Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21315

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,855,612	-		DDA3937_RS21310	0.37	-0.7
4,855,871	-		DDA3937_RS21310	0.56	-1.8
4,855,880	+		DDA3937_RS21310	0.57	-1.2
4,855,880	+		DDA3937_RS21310	0.57	+0.3
4,855,881	-		DDA3937_RS21310	0.57	-2.1
4,855,887	-		DDA3937_RS21310	0.57	-1.0
4,856,051	+		DDA3937_RS21310	0.69	-0.5
4,856,052	-		DDA3937_RS21310	0.69	-1.0
4,856,052	-		DDA3937_RS21310	0.69	+2.7
4,856,161	-		DDA3937_RS21310	0.77	+0.9
4,856,200	+		DDA3937_RS21310	0.80	-0.7
4,856,240	+		DDA3937_RS21310	0.83	-1.2
4,856,359	+				-0.4
4,856,360	-				-0.4
4,856,517	-				-2.8
4,856,544	+				-2.7
4,856,544	+				-2.7
4,856,575	+				-0.8
4,856,576	-				+0.0
4,856,576	-				-0.0
4,856,582	+				-1.9
4,856,583	-				-1.5
4,856,608	+				-1.4
4,856,609	-				-3.0
4,856,609	-				-1.7
4,856,753	+		DDA3937_RS21315	0.16	+1.6
4,856,754	-		DDA3937_RS21315	0.16	+0.2
4,856,754	-		DDA3937_RS21315	0.16	+0.6
4,856,754	-		DDA3937_RS21315	0.16	+2.5
4,856,769	+		DDA3937_RS21315	0.17	-2.0
4,856,769	+		DDA3937_RS21315	0.17	-0.7
4,856,769	+		DDA3937_RS21315	0.17	-4.4
4,856,770	-		DDA3937_RS21315	0.17	-3.4
4,856,770	-		DDA3937_RS21315	0.17	+1.3
4,856,770	-		DDA3937_RS21315	0.17	-0.1
4,856,776	+		DDA3937_RS21315	0.18	-1.7
4,856,776	+		DDA3937_RS21315	0.18	-1.8
4,856,776	+		DDA3937_RS21315	0.18	+0.2
4,856,804	+		DDA3937_RS21315	0.20	-1.1
4,856,818	+		DDA3937_RS21315	0.21	-2.1
4,856,851	-		DDA3937_RS21315	0.23	+1.7
4,856,854	+		DDA3937_RS21315	0.24	-3.7
4,856,855	-		DDA3937_RS21315	0.24	+0.9
4,856,855	-		DDA3937_RS21315	0.24	-1.0
4,856,905	+		DDA3937_RS21315	0.27	-2.5
4,856,906	-		DDA3937_RS21315	0.28	-0.0
4,856,906	-				-0.4
4,856,974	+		DDA3937_RS21315	0.33	-1.8
4,856,974	+		DDA3937_RS21315	0.33	-2.0
4,856,980	+		DDA3937_RS21315	0.33	-1.8
4,856,981	-		DDA3937_RS21315	0.33	-2.1
4,856,981	-		DDA3937_RS21315	0.33	-1.5
4,856,983	-		DDA3937_RS21315	0.33	+1.6
4,856,983	-		DDA3937_RS21315	0.33	+0.9
4,857,012	-		DDA3937_RS21315	0.36	-0.4
4,857,014	+		DDA3937_RS21315	0.36	-1.4
4,857,015	-		DDA3937_RS21315	0.36	+0.8
4,857,018	+		DDA3937_RS21315	0.36	-1.4
4,857,018	+		DDA3937_RS21315	0.36	+0.2
4,857,019	-		DDA3937_RS21315	0.36	-1.0
4,857,019	-		DDA3937_RS21315	0.36	+0.5
4,857,019	-		DDA3937_RS21315	0.36	-0.1
4,857,019	-		DDA3937_RS21315	0.36	-0.3
4,857,025	+		DDA3937_RS21315	0.37	-2.0
4,857,025	+		DDA3937_RS21315	0.37	-2.1
4,857,025	+		DDA3937_RS21315	0.37	+2.6
4,857,026	-		DDA3937_RS21315	0.37	-2.7
4,857,060	+		DDA3937_RS21315	0.39	-0.7
4,857,065	+		DDA3937_RS21315	0.40	-3.3
4,857,084	-		DDA3937_RS21315	0.41	-1.1
4,857,086	+		DDA3937_RS21315	0.41	-3.0
4,857,087	-		DDA3937_RS21315	0.41	-2.3
4,857,087	-		DDA3937_RS21315	0.41	+0.5
4,857,118	+		DDA3937_RS21315	0.44	+2.0
4,857,118	+		DDA3937_RS21315	0.44	+0.5
4,857,141	+		DDA3937_RS21315	0.45	-1.1
