Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23120

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,889,920	-		DDA3937_RS23115	0.37	+0.9
1,890,034	+		DDA3937_RS23115	0.75	+2.4
1,890,034	+		DDA3937_RS23115	0.75	-3.0
1,890,034	+		DDA3937_RS23115	0.75	+0.5
1,890,035	-		DDA3937_RS23115	0.76	+0.1
1,890,059	+		DDA3937_RS23115	0.84	-0.1
1,890,060	-		DDA3937_RS23115	0.84	-1.6
1,890,097	+				+0.7
1,890,098	-				-2.5
1,890,152	+				-3.2
1,890,179	+				-2.3
1,890,180	-				-3.4
1,890,180	-				-3.0
1,890,193	+				-2.6
1,890,194	-				+2.4
1,890,194	-				-1.6
1,890,220	+				+0.3
1,890,229	+				-2.1
1,890,230	-				-1.5
1,890,230	-				+0.6
1,890,258	+				-1.6
1,890,277	+				-1.8
1,890,278	-				-2.4
1,890,278	-				+0.1
1,890,292	+				+1.1
1,890,301	-				-1.6
1,890,301	-				+0.4
1,890,304	+				-1.1
1,890,304	+				-0.8
1,890,304	+				-1.6
1,890,305	-				-1.6
1,890,307	+				-1.3
1,890,307	+				-3.2
1,890,308	-				-0.4
1,890,308	-				+1.4
1,890,316	+				-1.3
1,890,316	+				-0.5
1,890,316	+				+2.6
1,890,316	+				-1.1
1,890,316	+				-0.8
1,890,316	+				-1.3
1,890,316	+				-1.5
1,890,316	+				-0.9
1,890,317	-				-1.1
1,890,317	-				+0.5
1,890,317	-				-1.3
1,890,317	-				-1.6
1,890,317	-				-1.3
1,890,317	-				-1.3
1,890,317	-				+2.7
1,890,317	-				+1.0
1,890,320	+				-1.4
1,890,321	-				-2.3
1,890,321	-				-1.3
1,890,331	+				-0.8
1,890,331	+				+0.5
1,890,331	+				-1.8
1,890,331	+				-2.1
1,890,331	+				+0.5
1,890,331	+				+0.4
1,890,331	+				-1.5
1,890,331	+				-3.3
1,890,331	+				-0.1
1,890,331	+				-0.1
1,890,332	-				+4.0
1,890,332	-				-1.1
1,890,332	-				+1.4
1,890,332	-				+2.6
1,890,335	+				+1.3
1,890,335	+				-1.3
1,890,335	+				-3.7
1,890,335	+				-0.1
1,890,335	+				-2.6
1,890,335	+				+1.1
1,890,335	+				+0.5
1,890,336	-				+0.3
1,890,336	-				-0.4
1,890,336	-				-0.2
1,890,336	-				-1.3
1,890,374	+				-3.0
1,890,440	+				+0.2
1,890,441	-				-2.2
1,890,441	-				-0.8
1,890,450	+				+0.7
1,890,457	+				-3.0
1,890,457	+				-2.7
1,890,458	-				-2.6
1,890,458	-				-0.5
1,890,463	+				+0.3
1,890,463	+				-0.5
1,890,463	+				-2.5
1,890,464	-				+0.9
1,890,464	-				-1.1
1,890,464	-				-2.1
1,890,516	+				+1.7
1,890,516	+				-0.1
1,890,516	+				-2.7
1,890,516	+				+0.2
1,890,516	+				+1.9
1,890,517	-				-0.5
1,890,517	-				-1.9
1,890,537	-				-0.8
1,890,591	-				-1.8
1,890,591	-				-2.5
1,890,591	-				-2.6
1,890,680	+				+2.0
1,890,680	+				-3.5
1,890,681	-				+1.3
1,890,681	-				+1.6
1,890,681	-				-0.8
1,890,693	+				+0.2
1,890,693	+				+0.5
1,890,707	+				-0.2
1,890,708	-				-1.9
1,890,727	+				-3.6
1,890,728	-				-1.6
1,890,730	+				+0.0
1,890,730	+				-0.8
1,890,734	+				-0.5
1,890,734	+				+0.2
