Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
85,386	+		DDA3937_RS00365	0.19	+1.1
85,422	+		DDA3937_RS00365	0.24	-1.4
85,423	-		DDA3937_RS00365	0.24	-1.4
85,423	-		DDA3937_RS00365	0.24	+0.8
85,423	-		DDA3937_RS00365	0.24	-3.3
85,506	+		DDA3937_RS00365	0.34	-3.0
85,570	-		DDA3937_RS00365	0.42	+0.3
85,570	-				-1.0
85,570	-		DDA3937_RS00365	0.42	-0.8
85,602	+		DDA3937_RS00365	0.46	-0.4
85,602	+		DDA3937_RS00365	0.46	+2.0
85,603	-		DDA3937_RS00365	0.46	-2.3
85,605	-		DDA3937_RS00365	0.46	-2.2
85,605	-		DDA3937_RS00365	0.46	-0.3
85,762	-		DDA3937_RS00365	0.65	-1.4
85,788	+		DDA3937_RS00365	0.68	-1.8
85,789	-		DDA3937_RS00365	0.69	+1.4
85,943	+		DDA3937_RS00365	0.87	+1.0
85,982	+				-0.4
86,013	+				+0.3
86,013	+				+1.3
86,063	+				-1.1
86,064	-				+0.0
86,064	-				-2.9
86,064	-				+0.5
86,064	-				-0.2
86,064	-				-2.0
86,064	-				-0.5
86,064	-				-1.6
86,064	-				+0.1
86,064	-				-0.2
86,064	-				-3.0
86,064	-				-0.5
86,064	-				-0.6
86,064	-				+0.7
86,064	-				+0.1
86,064	-				-1.4
86,064	-				+3.3
86,064	-				+0.7
86,064	-				-0.4
86,064	-				+0.4
86,064	-				+0.9
86,064	-				-0.7
86,064	-				-2.4
86,065	+				-0.2
86,065	+				-2.2
86,065	+				+1.7
86,065	+				+0.7
86,065	+				+0.6
86,065	+				-1.4
86,065	+				-0.1
86,065	+				-0.2
86,065	+				+1.9
86,065	+				+0.6
86,065	+				-0.1
86,065	+				+0.6
86,065	+				-1.0
86,065	+				+2.0
86,065	+				-0.5
86,065	+				-3.2
86,065	+				+0.5
86,065	+				-2.3
86,065	+				+2.3
86,065	+				+0.2
86,065	+				+2.5
86,065	+				-2.4
86,065	+				-2.0
86,065	+				-1.4
86,065	+				+1.2
86,066	-				-0.1
86,066	-				-1.4
86,066	-				+1.6
86,066	-				+0.5
86,066	-				+1.0
86,066	-				-1.0
86,066	-				+3.1
86,066	-				-0.2
86,066	-				+0.7
86,066	-				-0.5
86,066	-				-0.3
86,066	-				-0.8
86,066	-				+0.6
86,066	-				+1.7
86,066	-				-0.4
86,066	-				+1.1
86,066	-				-1.7
86,066	-				-3.6
86,066	-				-0.1
86,066	-				+0.3
86,066	-				+1.6
86,066	-				-2.0
86,068	-				+0.2
86,068	-				-0.4
86,076	+				+0.3
86,076	+				+0.0
86,077	-				-1.0
86,106	+				-2.7
86,208	-				+2.0
86,324	+				-0.5
86,324	+				-0.9
86,324	+				-0.9
86,325	-				+0.8
86,325	-				+1.8
86,328	+				-2.0
86,333	+				-0.7
86,334	-				-2.1
86,335	+				-0.8
86,336	-				-1.4
86,532	+		DDA3937_RS00370	0.15	+0.4
86,713	-		DDA3937_RS00370	0.31	-1.5
86,777	-		DDA3937_RS00370	0.36	-0.6
86,902	+		DDA3937_RS00370	0.46	-1.5
86,902	+		DDA3937_RS00370	0.46	+1.0
86,902	+		DDA3937_RS00370	0.46	-1.3
86,902	+		DDA3937_RS00370	0.46	-2.7
86,903	-		DDA3937_RS00370	0.47	-1.5
86,937	+		DDA3937_RS00370	0.49	-0.4
86,938	-		DDA3937_RS00370	0.50	+0.5
86,973	+		DDA3937_RS00370	0.52	+0.4
86,974	-		DDA3937_RS00370	0.53	-0.0
87,007	+		DDA3937_RS00370	0.55	-2.2
87,007	+		DDA3937_RS00370	0.55	-2.0
