Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02450 and DDA3937_RS21810 are separated by 160 nucleotides DDA3937_RS21810 and DDA3937_RS02455 are separated by 99 nucleotides DDA3937_RS02455 and DDA3937_RS02460 are separated by 70 nucleotides
DDA3937_RS02450: DDA3937_RS02450 - molecular chaperone OsmY, at 543,074 to 543,730
_RS02450
DDA3937_RS21810: DDA3937_RS21810 - DUF1328 domain-containing protein, at 543,891 to 544,052
_RS21810
DDA3937_RS02455: DDA3937_RS02455 - stress response protein, at 544,152 to 544,340
_RS02455
DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253
_RS02460
Position (kb) 543
544
545 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.896 kb on + strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.902 kb on + strand at 542.930 kb on + strand at 542.935 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.945 kb on + strand at 542.946 kb on - strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.961 kb on - strand at 542.961 kb on - strand at 542.961 kb on - strand at 543.069 kb on + strand at 543.221 kb on - strand, within DDA3937_RS02450 at 543.250 kb on + strand, within DDA3937_RS02450 at 543.270 kb on + strand, within DDA3937_RS02450 at 543.271 kb on - strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.474 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.597 kb on + strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.733 kb on + strand at 543.733 kb on + strand at 543.733 kb on + strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.771 kb on + strand at 543.824 kb on + strand at 543.824 kb on + strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.825 kb on - strand at 543.846 kb on + strand at 543.908 kb on + strand, within DDA3937_RS21810 at 543.908 kb on + strand, within DDA3937_RS21810 at 543.909 kb on - strand, within DDA3937_RS21810 at 544.007 kb on + strand, within DDA3937_RS21810 at 544.007 kb on + strand, within DDA3937_RS21810 at 544.008 kb on - strand, within DDA3937_RS21810 at 544.030 kb on + strand, within DDA3937_RS21810 at 544.031 kb on - strand, within DDA3937_RS21810 at 544.050 kb on + strand at 544.050 kb on + strand at 544.051 kb on - strand at 544.073 kb on + strand at 544.073 kb on + strand at 544.073 kb on + strand at 544.085 kb on - strand at 544.085 kb on - strand at 544.287 kb on + strand, within DDA3937_RS02455 at 544.287 kb on + strand, within DDA3937_RS02455 at 544.287 kb on + strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.288 kb on - strand, within DDA3937_RS02455 at 544.363 kb on + strand at 544.364 kb on - strand at 544.367 kb on + strand at 544.368 kb on - strand at 544.624 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.652 kb on - strand, within DDA3937_RS02460 at 544.753 kb on + strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.807 kb on - strand, within DDA3937_RS02460 at 544.877 kb on + strand, within DDA3937_RS02460 at 544.878 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.966 kb on + strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.997 kb on - strand, within DDA3937_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 542,892 + +0.0 542,892 + -0.3 542,892 + +0.3 542,892 + -2.5 542,892 + -0.3 542,892 + -1.4 542,892 + +2.6 542,892 + +3.0 542,892 + +1.1 542,892 + -0.3 542,892 + -0.3 542,892 + +0.8 542,893 - -0.4 542,893 - +0.7 542,893 - -3.1 542,893 - -2.0 542,896 + -1.9 542,897 - +1.1 542,897 - -2.0 542,897 - +1.6 542,897 - -0.7 542,897 - +0.6 542,897 - +1.6 542,898 + +0.5 542,898 + -2.1 542,898 + +0.0 542,899 - -0.3 542,899 - -2.9 542,899 - -3.3 542,902 + -1.2 542,930 + -0.7 542,935 - -0.7 542,941 - +2.2 542,941 - -2.3 542,941 - -0.5 542,945 + +0.4 542,946 - -1.0 542,960 + -2.6 542,960 + -1.0 542,960 + +1.9 542,960 + -4.4 542,961 - -2.7 542,961 - -3.5 542,961 - -2.7 543,069 + -2.7 543,221 - DDA3937_RS02450 0.22 +1.9 543,250 + DDA3937_RS02450 0.27 -2.3 543,270 + DDA3937_RS02450 0.30 -2.2 543,271 - DDA3937_RS02450 0.30 +0.2 543,275 + DDA3937_RS02450 0.31 -3.0 543,275 + DDA3937_RS02450 0.31 -2.4 543,276 - DDA3937_RS02450 0.31 -2.2 543,276 - DDA3937_RS02450 0.31 +0.7 543,276 - DDA3937_RS02450 0.31 -2.3 543,474 + DDA3937_RS02450 0.61 +0.3 543,498 + DDA3937_RS02450 0.65 -0.6 543,498 + DDA3937_RS02450 0.65 -0.6 543,498 + DDA3937_RS02450 0.65 -3.7 543,515 + DDA3937_RS02450 0.67 -0.7 543,515 + DDA3937_RS02450 0.67 -0.7 543,515 + DDA3937_RS02450 0.67 +1.3 543,515 + DDA3937_RS02450 0.67 -0.5 543,516 - DDA3937_RS02450 0.67 -0.3 543,516 - DDA3937_RS02450 0.67 +0.9 543,516 - DDA3937_RS02450 0.67 +0.0 543,516 - DDA3937_RS02450 0.67 -1.6 543,516 - DDA3937_RS02450 0.67 -0.1 543,597 + DDA3937_RS02450 0.80 -1.2 543,598 - DDA3937_RS02450 0.80 -1.2 543,598 - DDA3937_RS02450 0.80 -0.8 543,598 - DDA3937_RS02450 0.80 -2.5 543,733 + -2.5 543,733 + -2.7 543,733 + +1.9 543,734 - -2.7 543,734 - +3.0 543,734 - -0.4 543,771 + -1.7 543,824 + +0.3 543,824 + -1.2 543,825 - -0.6 543,825 - -3.0 543,825 - +0.0 543,825 - -0.3 543,825 - -1.0 543,825 - +1.1 543,825 - -1.0 543,825 - +1.4 543,825 - -1.2 543,846 + +0.0 543,908 + DDA3937_RS21810 0.10 -1.8 543,908 + DDA3937_RS21810 0.10 +0.1 543,909 - DDA3937_RS21810 0.11 -2.6 544,007 + DDA3937_RS21810 0.72 +0.3 544,007 + DDA3937_RS21810 0.72 +0.6 544,008 - DDA3937_RS21810 0.72 -1.7 544,030 + DDA3937_RS21810 0.86 -0.6 544,031 - DDA3937_RS21810 0.86 +1.0 544,050 + -0.8 544,050 + -1.9 544,051 - +1.6 544,073 + -0.1 544,073 + +0.9 544,073 + -0.2 544,085 - -2.4 544,085 - -2.9 544,287 + DDA3937_RS02455 0.71 -2.5 544,287 + DDA3937_RS02455 0.71 -0.7 544,287 + DDA3937_RS02455 0.71 +2.0 544,288 - DDA3937_RS02455 0.72 -0.4 544,288 - DDA3937_RS02455 0.72 -2.6 544,288 - DDA3937_RS02455 0.72 -0.4 544,288 - DDA3937_RS02455 0.72 -0.7 544,363 + -2.5 544,364 - -0.7 544,367 + -0.1 544,368 - -0.4 544,624 + DDA3937_RS02460 0.25 -0.3 544,651 + DDA3937_RS02460 0.28 -0.7 544,651 + DDA3937_RS02460 0.28 -2.0 544,651 + DDA3937_RS02460 0.28 -0.9 544,652 - DDA3937_RS02460 0.29 +0.5 544,753 + DDA3937_RS02460 0.41 -1.2 544,754 - DDA3937_RS02460 0.41 -3.5 544,754 - DDA3937_RS02460 0.41 -3.3 544,754 - DDA3937_RS02460 0.41 -2.2 544,754 - DDA3937_RS02460 0.41 -1.0 544,754 - DDA3937_RS02460 0.41 -2.0 544,807 - DDA3937_RS02460 0.47 -0.2 544,877 + DDA3937_RS02460 0.55 +1.1 544,878 - DDA3937_RS02460 0.55 +0.1 544,934 - DDA3937_RS02460 0.62 +0.8 544,934 - DDA3937_RS02460 0.62 +0.5 544,966 + DDA3937_RS02460 0.66 -0.1 544,967 - DDA3937_RS02460 0.66 +1.5 544,967 - DDA3937_RS02460 0.66 +0.4 544,969 + DDA3937_RS02460 0.66 +1.7 544,969 + DDA3937_RS02460 0.66 +2.4 544,970 - DDA3937_RS02460 0.66 -0.7 544,970 - DDA3937_RS02460 0.66 -0.3 544,997 - DDA3937_RS02460 0.70 +3.8
Or see this region's nucleotide sequence