1,890,734	+				-2.3
1,890,735	-				-3.3
1,890,735	-				-0.4
1,890,735	-				-0.1
1,890,735	-				-0.9
1,890,735	-				-3.1
1,890,735	-				-2.1
1,890,741	-				-3.1
1,890,767	-				-0.2
1,890,767	-				+0.2
1,890,774	+				-0.5
1,890,774	+				-2.4
1,890,774	+				+0.4
1,890,775	-				-1.2
1,890,776	+				-1.6
1,890,776	+				-2.0
1,890,776	+				+1.8
1,890,776	+				+0.2
1,890,776	+				-0.4
1,890,776	+				+0.9
1,890,776	+				-1.3
1,890,777	-				+1.0
1,890,777	-				-1.1
1,890,777	-				-1.3
1,890,777	-				-0.7
1,890,777	-				-1.3
1,890,777	-				-1.6
1,890,777	-				+0.2
1,890,777	-				+0.0
1,890,777	-				-1.1
1,890,800	+				+2.3
1,890,800	+				-0.4
1,890,801	-				+1.0
1,890,801	-				-1.5
1,890,801	-				-0.5
1,890,804	+				-1.6
1,890,804	+				+0.1
1,890,805	-				-1.8
1,890,810	+				-0.6
1,890,810	+				+1.0
1,890,810	+				-1.9
1,890,811	-				+2.3
1,890,811	-				-0.9
1,890,811	-				-0.8
1,890,811	-				-2.5
1,890,811	-				-0.8
1,890,812	+				+1.4
1,890,812	+				-1.5
1,890,812	+				+0.5
1,890,813	-				-0.8
1,890,813	-				+1.1
1,890,813	-				-0.1
1,890,813	-				-0.5
1,890,813	-				+1.4
1,890,890	+				-3.3
1,890,892	+				-0.8
1,890,929	-				-1.1
1,890,929	-				-2.1
1,890,931	+				+2.5
1,890,931	+				-0.8
1,890,931	+				+0.6
1,890,931	+				-3.1
1,890,931	+				-2.2
1,890,931	+				+1.9
1,890,931	+				-1.8
1,890,931	+				-1.8
1,890,931	+				-1.3
1,890,931	+				-0.2
1,890,931	+				-1.1
1,890,932	-				+2.0
1,890,932	-				+0.7
1,890,932	-				-3.2
1,890,932	-				-1.3
1,890,952	+				-0.5
1,890,952	+				+0.0
1,890,952	+				-2.7
1,890,953	-				-1.8
1,890,981	+				-1.8
1,890,982	-				-0.5
1,890,982	-				-2.6
1,890,982	-				-1.7
1,890,982	-				+2.1
1,890,983	+				-2.2
1,890,984	-				+1.0
1,891,038	-		DDA3937_RS23120	0.13	+0.0
1,891,156	-		DDA3937_RS23120	0.26	-1.3
1,891,156	-		DDA3937_RS23120	0.26	-1.5
1,891,156	-		DDA3937_RS23120	0.26	-1.1
1,891,156	-		DDA3937_RS23120	0.26	-0.9
1,891,156	-		DDA3937_RS23120	0.26	-1.5
1,891,156	-		DDA3937_RS23120	0.26	+1.0
1,891,156	-		DDA3937_RS23120	0.26	-1.6
1,891,156	-		DDA3937_RS23120	0.26	+0.1
1,891,156	-		DDA3937_RS23120	0.26	-2.7
1,891,157	+		DDA3937_RS23120	0.26	+0.7
1,891,157	+		DDA3937_RS23120	0.26	-1.8
1,891,173	+		DDA3937_RS23120	0.28	-3.1
1,891,173	+		DDA3937_RS23120	0.28	-1.5
1,891,174	-		DDA3937_RS23120	0.28	-1.3
1,891,185	+		DDA3937_RS23120	0.30	-2.3
1,891,185	+		DDA3937_RS23120	0.30	-1.6
1,891,185	+		DDA3937_RS23120	0.30	-1.6
1,891,186	-		DDA3937_RS23120	0.30	-2.4
1,891,186	-		DDA3937_RS23120	0.30	-1.3
1,891,187	+		DDA3937_RS23120	0.30	-0.8
1,891,187	+		DDA3937_RS23120	0.30	-2.3
1,891,188	-		DDA3937_RS23120	0.30	+1.5
1,891,225	-		DDA3937_RS23120	0.34	-0.2