87,088	-		DDA3937_RS00370	0.62	-3.1
87,187	-		DDA3937_RS00370	0.71	+0.3
87,223	+		DDA3937_RS00370	0.74	-2.1
87,223	+		DDA3937_RS00370	0.74	-1.3
87,224	-		DDA3937_RS00370	0.74	-0.7
87,231	+		DDA3937_RS00370	0.74	+0.7
87,232	-		DDA3937_RS00370	0.74	+1.8
87,232	-		DDA3937_RS00370	0.74	-1.4
87,232	-		DDA3937_RS00370	0.74	-2.3
87,283	-		DDA3937_RS00370	0.79	-0.6
87,283	-		DDA3937_RS00370	0.79	+0.1
87,283	-		DDA3937_RS00370	0.79	-1.3
87,294	+		DDA3937_RS00370	0.80	-1.2
87,294	+		DDA3937_RS00370	0.80	-1.5
87,294	+		DDA3937_RS00370	0.80	-0.7
87,295	-		DDA3937_RS00370	0.80	-1.6
87,295	-		DDA3937_RS00370	0.80	+0.5
87,295	-		DDA3937_RS00370	0.80	-0.1
87,295	-		DDA3937_RS00370	0.80	-2.5
87,295	-		DDA3937_RS00370	0.80	+0.5
87,303	+		DDA3937_RS00370	0.80	+0.4
87,335	+		DDA3937_RS00370	0.83	-0.0
87,400	+		DDA3937_RS00370	0.89	-1.2
87,400	+		DDA3937_RS00370	0.89	-0.0
87,400	+		DDA3937_RS00370	0.89	-0.4
87,513	+				+0.7
87,536	-				+1.8
87,549	-				+1.0
87,553	+				-0.5
87,553	+				-2.5
87,553	+				-1.7
87,553	+				-0.7
87,555	+				+0.5
87,555	+				-0.6
87,556	-				+0.5
87,568	+				+0.2
87,568	+				+0.2
87,578	-				-1.3
87,578	-				-0.5
87,661	-				-0.4
87,697	+				+0.6
87,697	+				-2.3
87,697	+				-1.0
87,698	-				+1.4
87,698	-				+0.5
87,736	-				-3.1
87,740	+				-1.7
87,740	+				+0.3
87,740	+				-1.4
87,741	-				-3.9
87,741	-				-0.9
87,759	+				+1.5
87,760	-				+0.4
87,760	-				-0.6
87,760	-				+2.1
87,760	-				-0.2
87,760	-				-0.4
87,761	+				+0.7
87,761	+				-0.7
87,761	+				-1.5
87,761	+				-1.0
87,762	-				-1.2
87,762	-				-3.2
87,794	-				+0.1
87,853	+				-1.5
87,853	+				+2.4
87,854	-				-1.1
87,854	-				-1.8
87,854	-				-0.1
87,854	-				+0.8
88,010	+		DDA3937_RS00375	0.31	+0.2
88,010	+		DDA3937_RS00375	0.31	-1.0
88,010	+		DDA3937_RS00375	0.31	-1.6
88,011	-		DDA3937_RS00375	0.31	-2.5
88,011	-		DDA3937_RS00375	0.31	-1.2
88,011	-		DDA3937_RS00375	0.31	-0.6
88,082	-		DDA3937_RS00375	0.41	-0.1
88,082	-		DDA3937_RS00375	0.41	-1.8
88,100	+		DDA3937_RS00375	0.44	-1.2
88,101	-		DDA3937_RS00375	0.44	-1.0
88,131	+		DDA3937_RS00375	0.48	-2.7
88,132	-		DDA3937_RS00375	0.49	-2.4
88,289	+		DDA3937_RS00375	0.71	-1.2
88,289	+		DDA3937_RS00375	0.71	-1.0
88,289	+		DDA3937_RS00375	0.71	-4.0
88,289	+		DDA3937_RS00375	0.71	-1.8
88,290	-		DDA3937_RS00375	0.71	+2.4
88,340	+		DDA3937_RS00375	0.78	+1.2
88,460	+				-2.1
88,460	+				+1.0
88,460	+				-1.2
88,460	+				-0.5
88,460	+				+0.7
88,461	-				-1.8
88,483	+				-2.0
88,484	-				-1.1
88,487	+				+1.6
88,487	+				+0.8
88,487	+				+0.6
88,488	-				-1.0
88,488	-				-2.3
88,488	-				+0.5
88,488	-				-1.4
88,488	-				-2.7
88,488	-				+0.5
88,488	-				-1.3
88,488	-				-0.7
88,488	-				+0.7
88,488	-				-0.3
88,517	-				+0.3