Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22340

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,150,482	+				+1.6
3,150,482	+				-1.9
3,150,482	+				-2.3
3,150,482	+				-1.4
3,150,482	+				-2.0
3,150,483	-				-1.4
3,150,483	-				-2.2
3,150,483	-				+0.7
3,150,518	+				+3.6
3,150,518	+				-1.2
3,150,518	+				-1.4
3,150,518	+				-0.4
3,150,518	+				+0.1
3,150,518	+				+0.5
3,150,518	+				+0.2
3,150,518	+				-1.4
3,150,518	+				-0.4
3,150,519	-				-2.0
3,150,519	-				+0.3
3,150,519	-				-0.4
3,150,519	-				+1.4
3,150,519	-				-3.2
3,150,519	-				-0.8
3,150,520	+				+0.9
3,150,520	+				+3.5
3,150,520	+				+0.6
3,150,520	+				-3.4
3,150,520	+				+0.3
3,150,521	-				-0.0
3,150,521	-				+0.5
3,150,521	-				-0.8
3,150,521	-				-0.0
3,150,521	-				+0.1
3,150,521	-				+1.2
3,150,521	-				-1.0
3,150,521	-				+1.7
3,150,722	+				-2.4
3,150,722	+				+3.2
3,150,781	+				+0.7
3,150,781	+				+0.0
3,150,781	+				-1.8
3,150,781	+				-1.1
3,150,781	+				-0.2
3,150,782	-				-2.5
3,150,782	-				+1.6
3,150,782	-				+0.7
3,150,782	-				-1.8
3,150,782	-				-2.1
3,150,782	-				-2.2
3,150,782	-				-1.0
3,150,802	+				-2.7
3,150,900	+		DDA3937_RS13850	0.21	+1.8
3,150,901	-		DDA3937_RS13850	0.21	-0.8
3,150,902	+		DDA3937_RS13850	0.22	-2.6
3,150,903	-		DDA3937_RS13850	0.22	-1.6
3,150,921	+		DDA3937_RS13850	0.24	-1.6
3,150,922	-		DDA3937_RS13850	0.24	-1.1
3,150,922	-		DDA3937_RS13850	0.24	-1.0
3,150,922	-		DDA3937_RS13850	0.24	+0.2
3,150,923	+		DDA3937_RS13850	0.25	-3.1
3,150,923	+		DDA3937_RS13850	0.25	-1.0
3,150,924	-		DDA3937_RS13850	0.25	+0.6
3,151,087	+		DDA3937_RS13850	0.47	-1.0
3,151,087	+		DDA3937_RS13850	0.47	+1.5
3,151,088	-		DDA3937_RS13850	0.48	-0.4
3,151,089	+		DDA3937_RS13850	0.48	-2.1
3,151,089	+		DDA3937_RS13850	0.48	+0.5
3,151,089	+		DDA3937_RS13850	0.48	-0.2
3,151,089	+		DDA3937_RS13850	0.48	-0.3
3,151,089	+		DDA3937_RS13850	0.48	-1.6
3,151,090	-		DDA3937_RS13850	0.48	-1.9
3,151,090	-		DDA3937_RS13850	0.48	-2.3
3,151,091	+		DDA3937_RS13850	0.48	-1.0
3,151,112	+		DDA3937_RS13850	0.51	-1.0
3,151,112	+		DDA3937_RS13850	0.51	-1.0
3,151,113	-		DDA3937_RS13850	0.51	-3.2
3,151,113	-		DDA3937_RS13850	0.51	+1.4
3,151,169	-		DDA3937_RS13850	0.59	-2.8
3,151,220	+		DDA3937_RS13850	0.66	-1.2
3,151,221	-		DDA3937_RS13850	0.66	-0.4
3,151,559	-		DDA3937_RS22340	0.38	-2.2
3,151,559	-		DDA3937_RS22340	0.38	+0.2
3,151,559	-		DDA3937_RS22340	0.38	-1.9
3,151,559	-		DDA3937_RS22340	0.38	-3.1
3,151,641	-		DDA3937_RS22340	0.74	-3.5
3,151,696	+				-1.3
3,151,696	+				-2.5
3,151,696	+				+0.4
3,151,696	+				+0.2
3,151,697	-				-3.4
3,151,709	+				-2.6
3,151,709	+				-1.6
3,151,710	-				+2.2
3,151,710	-				-1.4
3,151,710	-				-3.7
3,151,721	+				-0.9
3,151,721	+				-2.0
3,151,722	-				-2.0
3,151,722	-				-2.8
3,151,722	-				-1.2
3,151,759	+				+0.2
3,151,759	+				+0.3
3,151,760	-				-0.2
3,151,760	-				-2.0
3,151,760	-				+0.9
3,151,760	-				-1.2
3,151,760	-				-3.1
3,151,760	-				-0.7
3,151,760	-				-1.6
3,151,769	-				-3.4
3,151,792	-				-2.4
3,151,834	+		DDA3937_RS13855	0.12	+3.2
3,151,834	+		DDA3937_RS13855	0.12	-0.7