1,891,225	-		DDA3937_RS23120	0.34	+1.1
1,891,225	-		DDA3937_RS23120	0.34	+2.3
1,891,308	-		DDA3937_RS23120	0.43	+1.7
1,891,308	-		DDA3937_RS23120	0.43	-3.3
1,891,318	+		DDA3937_RS23120	0.44	+0.1
1,891,318	+		DDA3937_RS23120	0.44	-1.5
1,891,319	-		DDA3937_RS23120	0.44	-2.5
1,891,343	+		DDA3937_RS23120	0.47	+0.2
1,891,404	+		DDA3937_RS23120	0.53	+0.9
1,891,404	+		DDA3937_RS23120	0.53	-1.5
1,891,407	-		DDA3937_RS23120	0.54	-1.6
1,891,410	-		DDA3937_RS23120	0.54	-1.7
1,891,550	+		DDA3937_RS23120	0.69	+0.4
1,891,550	+		DDA3937_RS23120	0.69	+0.2
1,891,551	-		DDA3937_RS23120	0.70	-1.6
1,891,551	-		DDA3937_RS23120	0.70	+2.1
1,891,572	-		DDA3937_RS23120	0.72	-0.8
1,891,580	+		DDA3937_RS23120	0.73	-0.3
1,891,587	+		DDA3937_RS23120	0.73	-1.4
1,891,588	-		DDA3937_RS23120	0.74	-0.3
1,891,634	+		DDA3937_RS23120	0.79	+1.6
1,891,727	+		DDA3937_RS23120	0.89	-0.8
1,891,727	+		DDA3937_RS23120	0.89	-1.3
1,891,728	-		DDA3937_RS23120	0.89	-1.9
1,891,728	-		DDA3937_RS23120	0.89	-0.9
1,891,728	-		DDA3937_RS23120	0.89	+1.0
1,891,748	+				-1.6
1,891,748	+				+2.1
1,891,748	+				-2.8
1,891,749	-				-0.2
1,891,749	-				-1.1
1,891,751	+				+2.0
1,891,751	+				-0.9
1,891,751	+				-0.9
1,891,751	+				-1.9
1,891,751	+				-2.6
1,891,752	-				-1.4
1,891,752	-				-1.8
1,891,752	-				-0.8
1,891,753	+				+0.7
1,891,753	+				-1.8
1,891,753	+				+1.5
1,891,753	+				+0.2
1,891,753	+				-0.1
1,891,753	+				-2.1
1,891,753	+				-1.6
1,891,754	-				-1.3
1,891,754	-				-3.0
1,891,754	-				+0.7
1,891,754	-				-2.6
1,891,754	-				-1.1
1,891,754	-				-1.9
1,891,770	+				-0.5
1,891,770	+				-2.2
1,891,771	-				-1.1
1,891,771	-				-1.1
1,891,815	-				-0.1
1,891,838	+				-0.6
1,891,844	+				-1.1
1,891,844	+				-0.9
1,891,844	+				+1.5
1,891,845	-				+0.5
1,891,845	-				-1.3
1,891,872	-				-1.5
1,891,886	-				+0.9
1,892,149	+		DDA3937_RS22125	0.67	-0.1
1,892,149	+		DDA3937_RS22125	0.67	+0.7
1,892,183	+		DDA3937_RS22125	0.82	+2.0
1,892,303	-		DDA3937_RS08355	0.11	-0.5
1,892,309	-		DDA3937_RS08355	0.13	+0.5
1,892,314	-		DDA3937_RS08355	0.15	+0.5
1,892,314	-		DDA3937_RS08355	0.15	+3.0
1,892,314	-		DDA3937_RS08355	0.15	-2.9
1,892,314	-		DDA3937_RS08355	0.15	-1.8
1,892,314	-		DDA3937_RS08355	0.15	-2.2
1,892,318	-		DDA3937_RS08355	0.16	-1.8
1,892,318	-		DDA3937_RS08355	0.16	+1.4
1,892,318	-		DDA3937_RS08355	0.16	-1.5
1,892,318	-		DDA3937_RS08355	0.16	-1.9
1,892,345	+		DDA3937_RS08355	0.25	+1.0
1,892,405	-		DDA3937_RS08355	0.45	+0.1
1,892,514	-		DDA3937_RS08355	0.82	+2.1
1,892,514	-		DDA3937_RS08355	0.82	-1.3
1,892,514	-		DDA3937_RS08355	0.82	-2.9
1,892,514	-		DDA3937_RS08355	0.82	-1.0
1,892,536	-		DDA3937_RS08355	0.89	-3.7
1,892,806	-		DDA3937_RS08360	0.85	-1.5