Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21125 and DDA3937_RS21130 are separated by 73 nucleotides DDA3937_RS21130 and DDA3937_RS21135 are separated by 140 nucleotides DDA3937_RS21135 and DDA3937_RS21140 are separated by 120 nucleotides
DDA3937_RS21125: DDA3937_RS21125 - alkylhydroperoxidase domain protein, at 4,809,146 to 4,810,264
_RS21125
DDA3937_RS21130: DDA3937_RS21130 - glucokinase, at 4,810,338 to 4,811,306
_RS21130
DDA3937_RS21135: DDA3937_RS21135 - DUF3861 domain-containing protein, at 4,811,447 to 4,811,737
_RS21135
DDA3937_RS21140: DDA3937_RS21140 - MarR family transcriptional regulator, at 4,811,858 to 4,812,298
_RS21140
Position (kb) 4810
4811
4812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4809.360 kb on + strand, within DDA3937_RS21125 at 4809.371 kb on + strand, within DDA3937_RS21125 at 4809.524 kb on - strand, within DDA3937_RS21125 at 4809.543 kb on + strand, within DDA3937_RS21125 at 4809.700 kb on + strand, within DDA3937_RS21125 at 4809.700 kb on + strand, within DDA3937_RS21125 at 4809.700 kb on + strand, within DDA3937_RS21125 at 4809.700 kb on + strand, within DDA3937_RS21125 at 4809.700 kb on + strand, within DDA3937_RS21125 at 4809.700 kb on + strand, within DDA3937_RS21125 at 4809.701 kb on - strand, within DDA3937_RS21125 at 4809.701 kb on - strand, within DDA3937_RS21125 at 4809.701 kb on - strand, within DDA3937_RS21125 at 4809.701 kb on - strand, within DDA3937_RS21125 at 4809.701 kb on - strand, within DDA3937_RS21125 at 4809.701 kb on - strand, within DDA3937_RS21125 at 4809.809 kb on + strand, within DDA3937_RS21125 at 4809.829 kb on + strand, within DDA3937_RS21125 at 4809.853 kb on + strand, within DDA3937_RS21125 at 4809.853 kb on + strand, within DDA3937_RS21125 at 4809.854 kb on - strand, within DDA3937_RS21125 at 4809.854 kb on - strand, within DDA3937_RS21125 at 4809.854 kb on - strand, within DDA3937_RS21125 at 4809.880 kb on + strand, within DDA3937_RS21125 at 4809.880 kb on + strand, within DDA3937_RS21125 at 4809.880 kb on + strand, within DDA3937_RS21125 at 4809.880 kb on + strand, within DDA3937_RS21125 at 4809.880 kb on + strand, within DDA3937_RS21125 at 4809.881 kb on - strand, within DDA3937_RS21125 at 4809.881 kb on - strand, within DDA3937_RS21125 at 4809.949 kb on + strand, within DDA3937_RS21125 at 4809.949 kb on + strand, within DDA3937_RS21125 at 4809.950 kb on - strand, within DDA3937_RS21125 at 4809.950 kb on - strand, within DDA3937_RS21125 at 4809.953 kb on + strand, within DDA3937_RS21125 at 4809.953 kb on + strand, within DDA3937_RS21125 at 4809.990 kb on + strand, within DDA3937_RS21125 at 4810.011 kb on + strand, within DDA3937_RS21125 at 4810.262 kb on + strand at 4810.339 kb on + strand at 4810.339 kb on + strand at 4810.436 kb on - strand, within DDA3937_RS21130 at 4810.528 kb on + strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.529 kb on - strand, within DDA3937_RS21130 at 4810.712 kb on + strand, within DDA3937_RS21130 at 4810.712 kb on + strand, within DDA3937_RS21130 at 4810.712 kb on + strand, within DDA3937_RS21130 at 