3,151,834	+		DDA3937_RS13855	0.12	-2.0
3,151,834	+		DDA3937_RS13855	0.12	+1.9
3,151,835	-		DDA3937_RS13855	0.12	-1.0
3,151,835	-		DDA3937_RS13855	0.12	+0.6
3,151,846	-		DDA3937_RS13855	0.13	-1.6
3,151,895	+		DDA3937_RS13855	0.18	-0.3
3,151,895	+		DDA3937_RS13855	0.18	-2.4
3,151,895	+		DDA3937_RS13855	0.18	+0.2
3,151,895	+		DDA3937_RS13855	0.18	-0.6
3,151,895	+		DDA3937_RS13855	0.18	-0.0
3,151,896	-		DDA3937_RS13855	0.18	-1.2
3,151,909	+		DDA3937_RS13855	0.19	+2.8
3,151,909	+		DDA3937_RS13855	0.19	-0.6
3,151,909	+		DDA3937_RS13855	0.19	+0.6
3,151,910	-		DDA3937_RS13855	0.19	-2.0
3,151,910	-		DDA3937_RS13855	0.19	-1.6
3,151,921	+		DDA3937_RS13855	0.21	+1.7
3,151,922	-		DDA3937_RS13855	0.21	-1.5
3,151,925	-		DDA3937_RS13855	0.21	+0.9
3,151,925	-		DDA3937_RS13855	0.21	-0.9
3,151,925	-		DDA3937_RS13855	0.21	-0.9
3,151,967	-		DDA3937_RS13855	0.25	-3.1
3,151,990	+		DDA3937_RS13855	0.27	+1.6
3,152,016	-		DDA3937_RS13855	0.30	-2.4
3,152,016	-		DDA3937_RS13855	0.30	-2.4
3,152,016	-		DDA3937_RS13855	0.30	-1.3
3,152,016	-		DDA3937_RS13855	0.30	-0.5
3,152,016	-		DDA3937_RS13855	0.30	-1.2
3,152,016	-		DDA3937_RS13855	0.30	+0.1
3,152,098	-		DDA3937_RS13855	0.38	-2.7
3,152,101	+		DDA3937_RS13855	0.38	-0.9
3,152,101	+		DDA3937_RS13855	0.38	-2.5
3,152,102	-		DDA3937_RS13855	0.38	-2.6
3,152,102	-		DDA3937_RS13855	0.38	-0.4
3,152,203	+		DDA3937_RS13855	0.48	+0.6
3,152,203	+		DDA3937_RS13855	0.48	-2.0
3,152,204	-		DDA3937_RS13855	0.48	+0.7
3,152,204	-		DDA3937_RS13855	0.48	-1.0
3,152,206	+		DDA3937_RS13855	0.48	+3.6
3,152,207	-		DDA3937_RS13855	0.48	-0.3
3,152,227	+		DDA3937_RS13855	0.50	-1.5
3,152,227	+		DDA3937_RS13855	0.50	+2.3
3,152,227	+		DDA3937_RS13855	0.50	-0.4
3,152,228	-		DDA3937_RS13855	0.50	-0.8
3,152,248	-		DDA3937_RS13855	0.52	+2.2
3,152,248	-		DDA3937_RS13855	0.52	+3.1
3,152,248	-		DDA3937_RS13855	0.52	-0.8
3,152,248	-		DDA3937_RS13855	0.52	+0.6
3,152,248	-		DDA3937_RS13855	0.52	-0.4
3,152,248	-		DDA3937_RS13855	0.52	-2.1
3,152,270	+		DDA3937_RS13855	0.54	+2.1
3,152,271	-		DDA3937_RS13855	0.55	-2.7
3,152,294	+		DDA3937_RS13855	0.57	+0.6
3,152,294	+		DDA3937_RS13855	0.57	-0.9
3,152,327	-		DDA3937_RS13855	0.60	-1.3
3,152,345	+		DDA3937_RS13855	0.62	+1.3
3,152,346	-		DDA3937_RS13855	0.62	-1.8
3,152,346	-		DDA3937_RS13855	0.62	+0.6
3,152,349	+		DDA3937_RS13855	0.62	-0.4
3,152,349	+		DDA3937_RS13855	0.62	+0.2
3,152,349	+		DDA3937_RS13855	0.62	-1.3
3,152,349	+		DDA3937_RS13855	0.62	-3.0
3,152,360	+		DDA3937_RS13855	0.63	-0.3
3,152,361	-		DDA3937_RS13855	0.63	-1.5
3,152,365	+		DDA3937_RS13855	0.64	-0.9
3,152,365	+		DDA3937_RS13855	0.64	-1.1
3,152,369	+		DDA3937_RS13855	0.64	-2.9
3,152,370	-		DDA3937_RS13855	0.64	-2.8
3,152,400	-		DDA3937_RS13855	0.67	-1.9
3,152,400	-		DDA3937_RS13855	0.67	-0.4
3,152,406	-		DDA3937_RS13855	0.68	+1.0
3,152,406	-		DDA3937_RS13855	0.68	-0.0
3,152,453	+		DDA3937_RS13855	0.72	+0.8
3,152,453	+		DDA3937_RS13855	0.72	+1.3
3,152,485	+		DDA3937_RS13855	0.75	-0.8
3,152,485	+		DDA3937_RS13855	0.75	+0.5
3,152,485	+		DDA3937_RS13855	0.75	-1.6
3,152,486	-		DDA3937_RS13855	0.75	-0.8