Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00155 and DDA3937_RS00160 are separated by 63 nucleotides DDA3937_RS00160 and DDA3937_RS00165 are separated by 155 nucleotides
DDA3937_RS00155: DDA3937_RS00155 - fatty acid biosynthesis protein FabY, at 35,988 to 36,929
_RS00155
DDA3937_RS00160: DDA3937_RS00160 - AsmA family protein, at 36,993 to 38,735
_RS00160
DDA3937_RS00165: DDA3937_RS00165 - uracil-xanthine permease, at 38,891 to 40,279
_RS00165
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 35.994 kb on + strand at 35.994 kb on + strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.063 kb on - strand at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.174 kb on - strand, within DDA3937_RS00155 at 36.176 kb on + strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.227 kb on - strand, within DDA3937_RS00155 at 36.308 kb on + strand, within DDA3937_RS00155 at 36.309 kb on - strand, within DDA3937_RS00155 at 36.413 kb on + strand, within DDA3937_RS00155 at 36.414 kb on - strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.484 kb on - strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.531 kb on + strand, within DDA3937_RS00155 at 36.532 kb on - strand, within DDA3937_RS00155 at 36.548 kb on + strand, within DDA3937_RS00155 at 36.551 kb on + strand, within DDA3937_RS00155 at 36.551 kb on + strand, within DDA3937_RS00155 at 36.552 kb on - strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.687 kb on - strand, within DDA3937_RS00155 at 36.687 kb on - strand, within DDA3937_RS00155 at 36.839 kb on + strand at 36.840 kb on - strand at 36.863 kb on + strand at 36.863 kb on + strand at 36.863 kb on + strand at 36.867 kb on + strand at 36.867 kb on + strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.979 kb on - strand at 36.995 kb on - strand at 37.277 kb on + strand, within DDA3937_RS00160 at 37.278 kb on - strand, within DDA3937_RS00160 at 37.562 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.655 kb on - strand, within DDA3937_RS00160 at 37.655 kb on - strand, within DDA3937_RS00160 at 37.823 kb on + strand, within DDA3937_RS00160 at 37.824 kb on - strand, within DDA3937_RS00160 at 38.112 kb on + strand, within DDA3937_RS00160 at 38.144 kb on + strand at 38.165 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.187 kb on + strand, within DDA3937_RS00160 at 38.203 kb on - strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.259 kb on + strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.260 kb on - strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.263 kb on + strand, within DDA3937_RS00160 at 38.264 kb on - strand, within DDA3937_RS00160 at 38.390 kb on + strand, within DDA3937_RS00160 at 38.391 kb on - strand, within DDA3937_RS00160 at 38.391 kb on - strand, within DDA3937_RS00160 at 38.484 kb on - strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand at 38.487 kb on + strand, within DDA3937_RS00160 at 38.487 kb on + strand, within DDA3937_RS00160 at 38.488 kb on - strand, within DDA3937_RS00160 at 38.488 kb on - strand, within DDA3937_RS00160 at 38.633 kb on + strand at 