4,857,141	+		DDA3937_RS21315	0.45	+1.5
4,857,141	+		DDA3937_RS21315	0.45	-2.5
4,857,141	+		DDA3937_RS21315	0.45	-2.2
4,857,142	-		DDA3937_RS21315	0.45	+1.0
4,857,176	+		DDA3937_RS21315	0.48	-1.7
4,857,274	+		DDA3937_RS21315	0.55	-2.0
4,857,274	+		DDA3937_RS21315	0.55	-0.2
4,857,274	+		DDA3937_RS21315	0.55	-2.0
4,857,274	+		DDA3937_RS21315	0.55	-1.6
4,857,274	+		DDA3937_RS21315	0.55	-0.6
4,857,274	+		DDA3937_RS21315	0.55	-0.9
4,857,275	-		DDA3937_RS21315	0.55	-0.3
4,857,275	-		DDA3937_RS21315	0.55	+0.9
4,857,275	-		DDA3937_RS21315	0.55	+0.2
4,857,285	+		DDA3937_RS21315	0.56	+0.2
4,857,286	-		DDA3937_RS21315	0.56	-2.2
4,857,305	-		DDA3937_RS21315	0.58	-3.3
4,857,331	+		DDA3937_RS21315	0.60	+2.1
4,857,331	+		DDA3937_RS21315	0.60	-3.6
4,857,332	-		DDA3937_RS21315	0.60	-1.5
4,857,332	-		DDA3937_RS21315	0.60	-2.8
4,857,332	-		DDA3937_RS21315	0.60	-2.9
4,857,343	+		DDA3937_RS21315	0.61	+0.0
4,857,344	-		DDA3937_RS21315	0.61	+1.0
4,857,367	+		DDA3937_RS21315	0.62	-1.2
4,857,376	-		DDA3937_RS21315	0.63	-0.7
4,857,409	+		DDA3937_RS21315	0.66	-1.4
4,857,433	+		DDA3937_RS21315	0.67	-4.3
4,857,465	+		DDA3937_RS21315	0.70	-3.5
4,857,476	+		DDA3937_RS21315	0.71	+0.8
4,857,477	-		DDA3937_RS21315	0.71	-0.5
4,857,477	-		DDA3937_RS21315	0.71	-0.9
4,857,477	-		DDA3937_RS21315	0.71	-1.0
4,857,508	+		DDA3937_RS21315	0.73	+0.8
4,857,509	-		DDA3937_RS21315	0.73	-1.3
4,857,509	-		DDA3937_RS21315	0.73	+0.5
4,857,509	-		DDA3937_RS21315	0.73	+0.0
4,857,509	-		DDA3937_RS21315	0.73	-0.5
4,857,510	+		DDA3937_RS21315	0.73	+0.2
4,857,511	-		DDA3937_RS21315	0.73	+0.6
4,857,511	-		DDA3937_RS21315	0.73	+1.4
4,857,511	-		DDA3937_RS21315	0.73	-1.1
4,857,524	+		DDA3937_RS21315	0.74	-2.1
4,857,524	+		DDA3937_RS21315	0.74	-0.9
4,857,542	-		DDA3937_RS21315	0.76	-1.5
4,857,589	+		DDA3937_RS21315	0.79	-2.3
4,857,689	-		DDA3937_RS21315	0.87	-0.0
4,857,691	-		DDA3937_RS21315	0.87	+1.2
4,857,691	-				-0.4
4,857,723	-		DDA3937_RS21315	0.89	+1.1
4,857,730	+		DDA3937_RS21315	0.90	-1.3
4,857,730	+		DDA3937_RS21315	0.90	-3.3
4,857,731	-				-2.8
4,857,731	-				+0.4
4,857,843	+				-2.1
4,857,843	+				+0.3
4,857,843	+				-2.0
4,857,843	+				+2.6
4,857,843	+				+0.0
4,858,135	-				-2.7
4,858,164	+				-2.0
4,858,196	-				-2.1
4,858,220	-				+2.9
4,858,223	+				+0.8
4,858,223	+				-3.3
4,858,223	+				+0.4
4,858,232	+				-2.1
4,858,245	+				-1.9
4,858,245	+				+1.0
4,858,245	+				-0.2
4,858,245	+				-1.6
4,858,254	+				-1.8
4,858,254	+				+0.6
4,858,255	-				+0.6
4,858,257	+				-2.2
4,858,258	-				-1.0
4,858,258	-				+0.7
4,858,280	-				+0.9
4,858,280	-				+0.5
4,858,310	-				-2.5
4,858,323	+				-0.2
4,858,323	+				-0.4
4,858,345	+				+1.3
4,858,443	+				-1.3
4,858,636	+		DDA3937_RS21325	0.26	-2.6
4,858,694	+		DDA3937_RS21325	0.32	+0.2
4,858,792	+		DDA3937_RS21325	0.42	+1.1
4,858,832	+		DDA3937_RS21325	0.46	-2.3