4810.713 kb on - strand, within DDA3937_RS21130 at 4810.713 kb on - strand, within DDA3937_RS21130 at 4810.713 kb on - strand, within DDA3937_RS21130 at 4810.776 kb on + strand, within DDA3937_RS21130 at 4810.776 kb on + strand, within DDA3937_RS21130 at 4810.776 kb on + strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.777 kb on - strand, within DDA3937_RS21130 at 4810.782 kb on + strand, within DDA3937_RS21130 at 4810.906 kb on + strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4810.907 kb on - strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.123 kb on + strand, within DDA3937_RS21130 at 4811.124 kb on - strand, within DDA3937_RS21130 at 4811.216 kb on + strand at 4811.216 kb on + strand at 4811.286 kb on + strand at 4811.286 kb on + strand at 4811.286 kb on + strand at 4811.287 kb on - strand at 4811.287 kb on - strand at 4811.287 kb on - strand at 4811.296 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.306 kb on + strand at 4811.307 kb on - strand at 4811.312 kb on - strand at 4811.312 kb on - strand at 4811.341 kb on + strand at 4811.341 kb on + strand at 4811.341 kb on + strand at 4811.342 kb on - strand at 4811.342 kb on - strand at 4811.438 kb on + strand at 4811.438 kb on + strand at 4811.439 kb on - strand at 4811.439 kb on - strand at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.479 kb on + strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.480 kb on - strand, within DDA3937_RS21135 at 4811.635 kb on + strand, within DDA3937_RS21135 at 4811.636 kb on - strand, within DDA3937_RS21135 at 4811.636 kb on - strand, within DDA3937_RS21135 at 4811.719 kb on + strand at 4811.719 kb on + strand at 4811.724 kb on + strand at 4811.730 kb on + strand at 4811.825 kb on - strand at 4811.825 kb on - strand at 4811.826 kb on + strand at 4811.827 kb on - strand at 4811.917 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.035 kb on + strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand, within DDA3937_RS21140 at 4812.036 kb on - strand at 4812.259 kb on - strand at 4812.259 kb on - strand at 4812.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,809,360 + DDA3937_RS21125 0.19 -0.3 4,809,371 + DDA3937_RS21125 0.20 +1.1 4,809,524 - DDA3937_RS21125 0.34 -2.0 4,809,543 + DDA3937_RS21125 0.35 -0.0 4,809,700 + DDA3937_RS21125 0.50 +2.3 4,809,700 + DDA3937_RS21125 0.50 -2.1 4,809,700 + DDA3937_RS21125 0.50 +1.3 4,809,700 + DDA3937_RS21125 0.50 +2.1 4,809,700 + DDA3937_RS21125 0.50 +1.9 4,809,700 + DDA3937_RS21125 0.50 -0.1 4,809,701 - DDA3937_RS21125 0.50 -2.4 4,809,701 - DDA3937_RS21125 0.50 -1.4 4,809,701 - DDA3937_RS21125 0.50 +2.2 4,809,701 - DDA3937_RS21125 0.50 -1.4 4,809,701 - DDA3937_RS21125 0.50 +0.6 4,809,701 - DDA3937_RS21125 0.50 -1.0 4,809,809 + DDA3937_RS21125 0.59 -0.1 4,809,829 + DDA3937_RS21125 0.61 -1.8 4,809,853 + DDA3937_RS21125 0.63 -2.9 4,809,853 + DDA3937_RS21125 0.63 -2.4 4,809,854 - DDA3937_RS21125 0.63 +0.5 4,809,854 - DDA3937_RS21125 0.63 -2.1 4,809,854 - DDA3937_RS21125 0.63 -2.1 4,809,880 + DDA3937_RS21125 0.66 -1.0 4,809,880 + DDA3937_RS21125 0.66 -0.3 