Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21510

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,898,942	+		DDA3937_RS21505	0.45	-2.3
4,898,942	+		DDA3937_RS21505	0.45	-1.5
4,898,946	+		DDA3937_RS21505	0.45	+3.2
4,898,946	+		DDA3937_RS21505	0.45	-1.4
4,898,947	-		DDA3937_RS21505	0.46	-2.1
4,898,947	-		DDA3937_RS21505	0.46	+0.1
4,898,961	+		DDA3937_RS21505	0.46	-0.9
4,898,961	+		DDA3937_RS21505	0.46	+0.8
4,898,970	-		DDA3937_RS21505	0.47	-0.9
4,899,039	-		DDA3937_RS21505	0.51	-1.7
4,899,039	-		DDA3937_RS21505	0.51	-0.5
4,899,069	+		DDA3937_RS21505	0.53	+1.8
4,899,069	+		DDA3937_RS21505	0.53	+0.7
4,899,070	-		DDA3937_RS21505	0.53	-1.5
4,899,070	-		DDA3937_RS21505	0.53	+0.7
4,899,150	-		DDA3937_RS21505	0.58	+2.7
4,899,185	+		DDA3937_RS21505	0.60	+0.6
4,899,185	+		DDA3937_RS21505	0.60	-0.4
4,899,185	+		DDA3937_RS21505	0.60	-1.9
4,899,185	+		DDA3937_RS21505	0.60	-1.5
4,899,185	+		DDA3937_RS21505	0.60	-2.9
4,899,185	+		DDA3937_RS21505	0.60	-2.3
4,899,185	+		DDA3937_RS21505	0.60	-0.4
4,899,185	+		DDA3937_RS21505	0.60	-4.5
4,899,186	-		DDA3937_RS21505	0.60	-1.4
4,899,186	-		DDA3937_RS21505	0.60	+0.0
4,899,246	+		DDA3937_RS21505	0.63	-0.7
4,899,247	-		DDA3937_RS21505	0.63	-0.9
4,899,291	+		DDA3937_RS21505	0.66	-2.3
4,899,291	+		DDA3937_RS21505	0.66	+1.3
4,899,291	+		DDA3937_RS21505	0.66	-2.8
4,899,291	+		DDA3937_RS21505	0.66	+1.7
4,899,292	-		DDA3937_RS21505	0.66	-2.4
4,899,292	-		DDA3937_RS21505	0.66	+0.8
4,899,292	-		DDA3937_RS21505	0.66	-3.2
4,899,294	-		DDA3937_RS21505	0.66	+0.4
4,899,334	-		DDA3937_RS21505	0.69	+0.3
4,899,375	+		DDA3937_RS21505	0.71	+0.2
4,899,376	-		DDA3937_RS21505	0.71	-2.2
4,899,378	+		DDA3937_RS21505	0.71	-0.6
4,899,378	+		DDA3937_RS21505	0.71	+0.1
4,899,379	-		DDA3937_RS21505	0.71	-1.0
4,899,379	-		DDA3937_RS21505	0.71	-2.3
4,899,379	-		DDA3937_RS21505	0.71	-2.5
4,899,480	+		DDA3937_RS21505	0.77	-3.4
4,899,480	+		DDA3937_RS21505	0.77	-1.0
4,899,481	-		DDA3937_RS21505	0.77	+0.6
4,899,514	-		DDA3937_RS21505	0.79	-2.5
4,899,541	-		DDA3937_RS21505	0.81	-1.2
4,899,541	-		DDA3937_RS21505	0.81	-0.6
4,899,548	+		DDA3937_RS21505	0.81	+1.4
4,899,565	-		DDA3937_RS21505	0.82	-2.8
4,899,566	+		DDA3937_RS21505	0.82	-0.7
4,899,567	-		DDA3937_RS21505	0.82	+2.3
4,899,598	+		DDA3937_RS21505	0.84	+1.8
4,899,598	+		DDA3937_RS21505	0.84	-2.3
4,899,598	+		DDA3937_RS21505	0.84	-0.5
4,899,599	-		DDA3937_RS21505	0.84	+0.4
4,899,599	-		DDA3937_RS21505	0.84	+1.6
4,899,599	-		DDA3937_RS21505	0.84	+0.1
4,899,646	+		DDA3937_RS21505	0.87	-0.2
4,899,655	+		DDA3937_RS21505	0.88	-2.7
4,899,667	-		DDA3937_RS21505	0.88	+1.2
4,899,668	+		DDA3937_RS21505	0.88	-1.1
4,899,669	-		DDA3937_RS21505	0.88	+0.3
4,899,697	-				-2.2
4,899,808	-				-0.7
4,899,816	-				+0.5
4,899,816	-				+2.0
4,899,816	-				+1.0
4,899,816	-				-0.6
4,899,816	-				+0.6
4,899,828	-				+0.6
4,899,855	+				-2.8
4,899,864	+				-1.4
4,899,871	-				-1.2
4,900,060	+		DDA3937_RS21510	0.19	-1.3
4,900,060	+		DDA3937_RS21510	0.19	+1.6
4,900,061	-		DDA3937_RS21510	0.19	-1.4
4,900,063	+		DDA3937_RS21510	0.20	+0.2
4,900,074	+				+0.6
4,900,074	+		DDA3937_RS21510	0.21	-0.1
4,900,074	+		DDA3937_RS21510	0.21	-2.1
4,900,074	+		DDA3937_RS21510	0.21	-3.0
