Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00310 and DDA3937_RS00315 are separated by 4 nucleotides DDA3937_RS00315 and DDA3937_RS00320 are separated by 27 nucleotides
DDA3937_RS00310: DDA3937_RS00310 - carbohydrate ABC transporter permease, at 72,563 to 73,609
_RS00310
DDA3937_RS00315: DDA3937_RS00315 - ABC transporter ATP-binding protein, at 73,614 to 74,717
_RS00315
DDA3937_RS00320: DDA3937_RS00320 - endonuclease/exonuclease/phosphatase family protein, at 74,745 to 75,608
_RS00320
Position (kb) 73
74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.686 kb on + strand, within DDA3937_RS00310 at 72.737 kb on + strand, within DDA3937_RS00310 at 72.737 kb on + strand, within DDA3937_RS00310 at 72.911 kb on + strand, within DDA3937_RS00310 at 72.911 kb on + strand, within DDA3937_RS00310 at 72.912 kb on - strand, within DDA3937_RS00310 at 72.912 kb on - strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.055 kb on + strand, within DDA3937_RS00310 at 73.056 kb on - strand, within DDA3937_RS00310 at 73.056 kb on - strand, within DDA3937_RS00310 at 73.098 kb on + strand, within DDA3937_RS00310 at 73.098 kb on + strand, within DDA3937_RS00310 at 73.098 kb on + strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.099 kb on - strand, within DDA3937_RS00310 at 73.157 kb on - strand, within DDA3937_RS00310 at 73.157 kb on - strand, within DDA3937_RS00310 at 73.363 kb on + strand, within DDA3937_RS00310 at 73.363 kb on + strand, within DDA3937_RS00310 at 73.406 kb on + strand at 73.406 kb on + strand, within DDA3937_RS00310 at 73.406 kb on + strand, within DDA3937_RS00310 at 73.460 kb on + strand, within DDA3937_RS00310 at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.529 kb on + strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.530 kb on - strand at 73.553 kb on + strand at 73.554 kb on - strand at 73.554 kb on - strand at 73.560 kb on + strand at 73.601 kb on - strand at 73.601 kb on - strand at 73.627 kb on + strand at 73.628 kb on - strand at 73.628 kb on - strand at 73.628 kb on - strand at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.863 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.975 kb on + strand, within DDA3937_RS00315 at 74.120 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.231 kb on + strand, within DDA3937_RS00315 at 74.277 kb on + strand, within DDA3937_RS00315 at 74.295 kb on - strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.404 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.675 kb on - strand at 74.675 kb on - strand at 74.716 kb on - strand at 74.718 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.729 kb on - strand at 74.729 kb on - strand at 74.729 kb on - strand at 74.750 kb on + strand at 74.750 kb on + strand at 