4,809,880 + DDA3937_RS21125 0.66 +0.0 4,809,880 + DDA3937_RS21125 0.66 +0.8 4,809,880 + DDA3937_RS21125 0.66 -1.2 4,809,881 - DDA3937_RS21125 0.66 +0.5 4,809,881 - DDA3937_RS21125 0.66 -2.3 4,809,949 + DDA3937_RS21125 0.72 +0.0 4,809,949 + DDA3937_RS21125 0.72 -0.7 4,809,950 - DDA3937_RS21125 0.72 +0.7 4,809,950 - DDA3937_RS21125 0.72 -2.9 4,809,953 + DDA3937_RS21125 0.72 +0.9 4,809,953 + DDA3937_RS21125 0.72 +2.1 4,809,990 + DDA3937_RS21125 0.75 +0.4 4,810,011 + DDA3937_RS21125 0.77 -3.1 4,810,262 + +0.4 4,810,339 + +0.3 4,810,339 + +1.3 4,810,436 - DDA3937_RS21130 0.10 -0.8 4,810,528 + DDA3937_RS21130 0.20 -2.0 4,810,529 - DDA3937_RS21130 0.20 -3.0 4,810,529 - DDA3937_RS21130 0.20 -0.3 4,810,529 - DDA3937_RS21130 0.20 -1.8 4,810,529 - DDA3937_RS21130 0.20 -2.2 4,810,712 + DDA3937_RS21130 0.39 -1.0 4,810,712 + DDA3937_RS21130 0.39 -2.1 4,810,712 + DDA3937_RS21130 0.39 -0.3 4,810,713 - DDA3937_RS21130 0.39 -0.8 4,810,713 - DDA3937_RS21130 0.39 -1.9 4,810,713 - DDA3937_RS21130 0.39 +0.0 4,810,776 + DDA3937_RS21130 0.45 -0.5 4,810,776 + DDA3937_RS21130 0.45 -3.1 4,810,776 + DDA3937_RS21130 0.45 -2.6 4,810,777 - DDA3937_RS21130 0.45 +0.2 4,810,777 - DDA3937_RS21130 0.45 -0.7 4,810,777 - DDA3937_RS21130 0.45 -1.7 4,810,777 - DDA3937_RS21130 0.45 +1.6 4,810,782 + DDA3937_RS21130 0.46 -0.3 4,810,906 + DDA3937_RS21130 0.59 +0.2 4,810,907 - DDA3937_RS21130 0.59 +0.6 4,810,907 - DDA3937_RS21130 0.59 -0.9 4,810,907 - DDA3937_RS21130 0.59 -3.3 4,810,907 - DDA3937_RS21130 0.59 -2.3 4,811,123 + DDA3937_RS21130 0.81 -1.3 4,811,123 + DDA3937_RS21130 0.81 -0.0 4,811,123 + DDA3937_RS21130 0.81 -0.0 4,811,124 - DDA3937_RS21130 0.81 -1.2 4,811,216 + -2.7 4,811,216 + -0.5 4,811,286 + -2.7 4,811,286 + -3.5 4,811,286 + +0.6 4,811,287 - -0.5 4,811,287 - -1.8 4,811,287 - -2.6 4,811,296 + -1.7 4,811,306 + -1.7 4,811,306 + +3.3 4,811,306 + -1.4 4,811,306 + -1.2 4,811,307 - -2.0 4,811,312 - -1.7 4,811,312 - +1.1 4,811,341 + -1.4 4,811,341 + -0.4 4,811,341 + -1.3 4,811,342 - -2.0 4,811,342 - +0.2 4,811,438 + -1.8 4,811,438 + +0.0 4,811,439 - -1.8 4,811,439 - -2.2 4,811,479 + DDA3937_RS21135 0.11 -1.0 4,811,479 + DDA3937_RS21135 0.11 -1.1 4,811,479 + DDA3937_RS21135 0.11 -1.6 4,811,480 - DDA3937_RS21135 0.11 -0.4 4,811,480 - DDA3937_RS21135 0.11 -1.0 4,811,480 - DDA3937_RS21135 0.11 -1.8 4,811,480 - DDA3937_RS21135 0.11 -1.8 4,811,635 + DDA3937_RS21135 0.65 +1.3 4,811,636 - DDA3937_RS21135 0.65 -0.4 4,811,636 - DDA3937_RS21135 0.65 -2.8 4,811,719 + -0.2 4,811,719 + +0.1 4,811,724 + +1.5 4,811,730 + +1.2 4,811,825 - -0.7 4,811,825 - -3.0 4,811,826 + -0.1 4,811,827 - +1.6 4,811,917 + DDA3937_RS21140 0.13 -2.2 4,812,035 + DDA3937_RS21140 0.40 +0.3 4,812,035 + DDA3937_RS21140 0.40 +1.6 4,812,035 + DDA3937_RS21140 0.40 -0.3 4,812,035 + DDA3937_RS21140 0.40 -2.3 4,812,036 - DDA3937_RS21140 0.40 -1.0 4,812,036 - DDA3937_RS21140 0.40 +0.1 4,812,036 - DDA3937_RS21140 0.40 -2.2 4,812,036 - DDA3937_RS21140 0.40 -0.1 4,812,036 - DDA3937_RS21140 0.40 +0.6 4,812,036 - +1.6 4,812,259 - +2.5 4,812,259 - -2.7 4,812,297 - -1.0
Or see this region's nucleotide sequence