38.633 kb on + strand at 38.633 kb on + strand at 38.633 kb on + strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.634 kb on - strand at 38.661 kb on + strand at 38.662 kb on - strand at 38.662 kb on - strand at 38.662 kb on - strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.664 kb on + strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.665 kb on - strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.668 kb on + strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.669 kb on - strand at 38.698 kb on - strand at 38.727 kb on - strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.740 kb on + strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.741 kb on - strand at 38.773 kb on + strand at 38.773 kb on + strand at 38.773 kb on + strand at 38.805 kb on - strand at 38.805 kb on - strand at 38.809 kb on + strand at 38.809 kb on + strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.810 kb on - strand at 38.812 kb on + strand at 38.812 kb on + strand at 38.813 kb on - strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.821 kb on + strand at 38.822 kb on - strand at 38.822 kb on - strand at 38.822 kb on - strand at 38.825 kb on + strand at 38.825 kb on + strand at 38.838 kb on + strand at 38.838 kb on + strand at 38.838 kb on + strand at 38.839 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.854 kb on - strand at 38.856 kb on + strand at 38.856 kb on + strand at 38.856 kb on + strand at 38.857 kb on - strand at 38.863 kb on + strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.864 kb on - strand at 38.893 kb on - strand at 38.930 kb on - strand at 38.930 kb on - strand at 39.230 kb on + strand at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.230 kb on + strand, within DDA3937_RS00165 at 39.231 kb on - strand, within DDA3937_RS00165 at 39.231 kb on - strand, within DDA3937_RS00165 at 39.234 kb on + strand, within DDA3937_RS00165 at 39.234 kb on + strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.235 kb on - strand, within DDA3937_RS00165 at 39.271 kb on + strand, within DDA3937_RS00165 at 39.272 kb on - strand, within DDA3937_RS00165 at 39.301 kb on + strand, within DDA3937_RS00165 at 39.301 kb on + strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.302 kb on - strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.369 kb on + strand, within DDA3937_RS00165 at 39.370 kb on - strand, within DDA3937_RS00165 at 39.370 kb on - strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.498 kb on + strand, within DDA3937_RS00165 at 39.499 kb on - strand, within DDA3937_RS00165 at 39.502 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165 at 39.618 kb on - strand, within DDA3937_RS00165
