS00730 0.51 +1.6
173,893 - DDA3937_RS00730 0.51 +0.6
173,893 - DDA3937_RS00730 0.51 -1.0
173,893 - DDA3937_RS00730 0.51 +1.2
173,893 - DDA3937_RS00730 0.51 +0.4
173,933 + DDA3937_RS00730 0.56 +0.7
173,933 + DDA3937_RS00730 0.56 -3.4
174,083 + DDA3937_RS00730 0.74 -0.7
174,084 - DDA3937_RS00730 0.74 +1.1
174,084 - DDA3937_RS00730 0.74 +0.1
174,087 + DDA3937_RS00730 0.74 -2.6
174,087 + DDA3937_RS00730 0.74 +1.7
174,088 - DDA3937_RS00730 0.74 -0.2
174,088 - DDA3937_RS00730 0.74 +0.1
174,088 - DDA3937_RS00730 0.74 +0.1
174,102 + DDA3937_RS00730 0.76 +1.3
174,102 + DDA3937_RS00730 0.76 +0.7
174,102 + DDA3937_RS00730 0.76 +1.6
174,103 - DDA3937_RS00730 0.76 -1.2
174,103 - DDA3937_RS00730 0.76 +0.3
174,294 - -2.1
174,294 - +2.2
174,303 + -1.2
174,311 + +0.3
174,312 - -1.0
174,312 - +0.2
174,312 - +0.9
174,323 - -0.4
174,348 + -0.2
174,348 + +0.4
174,349 - +0.5
174,443 + DDA3937_RS00735 0.12 -1.8
174,443 + DDA3937_RS00735 0.12 +0.0
174,443 + DDA3937_RS00735 0.12 +2.1
174,444 - DDA3937_RS00735 0.12 -1.1
174,444 - DDA3937_RS00735 0.12 -3.1
174,495 + DDA3937_RS00735 0.17 -0.0
174,495 + +0.0
174,495 + DDA3937_RS00735 0.17 -1.3
174,495 + DDA3937_RS00735 0.17 -1.7
174,495 + DDA3937_RS00735 0.17 +2.2
174,495 + DDA3937_RS00735 0.17 -1.1
174,495 + DDA3937_RS00735 0.17 -2.2
174,495 + DDA3937_RS00735 0.17 -1.6
174,495 + DDA3937_RS00735 0.17 -1.0
174,495 + DDA3937_RS00735 0.17 -1.6
174,495 + DDA3937_RS00735 0.17 -0.7
174,495 + DDA3937_RS00735 0.17 +0.8
174,495 + DDA3937_RS00735 0.17 -1.1
174,495 + DDA3937_RS00735 0.17 -2.5
174,495 + DDA3937_RS00735 0.17 -1.4
174,495 + DDA3937_RS00735 0.17 -1.3
174,495 + DDA3937_RS00735 0.17 -0.1
174,495 + DDA3937_RS00735 0.17 -1.0
174,495 + DDA3937_RS00735 0.17 +1.6
174,495 + DDA3937_RS00735 0.17 +1.5
174,495 + DDA3937_RS00735 0.17 -1.2
174,495 + DDA3937_RS00735 0.17 +0.0
174,496 - DDA3937_RS00735 0.17 -1.0
174,496 - DDA3937_RS00735 0.17 +0.2
174,496 - DDA3937_RS00735 0.17 -2.1
174,496 - DDA3937_RS00735 0.17 -1.8
174,496 - DDA3937_RS00735 0.17 -1.8
174,496 - DDA3937_RS00735 0.17 -1.5
174,496 - DDA3937_RS00735 0.17 -1.2
174,496 - DDA3937_RS00735 0.17 +0.8
174,496 - DDA3937_RS00735 0.17 -0.1
174,496 - DDA3937_RS00735 0.17 -3.2
174,496 - DDA3937_RS00735 0.17 -2.0
174,496 - DDA3937_RS00735 0.17 -0.6
174,496 - DDA3937_RS00735 0.17 -0.8
174,565 - DDA3937_RS00735 0.23 -1.8
174,565 - DDA3937_RS00735 0.23 -2.0
174,592 - DDA3937_RS00735 0.26 +1.4
174,606 + DDA3937_RS00735 0.27 -3.5
174,879 + DDA3937_RS00735 0.53 -1.8
174,879 + DDA3937_RS00735 0.53 -1.5
174,880 - DDA3937_RS00735 0.53 -0.7
174,978 + DDA3937_RS00735 0.62 -1.2
174,979 - DDA3937_RS00735 0.62 +1.2

Or see this region's nucleotide sequence