74.750 kb on + strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.761 kb on - strand at 74.761 kb on - strand at 74.761 kb on - strand at 74.772 kb on + strand at 74.773 kb on - strand at 74.846 kb on + strand, within DDA3937_RS00320 at 74.846 kb on + strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.938 kb on - strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.096 kb on - strand, within DDA3937_RS00320 at 75.098 kb on - strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.367 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.657 kb on - strand at 75.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 72,686 + DDA3937_RS00310 0.12 -1.0 72,686 + DDA3937_RS00310 0.12 -2.2 72,686 + DDA3937_RS00310 0.12 +0.6 72,686 + DDA3937_RS00310 0.12 +3.2 72,737 + DDA3937_RS00310 0.17 -1.8 72,737 + DDA3937_RS00310 0.17 +1.6 72,911 + DDA3937_RS00310 0.33 +1.1 72,911 + DDA3937_RS00310 0.33 +0.6 72,912 - DDA3937_RS00310 0.33 -1.8 72,912 - DDA3937_RS00310 0.33 -2.2 73,055 + DDA3937_RS00310 0.47 +0.1 73,055 + DDA3937_RS00310 0.47 +0.0 73,055 + DDA3937_RS00310 0.47 -2.3 73,055 + DDA3937_RS00310 0.47 -1.0 73,055 + DDA3937_RS00310 0.47 -2.5 73,056 - DDA3937_RS00310 0.47 +1.8 73,056 - DDA3937_RS00310 0.47 +0.0 73,098 + DDA3937_RS00310 0.51 -0.8 73,098 + DDA3937_RS00310 0.51 -3.6 73,098 + DDA3937_RS00310 0.51 +0.8 73,099 - DDA3937_RS00310 0.51 +0.8 73,099 - DDA3937_RS00310 0.51 +0.5 73,099 - DDA3937_RS00310 0.51 -1.6 73,099 - DDA3937_RS00310 0.51 -0.2 73,157 - DDA3937_RS00310 0.57 -1.0 73,157 - DDA3937_RS00310 0.57 -0.9 73,363 + DDA3937_RS00310 0.76 +1.9 73,363 + DDA3937_RS00310 0.76 -1.5 73,406 + +0.0 73,406 + DDA3937_RS00310 0.81 +0.8 73,406 + DDA3937_RS00310 0.81 -1.2 73,460 + DDA3937_RS00310 0.86 -0.3 73,529 + +1.0 73,529 + +2.3 73,529 + -3.5 73,529 + +0.0 73,529 + +0.8 73,529 + +2.1 73,529 + -2.3 73,529 + +1.9 73,530 - -1.0 73,530 - +0.5 73,530 - -2.3 73,530 - +0.3 73,530 - -0.4 73,530 - -1.1 73,530 - -1.4 73,530 - -0.2 73,553 + +0.6 73,554 - +0.9 73,554 - +0.7 73,560 + -0.0 73,601 - -3.1 73,601 - +1.4 73,627 + -1.0 73,628 - -1.2 73,628 - -1.0 73,628 - +1.5 73,770 + DDA3937_RS00315 0.14 +1.6 73,770 + DDA3937_RS00315 0.14 -1.4 73,770 + DDA3937_RS00315 0.14 -0.4 73,770 + -0.4 73,770 + DDA3937_RS00315 0.14 -0.7 73,770 + DDA3937_RS00315 0.14 +0.5 73,770 + DDA3937_RS00315 0.14 +0.4 73,771 - DDA3937_RS00315 0.14 +0.8 73,771 - DDA3937_RS00315 0.14 -0.9 73,771 - DDA3937_RS00315 0.14 +0.9 73,863 + DDA3937_RS00315 0.23 -3.2 73,890 + DDA3937_RS00315 0.25 -0.6 73,890 + DDA3937_RS00315 0.25 +3.2 73,975 + DDA3937_RS00315 0.33 -0.6 74,120 + DDA3937_RS00315 0.46 -0.0 74,225 + DDA3937_RS00315 0.55 -2.0 74,225 + +0.0 74,225 + DDA3937_RS00315 0.55 -1.0 74,225 + DDA3937_RS00315 0.55 -0.3 74,225 + DDA3937_RS00315 0.55 +0.1 74,225 + DDA3937_RS00315 0.55 -0.5 74,225 + DDA3937_RS00315 0.55 +0.3 74,225 + DDA3937_RS00315 0.55 +0.2 74,225 + DDA3937_RS00315 0.55 +1.1 74,226 - DDA3937_RS00315 0.55 +1.0 74,226 - DDA3937_RS00315 0.55 -1.8 74,226 - DDA3937_RS00315 0.55 -1.4 74,231 + DDA3937_RS00315 0.56 -2.8 74,277 + DDA3937_RS00315 0.60 -1.5 74,295 - DDA3937_RS00315 0.62 +0.1 74,380 + DDA3937_RS00315 0.69 -1.4 74,380 + +4.1 74,380 + DDA3937_RS00315 0.69 -1.2 74,380 + DDA3937_RS00315 0.69 -0.8 74,381 - DDA3937_RS00315 0.69 -0.6 74,381 - DDA3937_RS00315 0.69 +0.7 74,404 - DDA3937_RS00315 0.72 +0.8 74,581 - DDA3937_RS00315 0.88 -0.1 74,581 - DDA3937_RS00315 0.88 +1.6 74,581 - DDA3937_RS00315 0.88 -2.3 74,675 - -0.3 74,675 - +1.7 74,716 - +0.4 74,718 + -1.4 74,728 + -0.1 74,728 + +0.8 74,728 + +0.1 74,728 + +1.5 74,729 - -0.0 74,729 - -0.2 74,729 - -0.0 74,750 + -1.5 74,750 + +0.4 74,750 + +2.2 74,751 - -1.4 74,751 - -2.0 74,751 - +1.1 74,751 - +3.5 74,756 + -0.3 74,756 + -3.2 74,756 + +1.1 74,756 + -1.8 74,756 + -3.0 74,760 + +0.1 74,760 + -1.0 74,760 + +1.6 74,760 + -1.8 74,760 + -4.4 74,761 - -0.6 74,761 - -0.4 74,761 - -1.3 74,772 + -0.3 74,773 - -2.2 74,846 + DDA3937_RS00320 0.12 +1.6 74,846 + DDA3937_RS00320 0.12 -1.2 74,847 - DDA3937_RS00320 0.12 +2.2 74,847 - DDA3937_RS00320 0.12 -0.2 74,847 - DDA3937_RS00320 0.12 -2.3 74,847 - DDA3937_RS00320 0.12 +1.2 74,937 + DDA3937_RS00320 0.22 -0.4 74,937 + DDA3937_RS00320 0.22 +2.0 74,938 - DDA3937_RS00320 0.22 -1.7 75,095 + DDA3937_RS00320 0.41 +0.1 75,095 + DDA3937_RS00320 0.41 +0.9 75,095 + DDA3937_RS00320 0.41 -0.0 75,095 + DDA3937_RS00320 0.41 +2.0 75,096 - DDA3937_RS00320 0.41 +0.0 75,098 - DDA3937_RS00320 0.41 -1.2 75,153 + DDA3937_RS00320 0.47 +0.2 75,153 + DDA3937_RS00320 0.47 -1.2 75,153 + DDA3937_RS00320 0.47 -1.4 75,153 + DDA3937_RS00320 0.47 +0.4 75,153 + DDA3937_RS00320 0.47 -2.0 75,153 + DDA3937_RS00320 0.47 +0.1 75,153 + DDA3937_RS00320 0.47 -2.3 75,153 + DDA3937_RS00320 0.47 +1.0 75,153 + DDA3937_RS00320 0.47 -1.7 75,154 - DDA3937_RS00320 0.47 -0.4 75,154 - DDA3937_RS00320 0.47 -3.1 75,154 - DDA3937_RS00320 0.47 +1.5 75,154 - DDA3937_RS00320 0.47 -0.8 75,155 + DDA3937_RS00320 0.47 -1.2 75,155 + DDA3937_RS00320 0.47 -1.8 75,156 - DDA3937_RS00320 0.48 -1.7 75,156 - DDA3937_RS00320 0.48 -1.7 75,156 - DDA3937_RS00320 0.48 -3.6 75,158 + DDA3937_RS00320 0.48 +1.1 75,158 + DDA3937_RS00320 0.48 -2.3 75,159 - DDA3937_RS00320 0.48 -0.0 75,159 - DDA3937_RS00320 0.48 +0.9 75,159 - DDA3937_RS00320 0.48 +0.0 75,366 + DDA3937_RS00320 0.72 +0.1 75,366 + DDA3937_RS00320 0.72 -0.2 75,366 + DDA3937_RS00320 0.72 -1.0 75,367 - DDA3937_RS00320 0.72 +0.0 75,474 - DDA3937_RS00320 0.84 -3.6 75,474 - DDA3937_RS00320 0.84 -0.6 75,657 - -1.0 75,700 - -1.2
Or see this region's nucleotide sequence