4,900,074	+		DDA3937_RS21510	0.21	+2.6
4,900,075	-		DDA3937_RS21510	0.21	-0.8
4,900,078	+		DDA3937_RS21510	0.21	-2.3
4,900,078	+		DDA3937_RS21510	0.21	-0.4
4,900,078	+		DDA3937_RS21510	0.21	+0.2
4,900,078	+		DDA3937_RS21510	0.21	-0.9
4,900,078	+		DDA3937_RS21510	0.21	+0.4
4,900,078	+		DDA3937_RS21510	0.21	+0.3
4,900,079	-				+1.6
4,900,079	-		DDA3937_RS21510	0.21	+2.1
4,900,079	-		DDA3937_RS21510	0.21	-1.9
4,900,079	-		DDA3937_RS21510	0.21	+2.5
4,900,159	+		DDA3937_RS21510	0.30	+1.4
4,900,160	-		DDA3937_RS21510	0.30	-2.9
4,900,201	-		DDA3937_RS21510	0.34	-1.3
4,900,201	-		DDA3937_RS21510	0.34	+0.0
4,900,201	-		DDA3937_RS21510	0.34	+0.3
4,900,311	-		DDA3937_RS21510	0.46	+0.0
4,900,312	+		DDA3937_RS21510	0.46	+2.1
4,900,312	+		DDA3937_RS21510	0.46	-0.5
4,900,323	-		DDA3937_RS21510	0.47	-0.7
4,900,508	+		DDA3937_RS21510	0.66	-0.8
4,900,508	+		DDA3937_RS21510	0.66	-1.2
4,900,508	+		DDA3937_RS21510	0.66	-1.0
4,900,509	-		DDA3937_RS21510	0.67	+0.0
4,900,510	+		DDA3937_RS21510	0.67	-2.8
4,900,510	+		DDA3937_RS21510	0.67	+0.8
4,900,510	+		DDA3937_RS21510	0.67	+0.9
4,900,511	-		DDA3937_RS21510	0.67	-1.5
4,900,511	-		DDA3937_RS21510	0.67	-3.0
4,900,512	+		DDA3937_RS21510	0.67	-1.6
4,900,512	+		DDA3937_RS21510	0.67	-2.5
4,900,512	+		DDA3937_RS21510	0.67	-0.4
4,900,541	+		DDA3937_RS21510	0.70	-1.8
4,900,541	+		DDA3937_RS21510	0.70	-0.4
4,900,541	+		DDA3937_RS21510	0.70	-2.0
4,900,541	+		DDA3937_RS21510	0.70	-0.7
4,900,541	+		DDA3937_RS21510	0.70	+0.1
4,900,541	+		DDA3937_RS21510	0.70	-2.3
4,900,541	+		DDA3937_RS21510	0.70	-1.1
4,900,541	+		DDA3937_RS21510	0.70	+0.7
4,900,541	+		DDA3937_RS21510	0.70	-0.6
4,900,542	-		DDA3937_RS21510	0.70	-1.0
4,900,542	-		DDA3937_RS21510	0.70	-0.5
4,900,543	+		DDA3937_RS21510	0.70	-2.4
4,900,543	+		DDA3937_RS21510	0.70	-0.7
4,900,543	+		DDA3937_RS21510	0.70	-0.7
4,900,543	+		DDA3937_RS21510	0.70	-1.5
4,900,543	+		DDA3937_RS21510	0.70	-1.9
4,900,625	+		DDA3937_RS21510	0.79	-3.3
4,900,675	+		DDA3937_RS21510	0.84	+0.4
4,900,676	-		DDA3937_RS21510	0.84	-1.5
4,900,678	+		DDA3937_RS21510	0.84	+0.7
4,900,687	+		DDA3937_RS21510	0.85	-2.0
4,900,728	+				-1.0
4,900,728	+		DDA3937_RS21510	0.90	-2.8
4,900,763	+				-0.4
4,900,776	-				+3.5
4,900,782	-				-1.0
4,900,782	-				-1.5
4,900,789	+				-0.6
4,900,789	+				+0.7
4,900,789	+				-2.2
4,900,790	-				+3.5
4,900,790	-				-1.9
4,900,793	+				-2.6
4,900,876	-				-3.1
4,900,881	-				-2.1
4,900,894	+				-1.7
4,900,923	-				-0.4
4,900,926	+				-2.6
4,900,927	-				-3.2
4,900,927	-				-3.9
4,900,929	-				-1.8
4,900,979	+				-2.8
4,901,040	-		DDA3937_RS21515	0.12	-1.1
4,901,142	-		DDA3937_RS21515	0.20	-2.2
4,901,172	+		DDA3937_RS21515	0.23	-0.3
4,901,219	+		DDA3937_RS21515	0.27	-4.1
4,901,282	+		DDA3937_RS21515	0.32	-1.7
4,901,283	-		DDA3937_RS21515	0.32	+1.0
4,901,283	-		DDA3937_RS21515	0.32	-0.9
4,901,283	-		DDA3937_RS21515	0.32	-1.7
4,901,384	+		DDA3937_RS21515	0.41	-2.9
4,901,384	+		DDA3937_RS21515	0.41	+0.7
4,901,387	-		DDA3937_RS21515	0.41	+0.8
4,901,437	-		DDA3937_RS21515	0.46	+0.6
4,901,527	+		DDA3937_RS21515	0.53	-2.9
4,901,528	-		DDA3937_RS21515	0.53	+1.0
4,901,612	+		DDA3937_RS21515	0.61	+0.2
4,901,648	+		DDA3937_RS21515	0.64	-0.3
4,901,652	-		DDA3937_RS21515	0.64	-2.1