Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00290

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00280 and DDA3937_RS00285 are separated by 376 nucleotidesDDA3937_RS00285 and DDA3937_RS00290 are separated by 178 nucleotidesDDA3937_RS00290 and DDA3937_RS00295 are separated by 444 nucleotides DDA3937_RS00280: DDA3937_RS00280 - D-serine ammonia-lyase, at 66,100 to 67,473 _RS00280 DDA3937_RS00285: DDA3937_RS00285 - hypothetical protein, at 67,850 to 68,131 _RS00285 DDA3937_RS00290: DDA3937_RS00290 - DUF1471 domain-containing protein, at 68,310 to 68,576 _RS00290 DDA3937_RS00295: DDA3937_RS00295 - ROK family transcriptional regulator, at 69,021 to 70,124 _RS00295 Position (kb) 68 69Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 67.452 kb on + strandat 67.452 kb on + strandat 67.453 kb on - strandat 67.457 kb on + strandat 67.458 kb on - strandat 67.458 kb on - strandat 67.459 kb on + strandat 67.460 kb on - strandat 67.475 kb on - strandat 67.526 kb on + strandat 67.609 kb on - strandat 67.614 kb on + strandat 67.633 kb on + strandat 67.692 kb on + strandat 67.719 kb on - strandat 67.775 kb on + strandat 67.775 kb on + strandat 67.775 kb on + strandat 67.776 kb on - strandat 67.776 kb on - strandat 67.776 kb on - strandat 67.820 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.857 kb on + strandat 67.857 kb on + strandat 67.857 kb on + strandat 67.857 kb on + strandat 67.912 kb on + strand, within DDA3937_RS00285at 67.913 kb on - strand, within DDA3937_RS00285at 67.992 kb on - strand, within DDA3937_RS00285at 67.992 kb on - strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.259 kb on + strandat 68.401 kb on + strand, within DDA3937_RS00290at 68.401 kb on + strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.568 kb on + strandat 68.568 kb on + strandat 68.568 kb on + strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.569 kb on - strandat 68.608 kb on + strandat 68.609 kb on - strandat 68.614 kb on + strandat 68.672 kb on - strandat 68.702 kb on + strandat 68.702 kb on + strandat 68.702 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 68.972 kb on + strandat 69.199 kb on + strand, within DDA3937_RS00295at 69.233 kb on + strand, within DDA3937_RS00295at 69.233 kb on + strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.234 kb on - strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.235 kb on + strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.236 kb on - strand, within DDA3937_RS00295at 69.247 kb on + strand, within DDA3937_RS00295at 69.248 kb on - strand, within DDA3937_RS00295at 69.494 kb on + strand, within DDA3937_RS00295at 69.495 kb on - strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.496 kb on + strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.497 kb on - strand, within DDA3937_RS00295at 69.503 kb on - strand, within DDA3937_RS00295