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 35,994 + -2.2 35,994 + -1.0 35,995 - +0.8 35,995 - -1.7 35,995 - -2.6 35,995 - -1.0 35,995 - -3.7 36,033 + -1.2 36,033 + -1.4 36,033 + +1.6 36,033 + -1.5 36,033 + +0.5 36,033 + -2.2 36,034 - -0.3 36,034 - -1.4 36,034 - -1.2 36,034 - -1.1 36,063 - +0.6 36,102 + DDA3937_RS00155 0.12 +0.3 36,102 + DDA3937_RS00155 0.12 -2.4 36,102 + DDA3937_RS00155 0.12 -1.4 36,174 - DDA3937_RS00155 0.20 +0.1 36,176 + DDA3937_RS00155 0.20 -1.7 36,177 - DDA3937_RS00155 0.20 -0.7 36,177 - DDA3937_RS00155 0.20 +0.3 36,177 - DDA3937_RS00155 0.20 -1.1 36,227 - DDA3937_RS00155 0.25 -1.0 36,308 + DDA3937_RS00155 0.34 -1.2 36,309 - DDA3937_RS00155 0.34 -0.2 36,413 + DDA3937_RS00155 0.45 -1.2 36,414 - DDA3937_RS00155 0.45 +0.0 36,483 + DDA3937_RS00155 0.53 +1.0 36,483 + DDA3937_RS00155 0.53 -1.7 36,483 + DDA3937_RS00155 0.53 -0.6 36,483 + DDA3937_RS00155 0.53 -0.5 36,484 - DDA3937_RS00155 0.53 -2.2 36,517 + DDA3937_RS00155 0.56 -0.1 36,517 + DDA3937_RS00155 0.56 -1.0 36,517 + DDA3937_RS00155 0.56 +0.6 36,518 - DDA3937_RS00155 0.56 -2.5 36,518 - DDA3937_RS00155 0.56 -1.4 36,518 - DDA3937_RS00155 0.56 -0.8 36,518 - DDA3937_RS00155 0.56 +2.4 36,531 + DDA3937_RS00155 0.58 -0.3 36,532 - DDA3937_RS00155 0.58 -3.2 36,548 + DDA3937_RS00155 0.59 +1.8 36,551 + DDA3937_RS00155 0.60 -3.2 36,551 + DDA3937_RS00155 0.60 -1.7 36,552 - DDA3937_RS00155 0.60 -0.4 36,590 + DDA3937_RS00155 0.64 -0.9 36,590 + DDA3937_RS00155 0.64 -1.7 36,590 + DDA3937_RS00155 0.64 -2.5 36,590 + DDA3937_RS00155 0.64 -1.3 36,590 + DDA3937_RS00155 0.64 -1.7 36,590 + DDA3937_RS00155 0.64 -0.7 36,590 + DDA3937_RS00155 0.64 +0.7 36,590 + DDA3937_RS00155 0.64 -0.4 36,591 - DDA3937_RS00155 0.64 +0.3 36,591 - DDA3937_RS00155 0.64 -1.0 36,591 - DDA3937_RS00155 0.64 -1.7 36,591 - DDA3937_RS00155 0.64 -1.7 36,591 - DDA3937_RS00155 0.64 -1.2 36,591 - DDA3937_RS00155 0.64 +0.9 36,591 - DDA3937_RS00155 0.64 -1.5 36,591 - +1.6 36,591 - DDA3937_RS00155 0.64 -2.2 36,591 - +0.6 36,591 - DDA3937_RS00155 0.64 -0.4 36,591 - DDA3937_RS00155 0.64 +2.1 36,591 - DDA3937_RS00155 0.64 -1.2 36,686 + DDA3937_RS00155 0.74 -1.8 36,686 + DDA3937_RS00155 0.74 -3.8 36,686 + DDA3937_RS00155 0.74 -1.4 36,686 + DDA3937_RS00155 0.74 +0.6 36,686 + DDA3937_RS00155 0.74 -1.0 36,686 + DDA3937_RS00155 0.74 -2.2 36,687 - DDA3937_RS00155 0.74 +1.3 36,687 - DDA3937_RS00155 0.74 -2.7 36,839 + +1.6 36,840 - +0.7 36,863 + +1.6 36,863 + -2.6 36,863 + -1.7 36,867 + +1.1 36,867 + -2.1 36,868 - -0.4 36,868 - -0.1 36,868 - -0.4 36,868 - -3.2 36,868 - -1.7 36,978 + +0.5 36,978 + -1.5 36,978 + -2.3 36,978 + -0.4 36,979 - -1.7 36,995 - -1.0 37,277 + DDA3937_RS00160 0.16 +0.3 37,278 - DDA3937_RS00160 0.16 -4.0 37,562 + DDA3937_RS00160 0.33 +0.5 37,654 + DDA3937_RS00160 0.38 -3.1 37,654 + DDA3937_RS00160 0.38 +0.3 37,654 + DDA3937_RS00160 0.38 +1.2 37,655 - DDA3937_RS00160 0.38 +1.5 37,655 - DDA3937_RS00160 0.38 +0.8 37,823 + DDA3937_RS00160 0.48 -0.5 37,824 - DDA3937_RS00160 0.48 -1.0 38,112 + DDA3937_RS00160 0.64 +1.6 38,144 + +1.6 38,165 + DDA3937_RS00160 0.67 +0.4 38,187 + DDA3937_RS00160 0.69 +1.1 38,187 + DDA3937_RS00160 0.69 +0.7 38,187 + DDA3937_RS00160 0.69 -1.8 38,187 + DDA3937_RS00160 0.69 +1.4 38,187 + DDA3937_RS00160 0.69 -2.1 38,203 - DDA3937_RS00160 0.69 +1.0 38,259 + DDA3937_RS00160 0.73 -2.4 38,259 + DDA3937_RS00160 0.73 -1.8 38,259 + DDA3937_RS00160 0.73 +1.0 38,259 + DDA3937_RS00160 0.73 -2.8 38,260 - DDA3937_RS00160 0.73 -1.4 38,260 - DDA3937_RS00160 0.73 -0.7 38,260 - DDA3937_RS00160 0.73 -1.0 38,260 - DDA3937_RS00160 0.73 -0.4 38,260 - DDA3937_RS00160 0.73 +0.4 38,263 + DDA3937_RS00160 0.73 -2.1 38,263 + DDA3937_RS00160 0.73 +1.8 38,263 + DDA3937_RS00160 0.73 -1.5 38,264 - DDA3937_RS00160 0.73 -3.8 38,390 + DDA3937_RS00160 0.80 +1.3 38,391 - DDA3937_RS00160 0.80 +1.4 38,391 - DDA3937_RS00160 0.80 -0.9 38,484 - DDA3937_RS00160 0.86 -0.7 38,487 + DDA3937_RS00160 0.86 -0.5 38,487 + DDA3937_RS00160 0.86 +1.5 38,487 + -0.7 38,487 + DDA3937_RS00160 0.86 -0.4 38,487 + DDA3937_RS00160 0.86 +0.7 38,488 - DDA3937_RS00160 0.86 +1.0 38,488 - DDA3937_RS00160 0.86 +0.3 38,633 + -1.7 38,633 + -0.8 38,633 + +0.0 38,633 + +0.3 38,634 - -0.2 38,634 - +1.3 38,634 - -1.0 38,634 - -0.2 38,634 - -2.0 38,634 - -0.5 38,634 - -0.2 38,634 - -3.0 38,661 + -0.5 38,662 - -1.4 38,662 - -2.1 38,662 - +0.2 38,664 + -1.1 38,664 + +0.4 38,664 + -0.3 38,664 + +2.0 38,665 - -1.4 38,665 - +1.4 38,665 - +0.0 38,665 - -2.5 38,668 + +0.2 38,668 + -2.7 38,668 + -2.6 38,668 + +0.6 38,668 + -1.8 38,668 + -2.7 38,668 + -1.0 38,668 + -0.3 38,668 + -1.7 38,668 + -0.2 38,669 - +0.0 38,669 - -1.0 38,669 - +0.5 38,669 - -0.2 38,669 - -0.5 38,698 - -0.3 38,727 - -3.2 38,740 + -1.0 38,740 + +0.8 38,740 + +0.4 38,740 + -2.2 38,741 - -1.0 38,741 - +1.6 38,741 - -2.1 38,741 - +0.6 38,773 + +0.9 38,773 + +1.4 38,773 + +0.6 38,805 - +1.1 38,805 - -1.4 38,809 + -0.9 38,809 + -0.0 38,810 - +1.2 38,810 - +1.6 38,810 - +0.5 38,810 - -0.4 38,810 - -1.2 38,810 - +3.9 38,812 + +0.0 38,812 + +0.4 38,813 - -2.2 38,821 + -0.3 38,821 + -0.3 38,821 + +1.6 38,821 + -2.4 38,822 - +1.2 38,822 - +0.3 38,822 - -1.4 38,825 + -1.2 38,825 + -0.0 38,838 + -1.4 38,838 + +0.4 38,838 + -3.7 38,839 - -2.1 38,854 - -0.9 38,854 - +1.2 38,854 - +0.0 38,854 - -1.0 38,856 + -1.2 38,856 + -1.2 38,856 + -0.9 38,857 - -1.6 38,863 + -1.5 38,864 - -2.2 38,864 - +0.2 38,864 - -1.7 38,864 - +0.0 38,893 - -1.1 38,930 - -3.7 38,930 - -1.9 39,230 + +0.0 39,230 + DDA3937_RS00165 0.24 -1.0 39,230 + DDA3937_RS00165 0.24 -1.2 39,230 + DDA3937_RS00165 0.24 -2.5 39,230 + DDA3937_RS00165 0.24 +1.2 39,230 + DDA3937_RS00165 0.24 -0.2 39,231 - DDA3937_RS00165 0.24 +1.9 39,231 - DDA3937_RS00165 0.24 -2.5 39,234 + DDA3937_RS00165 0.25 -3.0 39,234 + DDA3937_RS00165 0.25 -0.4 39,235 - DDA3937_RS00165 0.25 -0.7 39,235 - DDA3937_RS00165 0.25 -2.8 39,235 - DDA3937_RS00165 0.25 +1.3 39,271 + DDA3937_RS00165 0.27 -0.9 39,272 - DDA3937_RS00165 0.27 +0.6 39,301 + DDA3937_RS00165 0.30 +2.1 39,301 + DDA3937_RS00165 0.30 -1.4 39,302 - DDA3937_RS00165 0.30 -0.4 39,302 - DDA3937_RS00165 0.30 -1.4 39,302 - DDA3937_RS00165 0.30 -1.0 39,302 - DDA3937_RS00165 0.30 -0.7 39,369 + DDA3937_RS00165 0.34 -2.6 39,369 + DDA3937_RS00165 0.34 -0.4 39,369 + DDA3937_RS00165 0.34 +0.2 39,369 + DDA3937_RS00165 0.34 -1.6 39,369 + DDA3937_RS00165 0.34 +0.5 39,370 - DDA3937_RS00165 0.34 +0.0 39,370 - DDA3937_RS00165 0.34 -1.0 39,498 + DDA3937_RS00165 0.44 -0.3 39,498 + DDA3937_RS00165 0.44 -0.6 39,499 - DDA3937_RS00165 0.44 -1.4 39,502 - DDA3937_RS00165 0.44 -3.5 39,618 - DDA3937_RS00165 0.52 -0.4 39,618 - DDA3937_RS00165 0.52 -1.5
Or see this region's nucleotide sequence