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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67,452 + -1.8
67,452 + -3.5
67,453 - -0.4
67,457 + -1.9
67,458 - -2.7
67,458 - -1.2
67,459 + -1.9
67,460 - +0.1
67,475 - -0.7
67,526 + -1.0
67,609 - -2.9
67,614 + -1.1
67,633 + -2.2
67,692 + -0.3
67,719 - -2.2
67,775 + +0.4
67,775 + +1.0
67,775 + +2.7
67,776 - +0.6
67,776 - +2.5
67,776 - +2.2
67,820 + -2.1
67,845 + -2.3
67,845 + +1.8
67,845 + -0.5
67,845 + -1.5
67,845 + +0.0
67,846 - +1.0
67,846 - -0.2
67,846 - +0.8
67,846 - -1.2
67,846 - -1.4
67,846 - -1.0
67,857 + +0.3
67,857 + +0.1
67,857 + -1.3
67,857 + +1.2
67,912 + DDA3937_RS00285 0.22 -2.2
67,913 - DDA3937_RS00285 0.22 -1.0
67,992 - DDA3937_RS00285 0.50 +0.7
67,992 - DDA3937_RS00285 0.50 -1.9
68,053 + DDA3937_RS00285 0.72 +0.5
68,053 + DDA3937_RS00285 0.72 +0.0
68,053 + DDA3937_RS00285 0.72 -1.0
68,053 + DDA3937_RS00285 0.72 -2.0
68,053 + DDA3937_RS00285 0.72 +0.3
68,053 + DDA3937_RS00285 0.72 +1.0
68,053 + DDA3937_RS00285 0.72 -0.7
68,053 + DDA3937_RS00285 0.72 -1.5
68,054 - DDA3937_RS00285 0.72 +1.4
68,054 - DDA3937_RS00285 0.72 -3.9
68,054 - DDA3937_RS00285 0.72 +0.6
68,054 - DDA3937_RS00285 0.72 -1.0
68,054 - DDA3937_RS00285 0.72 -0.5
68,054 - DDA3937_RS00285 0.72 -0.9
68,259 + +1.0
68,401 + DDA3937_RS00290 0.34 -3.5
68,401 + DDA3937_RS00290 0.34 -0.8
68,402 - DDA3937_RS00290 0.34 -3.4
68,402 - DDA3937_RS00290 0.34 -0.3
68,402 - DDA3937_RS00290 0.34 -4.6
68,402 - DDA3937_RS00290 0.34 +0.3
68,568 + -1.3
68,568 + -4.0
68,568 + -0.1
68,569 - +1.8
68,569 - -1.2
68,569 - +0.5
68,569 - -0.1
68,569 - -1.9
68,608 + -2.5
68,609 - -0.1
68,614 + -0.1
68,672 - -1.0
68,702 + +0.6
68,702 + -0.0
68,702 + +0.7
68,972 + +0.2
68,972 + +0.3
68,972 + +1.0
68,972 + +0.5
68,972 + -0.7
69,199 + DDA3937_RS00295 0.16 -1.5
69,233 + DDA3937_RS00295 0.19 +1.4
69,233 + DDA3937_RS00295 0.19 +0.0
69,234 - DDA3937_RS00295 0.19 +0.3
69,234 - DDA3937_RS00295 0.19 -2.4
69,234 - DDA3937_RS00295 0.19 -2.0
69,234 - DDA3937_RS00295 0.19 -2.1
69,235 + DDA3937_RS00295 0.19 +0.0
69,235 + DDA3937_RS00295 0.19 -0.4
69,235 + DDA3937_RS00295 0.19 -0.3
69,235 + DDA3937_RS00295 0.19 -2.0
69,235 + DDA3937_RS00295 0.19 -2.0
69,235 + DDA3937_RS00295 0.19 -1.3
69,235 + DDA3937_RS00295 0.19 -2.2
69,235 + DDA3937_RS00295 0.19 -1.5
69,235 + DDA3937_RS00295 0.19 -0.6
69,235 + DDA3937_RS00295 0.19 +0.2
69,235 + DDA3937_RS00295 0.19 +1.1
69,236 - DDA3937_RS00295 0.19 -1.4
69,236 - DDA3937_RS00295 0.19 -3.2
69,236 - DDA3937_RS00295 0.19 -0.4
69,236 - DDA3937_RS00295 0.19 +0.3
69,247 + DDA3937_RS00295 0.20 -2.5
69,248 - DDA3937_RS00295 0.21 +0.8
69,494 + DDA3937_RS00295 0.43 -3.1
69,495 - DDA3937_RS00295 0.43 -0.5
69,496 + DDA3937_RS00295 0.43 -1.4
69,496 + DDA3937_RS00295 0.43 -4.0
69,496 + DDA3937_RS00295 0.43 -1.7
69,496 + DDA3937_RS00295 0.43 +1.3
69,496 + DDA3937_RS00295 0.43 -0.4
69,497 - DDA3937_RS00295 0.43 -1.7
69,497 - DDA3937_RS00295 0.43 -1.5
69,497 - DDA3937_RS00295 0.43 +1.0
69,497 - DDA3937_RS00295 0.43 -2.5
69,497 - DDA3937_RS00295 0.43 -0.6
69,497 - DDA3937_RS00295 0.43 -0.2
69,497 - DDA3937_RS00295 0.43 +0.3
69,497 - DDA3937_RS00295 0.43 -0.7
69,497 - DDA3937_RS00295 0.43 -1.2
69,497 - DDA3937_RS00295 0.43 +0.0
69,503 - DDA3937_RS00295 0.44 +1.1

Or see this region's nucleotide sequence